mRNA_E-fasciculatus_F_contig15808.3995.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15808.3995.1
Unique NamemRNA_E-fasciculatus_F_contig15808.3995.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15808.3995.1 vs. uniprot
Match: A0A6H5JS20_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS20_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 1.380e-141
Identity = 271/434 (62.44%), Postives = 275/434 (63.36%), Query Frame = 1 
Query:    1 GNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQPPSTGPQDGGPPLAGSFLRPNGSGDASAAGPASTGAAASGDGGQWSLRGMLPAWSREQPPNPKDS----------------------------------------------------------------------------------------------------TSRQAPGSSFGGSRGSS---GWMPDMSRGSGASTSSSPPGYLLGAVGAVPSPP--REELAGSGGTSNGKSGIGPADRPAGGGLFSAAEFGGKNTGFPGSSGGSSKAASPAWPSEQPNAPLGGAAGAEGRARAGESSGGRNPAVPAFSSSLDTGARFTSEGGRSGRPFVSTTTLGESDGHHGFEEEDGEEEENPFA 987
            GNGRSPPGVC GDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQ PSTGPQDGGP LAGSFLRP+GSG ASA             GGQW LRGMLPAWSREQP  P D                                                                                                     T RQAPGSSFG          WMPD SRGSG STSSSPPG +LGA GAVP+PP  REELAGSG TSNG S  GP DRPA GGLFSAA  GG+N GFPGSSGGSS AASPAWPSEQ NAPLGGAAGAEGR R GESSGGRN AVP FSSSLDTGARFTSE GRSG  FV TTTLGESD HHGFEEEDGEEEENPFA
Sbjct:  292 GNGRSPPGVCSGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTGPQDGGPSLAGSFLRPSGSGGASAXXXXXXXXXX--XGGQWRLRGMLPAWSREQPSKPGDGSALAPGGSAAPGREWNPHENPRTRIGNGVGRGGAVGPFGNGTGAAAAGRTNPANSSLFGGDATAGASGGGMGGAAKKESLFDSWRSPRAAXXXXXXXXXGTLRQAPGSSFGXXXXXXXXXAWMPDTSRGSGTSTSSSPPGNMLGAAGAVPTPPTSREELAGSGSTSNGNSVRGPTDRPARGGLFSAAGSGGENAGFPGSSGGSSMAASPAWPSEQSNAPLGGAAGAEGRVRGGESSGGRNLAVPTFSSSLDTGARFTSEVGRSGGTFVGTTTLGESDDHHGFEEEDGEEEENPFA 723
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BLAST of mRNA_E-fasciculatus_F_contig15808.3995.1 vs. uniprot
Match: D8LMZ7_ECTSI (PX domain containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ7_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 7.200e-74
Identity = 126/138 (91.30%), Postives = 127/138 (92.03%), Query Frame = 1 
Query:    1 GNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQPPSTGPQDGGPPLAGSFLRPNGSGDASAAGPASTGAAASGDGGQWSLRGMLPAWSREQPPNPKD 414
            GNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQ PST PQDGGPPLAGSFLRP+GSG ASAAGPA  GAA   DGGQWSLRGMLPAWSREQP  P D
Sbjct:  219 GNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPILRMDSTLAPLPEAFLRHRTPPGRQLPSTAPQDGGPPLAGSFLRPSGSGGASAAGPA--GAAGGVDGGQWSLRGMLPAWSREQPSKPGD 354
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15808.3995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS20_9PHAE1.380e-14162.44PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMZ7_ECTSI7.200e-7491.30PX domain containing protein (Partial) (Fragment) ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15808contigE-fasciculatus_F_contig15808:1252..2830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-16_001220.1
Exons3
Model size990
Cds size990
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15808.3995.1prot_E-fasciculatus_F_contig15808.3995.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15808 1252..2830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928050.9112976-CDS-E-fasciculatus_F_contig15808:1251..18261622928050.9112976-CDS-E-fasciculatus_F_contig15808:1251..1826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 1252..1826 -
1695995803.5819457-CDS-E-fasciculatus_F_contig15808:1251..18261695995803.5819457-CDS-E-fasciculatus_F_contig15808:1251..1826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 1252..1826 -
1622928050.9248903-CDS-E-fasciculatus_F_contig15808:2105..23731622928050.9248903-CDS-E-fasciculatus_F_contig15808:2105..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 2106..2373 -
1695995803.592409-CDS-E-fasciculatus_F_contig15808:2105..23731695995803.592409-CDS-E-fasciculatus_F_contig15808:2105..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 2106..2373 -
1622928050.9400237-CDS-E-fasciculatus_F_contig15808:2683..28301622928050.9400237-CDS-E-fasciculatus_F_contig15808:2683..2830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 2684..2830 -
1695995803.6073682-CDS-E-fasciculatus_F_contig15808:2683..28301695995803.6073682-CDS-E-fasciculatus_F_contig15808:2683..2830Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15808 2684..2830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15808.3995.1

>prot_E-fasciculatus_F_contig15808.3995.1 ID=prot_E-fasciculatus_F_contig15808.3995.1|Name=mRNA_E-fasciculatus_F_contig15808.3995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=330bp
GNGRSPPGVCPGDRLFKVNGDSTELMSLEAAWSSVARATRPVMLHFLGPI
LRMDSTLAPLPEAFLRHRTPPGRQPPSTGPQDGGPPLAGSFLRPNGSGDA
SAAGPASTGAAASGDGGQWSLRGMLPAWSREQPPNPKDSTSRQAPGSSFG
GSRGSSGWMPDMSRGSGASTSSSPPGYLLGAVGAVPSPPREELAGSGGTS
NGKSGIGPADRPAGGGLFSAAEFGGKNTGFPGSSGGSSKAASPAWPSEQP
NAPLGGAAGAEGRARAGESSGGRNPAVPAFSSSLDTGARFTSEGGRSGRP
FVSTTTLGESDGHHGFEEEDGEEEENPFA*
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mRNA from alignment at E-fasciculatus_F_contig15808:1252..2830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15808.3995.1 ID=mRNA_E-fasciculatus_F_contig15808.3995.1|Name=mRNA_E-fasciculatus_F_contig15808.3995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1579bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15808:1252..2830- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAACGGGAGATCACCACCTGGGGTATGCCCGGGAGACCGCCTGTTCAA
GGTTAATGGAGACTCGACGGAGCTCATGTCGCTGGAAGCCGCCTGGAGTT
CTGTGGCGCGGGCCACGCGGCCGGTGATGCTGCATTTCTTGGGCCCGGTA
AGATGGCTTGCTGCGTGGATGATGATTGGAAAACGGGGAACGGGCGGGGG
GGCGGTGGCCTTCGGGCGCACCGAAGCAAAGCGTGTTGTTGCCCCCGTTG
GCACGCCATCTTGCGATACATCTTGCGATACGTTGCGGATTTCATCACTC
GTTTGTGCCAACCTCATGCTCATGCTCATACTGTGCCCATAAACAAGCCC
CAATCACTAAATCTCCGTTTTGCACCTTTCCCGTCCGTCTCACCGCCTGT
GCCTCGTTTCAACCTGGCTGTATCCCCATGGCCACCTGCCTACCTGTTGG
CTCACAGATCCTCCGCATGGATTCGACCCTGGCCCCGCTACCAGAAGCGT
TTCTGCGTCACCGCACCCCCCCGGGGCGGCAACCCCCATCCACGGGGCCC
CAAGACGGCGGACCTCCGCTCGCCGGAAGCTTCCTGCGCCCAAACGGGAG
CGGCGACGCTTCCGCCGCGGGCCCCGCCTCCACCGGCGCCGCTGCTAGTG
GTGATGGTGGCCAGTGGAGCCTGAGAGGCATGCTGCCGGCATGGAGCCGG
GAACAACCTCCAAACCCCAAGGACAGTAGTGCACTGCCCCCTGGCTCCGC
CACCCCTGGGCGAGGGTGGAATCCCCACGAGAACCCGAGGGCGGCAATGG
GGAACGGAGTGGGGCGGGGTGGCGCGGTGGGACCTTTCGGGAACGGTACG
