mRNA_E-fasciculatus_F_contig10499.399.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10499.399.1
Unique NamemRNA_E-fasciculatus_F_contig10499.399.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: D8LFY4_ECTSI (Elongation factor G, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFY4_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 4.430e-49
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE 273
            ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEK+VVAKYGMNR+ DEE+
Sbjct:  688 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKEVVAKYGMNRADDEED 778
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A836CHR4_9STRA (Elongation factor G, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHR4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.310e-34
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEE 270
            +TPEEYMGD+IGDINSRRG +VE+ DRNGLKQVE+ VPLANMFQYVS LRS +KGRA Y+M L KYDF+P NVEK++ +KY    ++D+E
Sbjct:  687 VTPEEYMGDIIGDINSRRGQVVEMIDRNGLKQVEAAVPLANMFQYVSHLRSVSKGRAQYTMVLKKYDFLPANVEKEITSKYAGKVASDDE 776
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: W7THY0_9STRA (Elongation factor G, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THY0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.410e-32
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE 273
            +TPEEYMGDVIGDINSRRG I EL +R   K VE+ VPLANMFQYVS LRS +KGRA+YSM+L  YD VPPNV+++VV K+G     DEEE
Sbjct:  693 VTPEEYMGDVIGDINSRRGQIAELGERGNAKTVEAMVPLANMFQYVSALRSMSKGRASYSMELAAYDLVPPNVQEEVVKKFGKKTPEDEEE 783
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S0IR20_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IR20_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 1.850e-32
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    4 TPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEE 270
            TPEE MGDVIGDINSRRG I EL++R  +K V + VPLANMFQYVS LRS TKGRA+YSM+L  Y+ VPPNVEK+++AKY  N   D+E
Sbjct:   93 TPEESMGDVIGDINSRRGLIAELAERGNMKVVRAKVPLANMFQYVSQLRSITKGRASYSMELDTYEVVPPNVEKELLAKYKGNTGDDDE 181
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S3AYB0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYB0_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 1.110e-31
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEE 270
            ITPEE+MGDVIGDINSRRG + EL +R  +K V + VPLANMFQYVS+LRSATKGRA+YSM L  Y+ VPPNV K++++KY  N   DE+
Sbjct:  192 ITPEEHMGDVIGDINSRRGMVGELGERGNMKVVRAQVPLANMFQYVSSLRSATKGRASYSMNLDSYELVPPNVAKELLSKYKGNTGDDED 281
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S1E433_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E433_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.090e-31
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 TPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSAD 264
            TPEEYMGD++GDIN RRG + +L +R  +K + + VPLANMFQYVSTLRS +KGRANYSM+L  YDFVPPNVE+++   + +    D
Sbjct:   21 TPEEYMGDILGDINGRRGMVGDLGERGNIKTISAQVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNVEEELKKGFVLETEED 107
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S2TQB0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQB0_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 2.490e-31
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    4 TPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKY 243
            TPEE+MGD+IGD+NSRRG + E++DR  +K V + VPL+ MFQYVSTLRS +KGRA Y MQL  YDFVPPN+EK+++ +Y
Sbjct:   29 TPEEHMGDIIGDLNSRRGQVQEMTDRGNVKLVSALVPLSEMFQYVSTLRSISKGRAQYQMQLHSYDFVPPNLEKEIIEQY 108
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S3WR87_9SPIT (Hypothetical protein n=3 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3WR87_9SPIT)

HSP 1 Score: 123 bits (309), Expect = 4.400e-31
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 ITPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE 273
            ITPEE MG+VIGDINSRRG + ELSDR  +K V + VPLANMFQYVS+LRS TKGRA+Y+M+L  Y+ VPPNVEK+++AKY  N   D++E
Sbjct:  459 ITPEESMGEVIGDINSRRGMVAELSDRGNMKVVRAKVPLANMFQYVSSLRSLTKGRASYTMELDSYEIVPPNVEKELLAKYKGNTGDDDDE 549
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BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A7S2FQT5_9STRA (Elongation factor G, mitochondrial n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQT5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.920e-31
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    4 TPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE 273
            TPEEYMGDVIGDI +RRG +VEL +R   K +E+ VPL NMFQYVS LRS +KGRANYSM+L KY+ VPPNVEKD+VA++   + ADE+E
Sbjct:  565 TPEEYMGDVIGDITARRGMVVELGERGNTKTIEALVPLGNMFQYVSQLRSMSKGRANYSMKLAKYELVPPNVEKDIVAEF---KKADEDE 651
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Match: A0A0M0J505_9EUKA (Elongation factor G, mitochondrial n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J505_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 2.810e-30
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    4 TPEEYMGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGRANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE 273
            TPEEY+GDVIGDINSRRG + EL +R  +K V + VPLANMFQYVS+LRS+TKGRA+Y M L  Y+ VPPNVEK+++AKY  N + DE+E
Sbjct:  685 TPEEYIGDVIGDINSRRGMVAELGERGNMKTVRAMVPLANMFQYVSSLRSSTKGRASYQMSLDSYEIVPPNVEKEIIAKYKGN-TGDEDE 773
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10499.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFY4_ECTSI4.430e-4995.60Elongation factor G, mitochondrial n=2 Tax=Ectocar... [more]
A0A836CHR4_9STRA3.310e-3468.89Elongation factor G, mitochondrial n=1 Tax=Tribone... [more]
W7THY0_9STRA1.410e-3268.13Elongation factor G, mitochondrial n=2 Tax=Monodop... [more]
A0A7S0IR20_9EUKA1.850e-3267.42Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3AYB0_9EUKA1.110e-3165.56Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1E433_9STRA2.090e-3159.77Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2TQB0_9EUKA2.490e-3163.75Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3WR87_9SPIT4.400e-3165.93Hypothetical protein n=3 Tax=Choreotrichia TaxID=1... [more]
A0A7S2FQT5_9STRA6.920e-3166.67Elongation factor G, mitochondrial n=1 Tax=Florenc... [more]
A0A0M0J505_9EUKA2.810e-3065.56Elongation factor G, mitochondrial n=1 Tax=Chrysoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10499contigE-fasciculatus_F_contig10499:3568..4847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.5e-38
Seed eggNOG ortholog2880.D8LFY4
KEGG koko:K02355
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007275,GO:0008144,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009791,GO:0009845,GO:0009941,GO:0009987,GO:0016043,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0048856,GO:0071840,GO:0090351,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPEFG, plastid translation elongation factor EF-G
Ec32 orthologEc-05_005020.1
Exons3
Model size276
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10499.399.1prot_E-fasciculatus_F_contig10499.399.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10499 3568..4829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.4883604-CDS-E-fasciculatus_F_contig10499:3567..36301622927547.4883604-CDS-E-fasciculatus_F_contig10499:3567..3630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 3568..3630 -
1695995589.0776293-CDS-E-fasciculatus_F_contig10499:3567..36301695995589.0776293-CDS-E-fasciculatus_F_contig10499:3567..3630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 3568..3630 -
1622927547.5003133-CDS-E-fasciculatus_F_contig10499:4195..42761622927547.5003133-CDS-E-fasciculatus_F_contig10499:4195..4276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 4196..4276 -
1695995589.0876255-CDS-E-fasciculatus_F_contig10499:4195..42761695995589.0876255-CDS-E-fasciculatus_F_contig10499:4195..4276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 4196..4276 -
