mRNA_E-fasciculatus_F_contig15788.3981.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15788.3981.1
Unique NamemRNA_E-fasciculatus_F_contig15788.3981.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15788.3981.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 1.050e-141
Identity = 269/335 (80.30%), Postives = 284/335 (84.78%), Query Frame = 1 
Query:  103 APRKSGSLRDTFSRRRGSSRSSLGTSTAAGAVLKGLGEAGGALMSMRDTEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALMADREAALCKINAKEEEFAKKEALLEEGKARATAEAQQKEELVTSLQVENQALQAALERLRLDFQEERSLRLQSGPAAAXXXXXXSKVRPSTPSRLGVFRRRGLTSRHGG---TPAAAAAAGEGGKVSSRREGVSRPPATPTRHNRLLSGPSFLNHHIRSTPGRSGSGXXXXXXXXXXXXXXXXXXATPGGVGWSSVHGGIGSRHSTAAGAAGAGRESWVQEGAGAQAAEGLPWVLNTDQVRAEVL 1098
            A RKSGSLRDTFSRRRGSSRSSL TSTAAGAVLKGLGEAGGALMSMRD+EISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALMADREAALCK++AKEEEFAKKEA+LEEGKARATAE QQ+EELVTSLQVEN+ALQAALERLRLDFQEERSLRLQSGPAAAXXXXXXSKVRPSTPSRLG+FRRRGLTSR GG           GE G+ +SR   V+RPPATP+RH+RLLSG SFLNHHIRSTPGR G G                  ATPGGVGWSSVH GIGSRHST A AAG G E+WVQE AGAQA EGLPW+LNTDQV   +L
Sbjct: 1034 ALRKSGSLRDTFSRRRGSSRSSLSTSTAAGAVLKGLGEAGGALMSMRDSEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALMADREAALCKLSAKEEEFAKKEAVLEEGKARATAEVQQQEELVTSLQVENEALQAALERLRLDFQEERSLRLQSGPAAAXXXXXXSKVRPSTPSRLGIFRRRGLTSRDGGGTXXXXXXXXXGEEGQPASRHGSVARPPATPSRHSRLLSGSSFLNHHIRSTPGRPGQGGRLAGGSGAIAAA-----ATPGGVGWSSVHRGIGSRHSTTAAAAGGGSETWVQEVAGAQAVEGLPWILNTDQVLNHLL 1363
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BLAST of mRNA_E-fasciculatus_F_contig15788.3981.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 2.790e-81
Identity = 160/168 (95.24%), Postives = 166/168 (98.81%), Query Frame = 1 
Query:  103 APRKSGSLRDTFSRRRGSSRSSLGTSTAAGAVLKGLGEAGGALMSMRDTEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALMADREAALCKINAKEEEFAKKEALLEEGKARATAEAQQKEELVTSLQVENQALQAALERLRLDFQEERSLRLQSGPAAA 606
            APRKSGSLRDTFS+RRGSSRSSLGTSTAAGAVLKGLGEAGGALMSMRD+EISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGAL+ADREAALCK+NAKEEEF KKEA+LEEGKARATAE QQKEELVTSLQVEN+ALQAALERLRLDFQEERSLRLQSGPAAA
Sbjct:  974 APRKSGSLRDTFSKRRGSSRSSLGTSTAAGAVLKGLGEAGGALMSMRDSEISRLRRAYARSELSREEMKRCLRALAVQLREGEDRTGALLADREAALCKLNAKEEEFTKKEAVLEEGKARATAEVQQKEELVTSLQVENEALQAALERLRLDFQEERSLRLQSGPAAA 1141
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15788.3981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAS6_9PHAE1.050e-14180.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK06_ECTSI2.790e-8195.24CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15788contigE-fasciculatus_F_contig15788:120..2554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.0
Seed ortholog evalue4.1e-73
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-18_002930.1
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size1104
Cds size1104
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15788.3981.1prot_E-fasciculatus_F_contig15788.3981.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15788 120..2554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928048.7213151-CDS-E-fasciculatus_F_contig15788:119..4601622928048.7213151-CDS-E-fasciculatus_F_contig15788:119..460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 120..460 +
1695995802.458433-CDS-E-fasciculatus_F_contig15788:119..4601695995802.458433-CDS-E-fasciculatus_F_contig15788:119..460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 120..460 +
1622928048.7398484-CDS-E-fasciculatus_F_contig15788:1178..13231622928048.7398484-CDS-E-fasciculatus_F_contig15788:1178..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 1179..1323 +
1695995802.4737806-CDS-E-fasciculatus_F_contig15788:1178..13231695995802.4737806-CDS-E-fasciculatus_F_contig15788:1178..1323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 1179..1323 +
1622928048.7653105-CDS-E-fasciculatus_F_contig15788:1936..25541622928048.7653105-CDS-E-fasciculatus_F_contig15788:1936..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 1937..2554 +
1695995802.4818046-CDS-E-fasciculatus_F_contig15788:1936..25541695995802.4818046-CDS-E-fasciculatus_F_contig15788:1936..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15788 1937..2554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15788.3981.1

>prot_E-fasciculatus_F_contig15788.3981.1 ID=prot_E-fasciculatus_F_contig15788.3981.1|Name=mRNA_E-fasciculatus_F_contig15788.3981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=368bp
PSLQRRSKANNDGGKDSSQEPPPFSSSSKPPPPPAPRKSGSLRDTFSRRR
GSSRSSLGTSTAAGAVLKGLGEAGGALMSMRDTEISRLRRAYARSELSRE
EMKRCLRALAVQLREGEDRTGALMADREAALCKINAKEEEFAKKEALLEE
GKARATAEAQQKEELVTSLQVENQALQAALERLRLDFQEERSLRLQSGPA
AAAAAAAASKVRPSTPSRLGVFRRRGLTSRHGGTPAAAAAAGEGGKVSSR
REGVSRPPATPTRHNRLLSGPSFLNHHIRSTPGRSGSGGGMLAGGGGGGS
GAIAAAATPGGVGWSSVHGGIGSRHSTAAGAAGAGRESWVQEGAGAQAAE
GLPWVLNTDQVRAEVLRP
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mRNA from alignment at E-fasciculatus_F_contig15788:120..2554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15788.3981.1 ID=mRNA_E-fasciculatus_F_contig15788.3981.1|Name=mRNA_E-fasciculatus_F_contig15788.3981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2435bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15788:120..2554+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTCCCTCCAAAGGCGGAGCAAGGCCAACAACGACGGCGGCAAGGATAG
