mRNA_E-fasciculatus_F_contig1580.3992.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.660e-22 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3
Query: 303 STDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHLET 515
STDRAAL+AL+ +TGG +W N WNTDA L WYGV+VND GRVV LSL NNLKGHIP+QLG+L L T
Sbjct: 10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMT 80
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 4.440e-20 Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHL 509
M S DR AL+AL+CSTGG W WNTDA+ +TW+GV+VNDQGRVV + L +NNL+G IPK+LG L+ L
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKL 71
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.820e-19 Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNL 500
M STDR ALIAL+ STGG W W+TDA L TW+GV+VNDQGRVV LSL NNL+GHIP+QLG+L
Sbjct: 1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.930e-18 Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 3
Query: 291 LAMDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHL 509
+AM STDR ALIAL+ STGG W W+TDA L+TW GV VNDQGRVV LSL NNL+G IP +LGNLS L
Sbjct: 17 VAMSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSAL 89
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.830e-18 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHLE 512
M TDR AL+ALY +TGG +W + W+TDA+L TW+GV VNDQGRVV L L NNL+G IP LG L++L+
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQ 72
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 3.790e-17 Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHL 509
M + DRAALIAL+ ST G +W N W+TDAEL+TW GV+VND+GRVV L L NNL G IP+ LG L+ L
Sbjct: 1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNEL 71
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 3.020e-16 Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHLE 512
M STDR L+ALY +T G +W +++ W TDA+LS W+GV VN QGRVV L LS NNL+GHIP +LGNL+ L+
Sbjct: 1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRGHIPPELGNLAALQ 72
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 3.500e-16 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 3
Query: 306 TDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHLET 515
TDR AL+AL+ STGG SW W+T AE++TW GVQVND+GRVV L L +NNL+G IP QLGNLS LE+
Sbjct: 4 TDRDALVALFRSTGGASWDKKDNWDTAAEIATWSGVQVNDEGRVVKLRLKSNNLRGPIPPQLGNLSFLES 73
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.160e-15 Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 3
Query: 246 AYHR---RIQTSTSSEASLAMDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHLE 512
AY+R ++Q S M DR AL+ALY +TGG W + WNT A LS WYGV+V+ QGRVV+LSL+ NNL+G IP +LG L+ L+
Sbjct: 76 AYYRACAKLQRKGGSAPYYTMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQ 167
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.250e-15 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 3
Query: 297 MDSTDRAALIALYCSTGGPSWAHNVGWNTDAELSTWYGVQVNDQGRVVSLSLSANNLKGHIPKQLGNLSHL 509
M STDR AL++L+ STGG W W+TDA+L+TW GV VN QGRVV+L L NNL+G IP +LG L+ L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAAL 71 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1580.3992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1580.3992.1 >prot_E-fasciculatus_F_contig1580.3992.1 ID=prot_E-fasciculatus_F_contig1580.3992.1|Name=mRNA_E-fasciculatus_F_contig1580.3992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=436bp MTFLPCFWYPAGYIPPGLGALRQLQLNDLSASKDFESDWDAAEKEIEEAAback to top mRNA from alignment at E-fasciculatus_F_contig1580:1685..15653- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1580.3992.1 ID=mRNA_E-fasciculatus_F_contig1580.3992.1|Name=mRNA_E-fasciculatus_F_contig1580.3992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=13969bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1580:1685..15653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1580:1685..15653- >mRNA_E-fasciculatus_F_contig1580.3992.1 ID=mRNA_E-fasciculatus_F_contig1580.3992.1|Name=mRNA_E-fasciculatus_F_contig1580.3992.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2616bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1580:1685..15653- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |