mRNA_E-fasciculatus_F_contig15798.3987.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15798.3987.1
Unique NamemRNA_E-fasciculatus_F_contig15798.3987.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Match: D7FHN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN9_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.760e-48
Identity = 109/155 (70.32%), Postives = 116/155 (74.84%), Query Frame = 1 
Query:    1 AAAAAARPVVVVARLEMPGRVGAVCFPPTPTPTGTCAFAASLADPAKTGGTVSRGSDVLAISPVDWALPAWSSAPSASSPSGARKGADKAGAAISTVGEQPSCPMRASLRERLESGPVPSAFRFAGRGRYCPPHLCRSPTFSGTAAGTATEEAAA 465
            AA AAARP V VAR+ + G  GAV  P TP+ TG C   A   D +K G   SRG  V AISP DWALPAWSSA S+SS SG+R+GADK GAA STVGEQ SCPM ASLRERLESGPVPSAFRFAGRGR CPPHL  SPTFSGT AGTATE  AA
Sbjct:  202 AATAAARPAV-VARVAVTGDAGAVYSPCTPSSTGACTVDAPSTDTSKVGDRFSRGGGVPAISPADWALPAWSSALSSSSSSGSREGADKNGAAASTVGEQSSCPMLASLRERLESGPVPSAFRFAGRGRGCPPHLSTSPTFSGTVAGTATEHGAA 355
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BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Match: A0A6H5JBG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG2_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.790e-47
Identity = 106/153 (69.28%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:    7 AAAARPVVVVARLEMPGRVGAVCFPPTPTPTGTCAFAASLADPAKTGGTVSRGSDVLAISPVDWALPAWSSAPSASSPSGARKGADKAGAAISTVGEQPSCPMRASLRERLESGPVPSAFRFAGRGRYCPPHLCRSPTFSGTAAGTATEEAAA 465
            AAAARP V VAR  + G  GA   P TP+ TG C   A   D ++ G   SRG  V AISP DWALPAW SA S+SS SGAR+GADK GAA STVGEQPSCPM ASL ERLESGPVPSAF FAGRGR CPPHL  SPTFSGTAAGTATE+ AA
Sbjct:  251 AAAARPAV-VARAAVTGDTGAAFSPCTPSSTGECTVDAYSVDTSEAGDRFSRGGSVPAISPADWALPAWGSALSSSSSSGAREGADKTGAAASTVGEQPSCPMLASLSERLESGPVPSAFGFAGRGRGCPPHLSASPTFSGTAAGTATEDGAA 402
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BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Match: D8LKI0_ECTSI (Possible cAMP or rho kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI0_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 4.000e-43
Identity = 95/133 (71.43%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:   55 GRVGAVCFPPTPTPTGTCAFAASLADPAKTGGTVSRGSDVLAISPVDWALPAWSSAPSASSPSGARKGADKAGAAISTVGEQPSCPMRASLRERLESGPVPSAFRFAGRGRYCPPHLCRSPTFSGTAAGTATE 453
            G  GAV  P TP  TG C   AS  D +K G   SRG  V AISP DWALPAWSSA S+SS SG+R+GADK GAA STVGEQ SCPM ASLRERLESGPVPSAFRF GRGR CPPHL  SP FSGT AGTATE
Sbjct:  290 GDTGAVYSPCTPYSTGACTVDASSTDTSKVGDRFSRGGGVPAISPADWALPAWSSALSSSSSSGSREGADKNGAAASTVGEQSSCPMLASLRERLESGPVPSAFRFVGRGRGCPPHLSASPMFSGTGAGTATE 422
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BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Match: A0A6H5JPS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.880e-41
Identity = 93/140 (66.43%), Postives = 99/140 (70.71%), Query Frame = 1 
Query:   28 VVVARLEMPGRVGAVCFPPTPTPTGTCAFAASLADPAKTGGTVSRGSDVLAISPVDWALPAWSSAPSASSPSGARKGADKAGAAISTVGEQPSCPMRASLRERLESGPVPSAFRFAGRGRYCPPHLCRSPTFSGTAAGTA 447