CAGCCAGGAGCCGCCGCCCTTCTCCTCCTCATCGAAGCCGCCGCCGCCCC
CCGCCCCGCGGAAGAGCGGTAGCCTCAGGGACACGTTCTCGAGACGGCGG
GGCTCCTCCCGCTCCTCCCTCGGCACCTCTACCGCGGCGGGTGCGGTCCT
GAAGGGGCTTGGAGAGGCCGGGGGCGCTCTGATGTCCATGCGGGACACGG
AGATATCGCGGCTGAGGCGGGCCTACGCGAGGTCGGAGCTCTCGAGGGAG
GAGATGAAGCGCTGCCTTCGAGCCCTAGCGGTCCAACTCAGGTGTGTTAG
TGTTGTGTGTTTTTGGTGTGATGGCATGCTAGTGAAGAGAGTCCTCACAG
CAGTCTCAGTGTGCGGCAGATATCCGGGAAAGGCTTCGCCGTAAGGCCAT
GGTCTGGGACCCCGCGAGGGGGGGGGCTAGGCTATTCTCCGGAGTGAGGA
CGTAGTGTCGTCTTGGCTTGCGGTCGTTTGTGTGTACCGGGAGTACGCAA
GGACTGCCATAGCCGCGTTTGCGAGAGAGAGGCCTTGTTGGAAACAGCTA
GGGGCGGGGTTCGGGTGAGTACTGTATAGGAGTACGACACAAGATAACAC
ACCCCCTGGACCGATTTTCAAAGCTCGTTTTTTCAACAGCAGAAAGAGTG
TCAGCACCGAAAAACGGCGGCGTCGAAGCCGTCCGGTCGAGAGAGAGCTC
TCCGAAAACGTTTCGTTTCGTTTATGTATCCTCTTCATCGTGGAGTAATC
AATGATACAACAGCTTTGAAAATCGTTCGAGGGGGTGTGTTGTATTCCGT
CGTGTAAGGTAGTGCCGCACACGAGGAAAGGGGACGAAACGTTGCTGCAC
GATTGTAGTTTGTGAGATTTAAGCTGTAAAACCAATTGGAAAAATAAAAC
AGGTGAGGTCAGCCCGGAGGGTGGGTGCACAATTAAATGATTGCCACATT
TGTTCGGTTGTCTGAGAACACAACTGGTTGTGCGCCGATGTTGGGCGACG
TGCTTGCAGGGAAGGAGAGGACAGAACCGGGGCGCTCATGGCCGATCGCG
AGGCGGCGCTGTGCAAGATTAACGCCAAGGAGGAGGAGTTCGCGAAGAAG
GAGGCGCTGCTTGAGGAGGGAAAGGCTCGCGCAACCGCTGAGGCACAACA
AAAGGTGTGGAACCTGTTCGTTCATTTCTGTGTCTTTATTTTTCGAGCGA
TGAACCGCGGTATAACCGACTGGTCAATGAAGAGGCGTCAGGACGGCTGG
CTGAAACAGGCACTTATTTTTCAGATCTTGTTTGTGTGTGTGTTGGCTTA
TAGCGTCGACCGCGCTAACCAATGGAGAGACGCCAGCCTCAGTGCGTCGG
TTGATTACAGAAAACGCTTCTAAAGGTCTTGTGTGTGTCTCTCTTCATTA
TTTGCATCGCCCGCGCTAACCGGCTGACCGATGCAAATACGTCAGTCTCA
GTGCGGTTGAAAGCACAAAGCACTTGTAAATGCCATGAACTGGGACGACC
CCGTGAGGGGGTTGCATATGTTTTGTTTTTTTTTGCATATGTGTGTGTGT
GTATGTTTGTCTGTGTGTGATTGCCTGTGTGTGTTTTGGATCTGCATCGG
CCGCGCCATGACCGGCTGGCCGATGAAATACGTTATTCTCAGCGAGACCA
GAGGGTTAAACACTGACACCTACCGCGGTCGTGCTCCCGCGCTTGCTCAT
CCCCCCACCGCCTGCTGCCGTGGCCGGTCGGCCTCCCTTTCCCTTTCTTT
GGCTGGGGCGCACGCAGGAGGAGCTTGTGACCAGCCTTCAGGTGGAGAAC
CAAGCGCTGCAGGCCGCTCTCGAACGGCTGCGGCTCGACTTCCAGGAGGA
GAGGAGCCTGCGCCTCCAAAGCGGCCCGGCGGCGGCCGCCGCGGCCGCCG
CCGCCTCAAAGGTACGGCCGAGCACCCCGTCTCGGCTAGGGGTCTTCAGA
AGGAGGGGGCTGACGAGCAGACACGGCGGCACTCCGGCGGCAGCAGCGGC
GGCGGGAGAAGGAGGGAAGGTGTCATCACGTCGCGAGGGCGTTTCCCGGC
CACCGGCTACGCCCACCCGACACAACAGACTCCTGTCCGGCCCTTCTTTT
CTGAACCACCACATCAGGTCGACTCCTGGAAGGTCCGGGTCAGGCGGCGG
GATGTTGGCAGGGGGAGGAGGCGGCGGCAGCGGCGCGATAGCGGCGGCGG
CGACCCCGGGGGGTGTCGGTTGGAGCAGCGTTCACGGCGGGATAGGGTCG
AGGCACAGCACAGCGGCGGGTGCGGCGGGAGCCGGGCGTGAGAGCTGGGT
CCAGGAAGGGGCAGGAGCGCAGGCCGCGGAAGGACTGCCGTGGGTCCTCA
ACACTGATCAGGTTCGGGCTGAGGTGTTACGACCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15788:120..2554+