GGAGCGGCAGCAGCCGGCCGGACCACCCCGGCGAACTCCAGCCTCTTCGG
GGGGGACGCGACGGCCGGCGGAGGTGGGGCGAAGCAAGAGAGTTTGTTCG
ACAGCTGGCGATCACCGGGGGCGGCGGCGGCCGGGGGGGGGGCGGGGATG
GGAGGCACGTCGCGTCAAGCCCCGGGGAGTTCGTTCGGAGGCTCTCGGGG
AAGCTCGGGTTGGATGCCGGACATGTCGCGCGGCTCGGGAGCGTCGACCA
GTTCCTCCCCGCCGGGTTACCTGTTGGGGGCAGTAGGAGCGGTACCGTCA
CCCCCTCGAGAAGAACTAGCGGGTAGCGGCGGCACCTCCAATGGGAAGTC
GGGAATAGGGCCTGCGGATCGCCCGGCAGGAGGAGGACTGTTTTCGGCAG
CAGAATTTGGCGGCAAGAACACGGGTTTTCCAGGGAGTAGTGGTGGGTCA
TCCAAGGCGGCGTCGCCAGCATGGCCGTCCGAGCAACCGAACGCACCGCT
GGGGGGTGCGGCCGGGGCAGAGGGAAGAGCAAGAGCCGGCGAGAGCAGCG
GTGGGAGAAATCCCGCTGTCCCAGCGTTTTCTTCTAGTCTTGATACGGGA
GCGAGGTTCACGTCGGAGGGAGGACGATCTGGTAGACCGTTTGTTAGCAC
GACCACCCTTGGGGAGAGTGATGGCCACCACGGGTTTGAGGAGGAGGACG
GCGAAGAGGAGGAGAACCCTTTCGCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15808:1252..2830-

>mRNA_E-fasciculatus_F_contig15808.3995.1 ID=mRNA_E-fasciculatus_F_contig15808.3995.1|Name=mRNA_E-fasciculatus_F_contig15808.3995.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15808:1252..2830- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAACGGGAGATCACCACCTGGGGTATGCCCGGGAGACCGCCTGTTCAA
GGTTAATGGAGACTCGACGGAGCTCATGTCGCTGGAAGCCGCCTGGAGTT
CTGTGGCGCGGGCCACGCGGCCGGTGATGCTGCATTTCTTGGGCCCGGGC
AACGGGAGATCACCACCTGGGGTATGCCCGGGAGACCGCCTGTTCAAGGT
TAATGGAGACTCGACGGAGCTCATGTCGCTGGAAGCCGCCTGGAGTTCTG
TGGCGCGGGCCACGCGGCCGGTGATGCTGCATTTCTTGGGCCCGATCCTC
CGCATGGATTCGACCCTGGCCCCGCTACCAGAAGCGTTTCTGCGTCACCG
CACCCCCCCGGGGCGGCAACCCCCATCCACGGGGCCCCAAGACGGCGGAC
CTCCGCTCGCCGGAAGCTTCCTGCGCCCAAACGGGAGCGGCGACGCTTCC
GCCGCGGGCCCCGCCTCCACCGGCGCCGCTGCTAGTGGTGATGGTGGCCA
GTGGAGCCTGAGAGGCATGCTGCCGGCATGGAGCCGGGAACAACCTCCAA
ACCCCAAGGACAATCCTCCGCATGGATTCGACCCTGGCCCCGCTACCAGA
AGCGTTTCTGCGTCACCGCACCCCCCCGGGGCGGCAACCCCCATCCACGG
GGCCCCAAGACGGCGGACCTCCGCTCGCCGGAAGCTTCCTGCGCCCAAAC
GGGAGCGGCGACGCTTCCGCCGCGGGCCCCGCCTCCACCGGCGCCGCTGC
TAGTGGTGATGGTGGCCAGTGGAGCCTGAGAGGCATGCTGCCGGCATGGA
GCCGGGAACAACCTCCAAACCCCAAGGACAGCACGTCGCGTCAAGCCCCG
GGGAGTTCGTTCGGAGGCTCTCGGGGAAGCTCGGGTTGGATGCCGGACAT
GTCGCGCGGCTCGGGAGCGTCGACCAGTTCCTCCCCGCCGGGTTACCTGT
TGGGGGCAGTAGGAGCGGTACCGTCACCCCCTCGAGAAGAACTAGCGGGT
AGCGGCGGCACCTCCAATGGGAAGTCGGGAATAGGGCCTGCGGATCGCCC
GGCAGGAGGAGGACTGTTTTCGGCAGCAGAATTTGGCGGCAAGAACACGG
GTTTTCCAGGGAGTAGTGGTGGGTCATCCAAGGCGGCGTCGCCAGCATGG
CCGTCCGAGCAACCGAACGCACCGCTGGGGGGTGCGGCCGGGGCAGAGGG
AAGAGCAAGAGCCGGCGAGAGCAGCGGTGGGAGAAATCCCGCTGTCCCAG
CGTTTTCTTCTAGTCTTGATACGGGAGCGAGGTTCACGTCGGAGGGAGGA
CGATCTGGTAGACCGTTTGTTAGCACGACCACCCTTGGGGAGAGTGATGG
CCACCACGGGTTTGAGGAGGAGGACGGCGAAGAGGAGGAGAACCCTTTCG
CGTAGGCACGTCGCGTCAAGCCCCGGGGAGTTCGTTCGGAGGCTCTCGGG
GAAGCTCGGGTTGGATGCCGGACATGTCGCGCGGCTCGGGAGCGTCGACC
AGTTCCTCCCCGCCGGGTTACCTGTTGGGGGCAGTAGGAGCGGTACCGTC
ACCCCCTCGAGAAGAACTAGCGGGTAGCGGCGGCACCTCCAATGGGAAGT
CGGGAATAGGGCCTGCGGATCGCCCGGCAGGAGGAGGACTGTTTTCGGCA
GCAGAATTTGGCGGCAAGAACACGGGTTTTCCAGGGAGTAGTGGTGGGTC
ATCCAAGGCGGCGTCGCCAGCATGGCCGTCCGAGCAACCGAACGCACCGC
TGGGGGGTGCGGCCGGGGCAGAGGGAAGAGCAAGAGCCGGCGAGAGCAGC
GGTGGGAGAAATCCCGCTGTCCCAGCGTTTTCTTCTAGTCTTGATACGGG
AGCGAGGTTCACGTCGGAGGGAGGACGATCTGGTAGACCGTTTGTTAGCA
CGACCACCCTTGGGGAGAGTGATGGCCACCACGGGTTTGAGGAGGAGGAC
GGCGAAGAGGAGGAGAACCCTTTCGCGTAG
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