            VVVAR+ + G  GA   P TP+ TG C   AS  D +K GG  SRG  V AISP DW LPAWSSA S SS SG R+GADK GAA  T+GEQPSCPM ASLRERLESGPVPSAF FAG GR CPPHL   PT S TA GTA
Sbjct:  217 VVVARVAVTGNAGAGFSPYTPSSTGACTIDASSTDTSKVGGRFSRGGSVPAISPADWTLPAWSSALSWSSSSGTREGADKTGAASWTIGEQPSCPMLASLRERLESGPVPSAFGFAGHGRGCPPHLSAWPTISRTATGTA 356
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Match: D8LKH6_ECTSI (Possible rho or cAMP PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH6_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.170e-36
Identity = 90/167 (53.89%), Postives = 101/167 (60.48%), Query Frame = 3 
Query:  546 GDKQDKYTLENMDPLDDPDGKEWVAAAXXXXXXXXXXKKTDAIYGNQSVDQSIVDRLMGIGGHPASQVMRVSGLNTASXXXXXXXXXXXXXXXXXXXXDSEKTQRHRCEKLDTDQDYIGKIDAMTEEVSSVLQKTLAAAASVXXXXXXXXXXXXXXSSPADSFREST 1046
            GDK+D Y LENMD LDD D K   AA+           KT AIYGNQS+DQSI + LMGIGG PA QVMRVSGL+ A                     +S+K QRHRCE+LD D+DY+GKID MTEEVSSV+QK LAAAASV              SSPADSF  ST
Sbjct:   85 GDKRDFYVLENMDLLDDADEKTGTAASASRKDNDDGKMKTGAIYGNQSIDQSIAEALMGIGGRPALQVMRVSGLDAALTPSSGPSDSTEEEQEEASPAESKKRQRHRCEELDIDEDYLGKIDVMTEEVSSVVQKILAAAASVAPPTPPLTPASAM-SSPADSFHGST 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15798.3987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHN9_ECTSI1.760e-4870.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBG2_9PHAE2.790e-4769.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKI0_ECTSI4.000e-4371.43Possible cAMP or rho kinase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JPS2_9PHAE1.880e-4166.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKH6_ECTSI2.170e-3653.89Possible rho or cAMP PK n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15798contigE-fasciculatus_F_contig15798:966..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPossible cAMP or rho kinase
Ec32 orthologEc-16_003030.1
Exons3
Model size1046
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15798.3987.1prot_E-fasciculatus_F_contig15798.3987.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15798 1014..2182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928049.5888088-UTR-E-fasciculatus_F_contig15798:965..10131622928049.5888088-UTR-E-fasciculatus_F_contig15798:965..1013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 966..1013 +
1695995802.8793495-UTR-E-fasciculatus_F_contig15798:965..10131695995802.8793495-UTR-E-fasciculatus_F_contig15798:965..1013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 966..1013 +
1622928049.64084-UTR-E-fasciculatus_F_contig15798:2182..24031622928049.64084-UTR-E-fasciculatus_F_contig15798:2182..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 2183..2403 +
1695995802.9096167-UTR-E-fasciculatus_F_contig15798:2182..24031695995802.9096167-UTR-E-fasciculatus_F_contig15798:2182..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 2183..2403 +
1622928049.6563253-UTR-E-fasciculatus_F_contig15798:2809..29291622928049.6563253-UTR-E-fasciculatus_F_contig15798:2809..2929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 2810..2929 +
1695995802.921679-UTR-E-fasciculatus_F_contig15798:2809..29291695995802.921679-UTR-E-fasciculatus_F_contig15798:2809..2929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15798 2810..2929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928049.600591-CDS-E-fasciculatus_F_contig15798:1013..15401622928049.600591-CDS-E-fasciculatus_F_contig15798:1013..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15798 1014..1540 +
1695995802.8892741-CDS-E-fasciculatus_F_contig15798:1013..15401695995802.8892741-CDS-E-fasciculatus_F_contig15798:1013..1540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15798 1014..1540 +
1622928049.6201224-CDS-E-fasciculatus_F_contig15798:2052..21821622928049.6201224-CDS-E-fasciculatus_F_contig15798:2052..2182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15798 2053..2182 +
1695995802.8995235-CDS-E-fasciculatus_F_contig15798:2052..21821695995802.8995235-CDS-E-fasciculatus_F_contig15798:2052..2182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15798 2053..2182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15798.3987.1

>prot_E-fasciculatus_F_contig15798.3987.1 ID=prot_E-fasciculatus_F_contig15798.3987.1|Name=mRNA_E-fasciculatus_F_contig15798.3987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
MPGRVGAVCFPPTPTPTGTCAFAASLADPAKTGGTVSRGSDVLAISPVDW
ALPAWSSAPSASSPSGARKGADKAGAAISTVGEQPSCPMRASLRERLESG
PVPSAFRFAGRGRYCPPHLCRSPTFSGTAAGTATEEAAAGRRVQVLPPAP
PTVHVRRTSGTHRTPVATSRTNIRWRTWTPSTTRTGRSGSPRQPAARMTT
TARRRPTPSTAISPWTSP*
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mRNA from alignment at E-fasciculatus_F_contig15798:966..2929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15798.3987.1 ID=mRNA_E-fasciculatus_F_contig15798.3987.1|Name=mRNA_E-fasciculatus_F_contig15798.3987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1964bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15798:966..2929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGCGGCGGCGGCGCGGCCGGTGGTGGTGGTTGCGCGGTTGGAGAT
GCCCGGGCGCGTGGGAGCTGTGTGCTTCCCCCCCACGCCTACCCCGACCG
GGACATGCGCTTTCGCCGCCTCTCTCGCCGATCCCGCCAAGACCGGCGGC
ACAGTTTCCCGCGGTAGTGACGTGCTCGCCATCTCCCCCGTCGACTGGGC
GCTGCCGGCCTGGAGCTCGGCACCTTCGGCGTCTTCTCCTTCTGGTGCCC
GCAAGGGGGCGGACAAGGCCGGCGCCGCCATCTCGACCGTCGGGGAGCAG
CCCTCGTGTCCGATGCGCGCCAGCCTCAGAGAGAGACTGGAGAGCGGGCC
GGTGCCTTCGGCGTTTCGTTTCGCTGGCCGTGGTCGCTATTGCCCGCCCC
ACCTCTGCCGTTCGCCGACGTTTTCGGGAACCGCTGCGGGAACGGCGACG
GAAGAGGCGGCGGCGGGGCGGCGGGTGCAAGTGCTGCCCCCGGCACCGCC
TACGGTGCATGTGCGTCGTACTTCGGGTACGCATCGCACGCCGGTGGCGA
CAAGCAGGACAAATATACGCTGGAGGTATGTCGTGCGTCGCAATTTTTTT
GTCTTCTTTTTTTTTTGCCACAGCCAGCCAGAACACCGCTACCCCGTGCA
TGATTTTGTTTTTCTTGCAACTATATTTTTTTACCACCGCCCAACATCGA
CACCGGTACATTTTGTTTTTGGGTGTTTTTTTTCGCCACCGTCCGGAATG
TACACCACCCTTCCAGTGCATGAACATATTTTTGATGTTTTTCCTTCTTT
