mRNA_E-fasciculatus_F_contig15777.3973.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15777.3973.1
Unique NamemRNA_E-fasciculatus_F_contig15777.3973.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.160e-24
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   31 TVSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASDDELWQDMYERTQ 186
            TVS VGGDEYVCPFLFDFLTI ELGRAASVCSTWRTNA+DDELW+++YERTQ
Sbjct:    2 TVSVVGGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWREIYERTQ 53
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BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   34 VSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASDDELWQDMYERTQV 189
            VS V GDEYVCPFLFDFLTI ELGRAASVCSTWRTNA+DDELW+D+YERTQV
Sbjct:   18 VSVVSGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWRDIYERTQV 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5J6_ECTSI9.160e-2488.46F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK18_9PHAE1.250e-2388.46F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15777contigE-fasciculatus_F_contig15777:2697..2930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.6e-20
Seed eggNOG ortholog2880.D7G5J6
KEGG koko:K10263,ko:K22382
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0293@1,KOG0293@2759
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-22_000900.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928047.8461428-CDS-E-fasciculatus_F_contig15777:2696..29301622928047.8461428-CDS-E-fasciculatus_F_contig15777:2696..2930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15777 2697..2930 -
1695995802.1150413-CDS-E-fasciculatus_F_contig15777:2696..29301695995802.1150413-CDS-E-fasciculatus_F_contig15777:2696..2930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15777 2697..2930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15777.3973.1prot_E-fasciculatus_F_contig15777.3973.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15777 2697..2930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15777.3973.1

>prot_E-fasciculatus_F_contig15777.3973.1 ID=prot_E-fasciculatus_F_contig15777.3973.1|Name=mRNA_E-fasciculatus_F_contig15777.3973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
SCPKTQTNNTTVSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASD
DELWQDMYERTQVQPAQPNAVYVGSSN*
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mRNA from alignment at E-fasciculatus_F_contig15777:2697..2930-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15777.3973.1 ID=mRNA_E-fasciculatus_F_contig15777.3973.1|Name=mRNA_E-fasciculatus_F_contig15777.3973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15777:2697..2930- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTGTCCCAAAACGCAAACAAACAACACGACAGTCTCCGCCGTGGGCGG
CGATGAGTACGTCTGCCCCTTCTTGTTCGATTTCCTCACCATCCGCGAGC
TTGGGAGGGCGGCCTCAGTCTGCAGCACGTGGAGGACGAACGCCTCCGAC
GATGAGCTGTGGCAGGACATGTACGAGAGGACACAGGTACAGCCGGCACA
GCCGAATGCAGTCTACGTAGGCTCTTCGAATTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15777:2697..2930-

>mRNA_E-fasciculatus_F_contig15777.3973.1 ID=mRNA_E-fasciculatus_F_contig15777.3973.1|Name=mRNA_E-fasciculatus_F_contig15777.3973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15777:2697..2930- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTGTCCCAAAACGCAAACAAACAACACGACAGTCTCCGCCGTGGGCGG
CGATGAGTACGTCTGCCCCTTCTTGTTCGATTTCCTCACCATCCGCGAGC
TTGGGAGGGCGGCCTCAGTCTGCAGCACGTGGAGGACGAACGCCTCCGAC
GATGAGCTGTGGCAGGACATGTACGAGAGGACACAGGTACAGCCGGCACA
GCCGAATGCAGTCTACGTAGGCTCTTCGAATTAATCGTGTCCCAAAACGC
AAACAAACAACACGACAGTCTCCGCCGTGGGCGGCGATGAGTACGTCTGC
CCCTTCTTGTTCGATTTCCTCACCATCCGCGAGCTTGGGAGGGCGGCCTC
AGTCTGCAGCACGTGGAGGACGAACGCCTCCGACGATGAGCTGTGGCAGG
ACATGTACGAGAGGACACAGGTACAGCCGGCACAGCCGAATGCAGTCTAC
GTAGGCTCTTCGAATTAA
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