1622927547.5113258-CDS-E-fasciculatus_F_contig10499:4715..48291622927547.5113258-CDS-E-fasciculatus_F_contig10499:4715..4829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 4716..4829 -
1695995589.098478-CDS-E-fasciculatus_F_contig10499:4715..48291695995589.098478-CDS-E-fasciculatus_F_contig10499:4715..4829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10499 4716..4829 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927547.526005-UTR-E-fasciculatus_F_contig10499:4829..48471622927547.526005-UTR-E-fasciculatus_F_contig10499:4829..4847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10499 4830..4847 -
1695995589.1076832-UTR-E-fasciculatus_F_contig10499:4829..48471695995589.1076832-UTR-E-fasciculatus_F_contig10499:4829..4847Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10499 4830..4847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10499.399.1

>prot_E-fasciculatus_F_contig10499.399.1 ID=prot_E-fasciculatus_F_contig10499.399.1|Name=mRNA_E-fasciculatus_F_contig10499.399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MGDVIGDINSRRGSIVELSDRNGLKQVESTVPLANMFQYVSTLRSATKGR
ANYSMQLLKYDFVPPNVEKDVVAKYGMNRSADEEE*
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mRNA from alignment at E-fasciculatus_F_contig10499:3568..4847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10499.399.1 ID=mRNA_E-fasciculatus_F_contig10499.399.1|Name=mRNA_E-fasciculatus_F_contig10499.399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1280bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10499:3568..4847- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCACCCCCGAGGAGTACATGGGTGACGTCATCGGCGACATCAACTCCCG
CCGCGGCAGCATCGTTGAGCTCTCGGACAGGAATGGGTTGAAGCAAGTGG
AATCCACCGTGCCCCTCGCGAACATGTTCCAGGTGCGAAGCGAAGCAGAA
AAAGTCAGACGTTGTATGCATTGAATTGCGACTCTTTCTTTGTTTCGACT
CGACCCGGACCCTGACACGCTACTGCTGTCGTTTTAAGCCGAGGGTTAGG
TACTGCTGACATCAAACGCGTTTCCTCTTGTTTTTTTTCCCCTCTCTCTT
CAAGGGCTTTCTATCTCTACATGACAACGCTTTGCCTTTTCGTTTTTTCC
TCTCTCTTCCATGGGCTTTCATCCCTCTTTCTGTTTCCACTTGCCTCGGT
TGCTGGATGTTTTGTGAGGCCGAACGGCGACGACGTTCTCTGCTGCTGGC
GCCCTCATCCTTCTTGTTTCTTCTGACCTATCCCCCCCAACCCCTGCTTC
GTCGTCGTGCACTGTCAAACATTCGCGCGGAACAAAAAATAAACGTCCTT
TTTGAAAAAAAAACAATACAGTACGTTTCGACCCTCCGGTCGGCGACGAA
GGGGCGTGCCAACTACTCGATGCAATTGCTCAAGTACGACTTCGTGCCAC
CGGTGAGTCCTCCCTGACGATGGGTTGCAGTTGGAGTCTTCGAAGGATTA
TGTGAACATGTGTGATAAAGCGTACAATCGGGGAAGTCGGGTTAAAGGTT
GGAGGACTAGAGTCTGCGTCCCCCGTCCCTGTTGTGTTTTCTCATAACCC
TGTCAATCTCGCCAAGAAGGCGGTCCGTCTGGCCGCGTATAGTCGAACCA
GTAACCTTCCGCAAGGTTTTTGTATTGTATTCAGGGAATGTTTTTGGAAG
TAGGGGTTAGGGTTCGGGATAGGGTCTGCGTCCCCCGTCCCTGTTCTGTT
TTCTCACAACCTTGCAATATCACTCTCGCGAAGGAGGCGGTCCTTGGGTT
GTAGGCACTGCTGTCGAAGGGGGAAAAGGGAGTTGGACAAGCGAGGATAG
TCACAAATTGTACCTTTAAAGTAGGAAGTAGTAAGCATCGTTTGGTGTCC
CTGTTTGTTTCCCTATCCGCCACCAGACAGCAAGCAACACGAAGTAACAG
CAATCGTCGTATTTTTGCTGCCGCCCCCTCTGTTTTTCTCCCCTGTGGTG
TGTGTGTGTGCCAACAGAACGTGGAGAAGGATGTCGTGGCGAAGTACGGC
ATGAACAGGAGTGCTGACGAGGAGGAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10499:3568..4847-

>mRNA_E-fasciculatus_F_contig10499.399.1 ID=mRNA_E-fasciculatus_F_contig10499.399.1|Name=mRNA_E-fasciculatus_F_contig10499.399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10499:3568..4847- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTGACGTCATCGGCGACATCAACTCCCGCCGCGGCAGCATCGTTGA
GCTCTCGGACAGGAATGGGTTGAAGCAAGTGGAATCCACCGTGCCCCTCG
CGAACATGTTCCAGATGGGTGACGTCATCGGCGACATCAACTCCCGCCGC
GGCAGCATCGTTGAGCTCTCGGACAGGAATGGGTTGAAGCAAGTGGAATC
CACCGTGCCCCTCGCGAACATGTTCCAGTACGTTTCGACCCTCCGGTCGG
CGACGAAGGGGCGTGCCAACTACTCGATGCAATTGCTCAAGTACGACTTC
GTGCCACCGTACGTTTCGACCCTCCGGTCGGCGACGAAGGGGCGTGCCAA
CTACTCGATGCAATTGCTCAAGTACGACTTCGTGCCACCGAACGTGGAGA
AGGATGTCGTGGCGAAGTACGGCATGAACAGGAGTGCTGACGAGGAGGAG
TAAAACGTGGAGAAGGATGTCGTGGCGAAGTACGGCATGAACAGGAGTGC
TGACGAGGAGGAGTAA
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