TTTATATGCCACCGCCCAGAACTGGTTGTGTTTTTTTGATACTTTTGTTT
TTGTCAACGCCCGAAATCGACATCGCTCTTCCGGTGCATGAACAACTGTT
TTTTGTTTAGCTGGGTTTGTTTGCCCTAGCTCTTCGATTGGCAAGCGTTT
ATTTGATGTGAAGGAAACGATGTGCCGGTCGACACTTCCAACTTGTGCCA
AACAATTGAGGATTCATGCTCGTAAGCGCCCGACGACCCCCTCACCCTCC
ATGCACGACCATCGGCGCCTTTGCAACACAATCGCAGAACATGGACCCCC
TCGACGACCCGGACGGGAAGGAGTGGGTCGCCGCGGCAGCCAGCCGCAAG
GATGACGACGACGGCAAGAAGAAGACCGACGCCATCTACGGCAATCAGTC
CGTGGACCAGTCCATAGTCGACAGGCTGATGGGAATCGGCGGCCACCCGG
CGTCGCAGGTGATGAGGGTGAGCGGGCTCAACACGGCGTCGTCGTCGTCG
AGCGGCTCGTCCGACACGACCCAGGAGGAGGAGGAGGAGGCATCGCCCCC
AGACAGCGAGAAGACACAGCGGCACCGGTGCGAGAAGCTTGACACCGACC
AGGACTACATTGGCAAGATCGACGCCATGACGGAAGAGGTAGGGTCTGGT
CGTTGTCGTTGTCCAGTCGTAGTGTAGCAGCTGTTTTTATTTCTTTGCTC
CCAAGGCGATTGGTTGACCGCTTCAGGCGAGCGTGTCCTTTCGTTTCCTG
CGGTATTTCCTCTCACCTACAAGCTCTAACATAGTACTTCGTGATTTTTG
TTGTTGGGGACGCAAAAACACTCCCTCACCACTTCGCCACACCTCAATCA
GTCGTACATAAGTGACACACGCGTTCTACAAATGTGGCCCGCCTTTCTGC
AGAACACCGTGACACTTATCATGTTCATCCACCGGACGTGCTCGCTGTGT
CTCAGAAGTGCCATTGACTCTCTGCCCGTCAAAAATTCTCTCATAGACAC
ACTCAACACGCCCCCCCCCCCCAACCCACCGCCCATTGCGCCAGGTGTCG
TCGGTTTTGCAGAAGACTCTGGCTGCCGCGGCCAGCGTCGCTCCGTCCAC
CACGCCGCCGCTCACCCCCGCATCCACGACGTCGTCTCCGGCGGATTCCT
TCCGCGAGTCGACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15798:966..2929+

>mRNA_E-fasciculatus_F_contig15798.3987.1 ID=mRNA_E-fasciculatus_F_contig15798.3987.1|Name=mRNA_E-fasciculatus_F_contig15798.3987.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15798:966..2929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGGGCGCGTGGGAGCTGTGTGCTTCCCCCCCACGCCTACCCCGAC
CGGGACATGCGCTTTCGCCGCCTCTCTCGCCGATCCCGCCAAGACCGGCG
GCACAGTTTCCCGCGGTAGTGACGTGCTCGCCATCTCCCCCGTCGACTGG
GCGCTGCCGGCCTGGAGCTCGGCACCTTCGGCGTCTTCTCCTTCTGGTGC
CCGCAAGGGGGCGGACAAGGCCGGCGCCGCCATCTCGACCGTCGGGGAGC
AGCCCTCGTGTCCGATGCGCGCCAGCCTCAGAGAGAGACTGGAGAGCGGG
CCGGTGCCTTCGGCGTTTCGTTTCGCTGGCCGTGGTCGCTATTGCCCGCC
CCACCTCTGCCGTTCGCCGACGTTTTCGGGAACCGCTGCGGGAACGGCGA
CGGAAGAGGCGGCGGCGGGGCGGCGGGTGCAAGTGCTGCCCCCGGCACCG
CCTACGGTGCATGTGCGTCGTACTTCGGGTACGCATCGCACGCCGGTGGC
GACAAGCAGGACAAATATACGCTGGAGATGCCCGGGCGCGTGGGAGCTGT
GTGCTTCCCCCCCACGCCTACCCCGACCGGGACATGCGCTTTCGCCGCCT
CTCTCGCCGATCCCGCCAAGACCGGCGGCACAGTTTCCCGCGGTAGTGAC
GTGCTCGCCATCTCCCCCGTCGACTGGGCGCTGCCGGCCTGGAGCTCGGC
ACCTTCGGCGTCTTCTCCTTCTGGTGCCCGCAAGGGGGCGGACAAGGCCG
GCGCCGCCATCTCGACCGTCGGGGAGCAGCCCTCGTGTCCGATGCGCGCC
AGCCTCAGAGAGAGACTGGAGAGCGGGCCGGTGCCTTCGGCGTTTCGTTT
CGCTGGCCGTGGTCGCTATTGCCCGCCCCACCTCTGCCGTTCGCCGACGT
TTTCGGGAACCGCTGCGGGAACGGCGACGGAAGAGGCGGCGGCGGGGCGG
CGGGTGCAAGTGCTGCCCCCGGCACCGCCTACGGTGCATGTGCGTCGTAC
TTCGGGTACGCATCGCACGCCGGTGGCGACAAGCAGGACAAATATACGCT
GGAGAACATGGACCCCCTCGACGACCCGGACGGGAAGGAGTGGGTCGCCG
CGGCAGCCAGCCGCAAGGATGACGACGACGGCAAGAAGAAGACCGACGCC
ATCTACGGCAATCAGTCCGTGGACCAGTCCATAGAACATGGACCCCCTCG
ACGACCCGGACGGGAAGGAGTGGGTCGCCGCGGCAGCCAGCCGCAAGGAT
GACGACGACGGCAAGAAGAAGACCGACGCCATCTACGGCAATCAGTCCGT
GGACCAGTCCATAG
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