>mRNA_E-fasciculatus_F_contig15788.3981.1 ID=mRNA_E-fasciculatus_F_contig15788.3981.1|Name=mRNA_E-fasciculatus_F_contig15788.3981.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2208bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15788:120..2554+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTCCCTCCAAAGGCGGAGCAAGGCCAACAACGACGGCGGCAAGGATAG
CAGCCAGGAGCCGCCGCCCTTCTCCTCCTCATCGAAGCCGCCGCCGCCCC
CCGCCCCGCGGAAGAGCGGTAGCCTCAGGGACACGTTCTCGAGACGGCGG
GGCTCCTCCCGCTCCTCCCTCGGCACCTCTACCGCGGCGGGTGCGGTCCT
GAAGGGGCTTGGAGAGGCCGGGGGCGCTCTGATGTCCATGCGGGACACGG
AGATATCGCGGCTGAGGCGGGCCTACGCGAGGTCGGAGCTCTCGAGGGAG
GAGATGAAGCGCTGCCTTCGAGCCCTAGCGGTCCAACTCAGCCGTCCCTC
CAAAGGCGGAGCAAGGCCAACAACGACGGCGGCAAGGATAGCAGCCAGGA
GCCGCCGCCCTTCTCCTCCTCATCGAAGCCGCCGCCGCCCCCCGCCCCGC
GGAAGAGCGGTAGCCTCAGGGACACGTTCTCGAGACGGCGGGGCTCCTCC
CGCTCCTCCCTCGGCACCTCTACCGCGGCGGGTGCGGTCCTGAAGGGGCT
TGGAGAGGCCGGGGGCGCTCTGATGTCCATGCGGGACACGGAGATATCGC
GGCTGAGGCGGGCCTACGCGAGGTCGGAGCTCTCGAGGGAGGAGATGAAG
CGCTGCCTTCGAGCCCTAGCGGTCCAACTCAGGGAAGGAGAGGACAGAAC
CGGGGCGCTCATGGCCGATCGCGAGGCGGCGCTGTGCAAGATTAACGCCA
AGGAGGAGGAGTTCGCGAAGAAGGAGGCGCTGCTTGAGGAGGGAAAGGCT
CGCGCAACCGCTGAGGCACAACAAAAGGGAAGGAGAGGACAGAACCGGGG
CGCTCATGGCCGATCGCGAGGCGGCGCTGTGCAAGATTAACGCCAAGGAG
GAGGAGTTCGCGAAGAAGGAGGCGCTGCTTGAGGAGGGAAAGGCTCGCGC
AACCGCTGAGGCACAACAAAAGGAGGAGCTTGTGACCAGCCTTCAGGTGG
AGAACCAAGCGCTGCAGGCCGCTCTCGAACGGCTGCGGCTCGACTTCCAG
GAGGAGAGGAGCCTGCGCCTCCAAAGCGGCCCGGCGGCGGCCGCCGCGGC
CGCCGCCGCCTCAAAGGTACGGCCGAGCACCCCGTCTCGGCTAGGGGTCT
TCAGAAGGAGGGGGCTGACGAGCAGACACGGCGGCACTCCGGCGGCAGCA
GCGGCGGCGGGAGAAGGAGGGAAGGTGTCATCACGTCGCGAGGGCGTTTC
CCGGCCACCGGCTACGCCCACCCGACACAACAGACTCCTGTCCGGCCCTT
CTTTTCTGAACCACCACATCAGGTCGACTCCTGGAAGGTCCGGGTCAGGC
GGCGGGATGTTGGCAGGGGGAGGAGGCGGCGGCAGCGGCGCGATAGCGGC
GGCGGCGACCCCGGGGGGTGTCGGTTGGAGCAGCGTTCACGGCGGGATAG
GGTCGAGGCACAGCACAGCGGCGGGTGCGGCGGGAGCCGGGCGTGAGAGC
TGGGTCCAGGAAGGGGCAGGAGCGCAGGCCGCGGAAGGACTGCCGTGGGT
CCTCAACACTGATCAGGTTCGGGCTGAGGTGTTACGACCGGAGGAGCTTG
TGACCAGCCTTCAGGTGGAGAACCAAGCGCTGCAGGCCGCTCTCGAACGG
CTGCGGCTCGACTTCCAGGAGGAGAGGAGCCTGCGCCTCCAAAGCGGCCC
GGCGGCGGCCGCCGCGGCCGCCGCCGCCTCAAAGGTACGGCCGAGCACCC
CGTCTCGGCTAGGGGTCTTCAGAAGGAGGGGGCTGACGAGCAGACACGGC
GGCACTCCGGCGGCAGCAGCGGCGGCGGGAGAAGGAGGGAAGGTGTCATC
ACGTCGCGAGGGCGTTTCCCGGCCACCGGCTACGCCCACCCGACACAACA
GACTCCTGTCCGGCCCTTCTTTTCTGAACCACCACATCAGGTCGACTCCT
GGAAGGTCCGGGTCAGGCGGCGGGATGTTGGCAGGGGGAGGAGGCGGCGG
CAGCGGCGCGATAGCGGCGGCGGCGACCCCGGGGGGTGTCGGTTGGAGCA
GCGTTCACGGCGGGATAGGGTCGAGGCACAGCACAGCGGCGGGTGCGGCG
GGAGCCGGGCGTGAGAGCTGGGTCCAGGAAGGGGCAGGAGCGCAGGCCGC
GGAAGGACTGCCGTGGGTCCTCAACACTGATCAGGTTCGGGCTGAGGTGT
TACGACCG
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