mRNA_E-fasciculatus_F_contig15773.3971.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: D7FV25_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV25_ECTSI) HSP 1 Score: 112 bits (281), Expect = 3.650e-27 Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 25 NEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSI 183
NEFLSD YNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALT S++
Sbjct: 29 NEFLSDTYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTDSTV 81
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A6H5KNX9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX9_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.670e-27 Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 25 NEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSI 183
NEFLSD YNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALT S++
Sbjct: 29 NEFLSDTYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTDSTV 81
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A2EBM4_TRIVA (RING-type domain-containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2EBM4_TRIVA) HSP 1 Score: 51.2 bits (121), Expect = 7.250e-6 Identity = 26/69 (37.68%), Postives = 34/69 (49.28%), Query Frame = 1
Query: 28 EFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSIPQIRGSLRHSPKPDNCL 234
E L D + PCGH FCR CI++ L + CP C P K++L L +G + P PDN L
Sbjct: 84 EELHDPVSTPCGHVFCRRCIEEWLLRSDVCPYCNTPKMDKNSLLPILD-------QGHVEDRPDPDNSL 145
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8D3CUS1_SCOMX (RING-type domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3CUS1_SCOMX) HSP 1 Score: 48.5 bits (114), Expect = 2.700e-5 Identity = 31/79 (39.24%), Postives = 37/79 (46.84%), Query Frame = 1
Query: 37 SDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLK----------MALTVSSIPQIRGSLRHSPKPDNCLSAV 243
SD LPCGHSFCRECI +L + CP C +D LK M +T SS+ R SPK C S +
Sbjct: 32 SDPVILPCGHSFCRECISLSLKSQRQCPQCRADV-PEDDLKWRTRLSLWGLMTVTCSSLCGRRCFRSSSPKQSCCHSKM 109
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6WWH2_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WWH2_9GOBI) HSP 1 Score: 50.4 bits (119), Expect = 2.940e-5 Identity = 23/73 (31.51%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 28 EFLSDAYNLPCGHSFCRECIDDALAE--RNSCPDCMNPAWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLS 237
+ L D LPCGHS+CR+CI D + R+SCP C + L +T++++ + ++ + +P D+C +
Sbjct: 14 DLLKDPVTLPCGHSYCRDCIQDHWGKQVRSSCPQCRQSFSPRPVLNRNITIAALVEDLKRTGLTAPPADHCYA 86
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6UJ20_9GOBI (RING-type domain-containing protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UJ20_9GOBI) HSP 1 Score: 48.1 bits (113), Expect = 3.000e-5 Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 1
Query: 28 EFLSDAYNLPCGHSFCRECIDDALAE--RNSCPDCMNPAWQKDTLKMALTVSSI 183
+ L D LPCGHS+CR+CI D + R+SCP C + L +T++++
Sbjct: 17 DLLKDPVTLPCGHSYCRDCIQDHWDQQVRSSCPQCRKSFCPRPVLNRNITIAAL 70
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A3P9NAZ6_POERE (Nuclear factor 7, ovary-like n=5 Tax=Poecilia TaxID=8080 RepID=A0A3P9NAZ6_POERE) HSP 1 Score: 50.1 bits (118), Expect = 4.030e-5 Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1
Query: 37 SDAYNLPCGHSFCRECIDDALAERNSCPDCMNP-AWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLSAVC 246
+D NLPCGHSFCR+CI + LA + CP C A + L ++ + S+ + + +P L+AVC
Sbjct: 20 TDPVNLPCGHSFCRQCISEVLATQQHCPVCGTAVALEAANLPTSIVLKSLAEKAKAKPDKGKQPTAELAAVC 91
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A8C6UIB6_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UIB6_9GOBI) HSP 1 Score: 50.1 bits (118), Expect = 4.060e-5 Identity = 23/74 (31.08%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 28 EFLSDAYNLPCGHSFCRECIDDALAER--NSCPDCMNPAWQKDTLKMALTVSSIPQ-IRGSLRHSPKPDNCLSA 240
+ L D LPCGHS+CR+CI D ++ +SCP C + L +T++++ + ++ + +P D+C +A
Sbjct: 16 DLLKDPVTLPCGHSYCRDCIQDHWDQQVMSSCPQCRQSFSPRPVLNRNITIAALVEDLKRTGLTAPPADHCYAA 89
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: A0A540MXU0_MALBA (RING-type domain-containing protein n=2 Tax=Malus TaxID=3749 RepID=A0A540MXU0_MALBA) HSP 1 Score: 49.3 bits (116), Expect = 5.090e-5 Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1
Query: 58 CGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSS 180
CGH FC+ECID A+A ++ CP C + ++DT+++ L SS
Sbjct: 172 CGHIFCKECIDTAIATQHKCPTCRHKLRKRDTIRVYLPSSS 212
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Match: M3D138_SPHMS (RING-type domain-containing protein n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=M3D138_SPHMS) HSP 1 Score: 48.1 bits (113), Expect = 5.450e-5 Identity = 25/77 (32.47%), Postives = 34/77 (44.16%), Query Frame = 1
Query: 13 LCRSNEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTVSSIPQIRGSLRHSPKPDNCLSAV 243
+C +S A PCGH FCR C+D + CP C P +Q L S Q+R L H P+ C + +
Sbjct: 16 ICFEPLLISCAIRTPCGHRFCRRCLDQWWDRSSLCPLCRQPLFQFPPAHAYLRYVS--QVRAQLSHDPEIFICFTDI 90 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15773.3971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15773.3971.1 >prot_E-fasciculatus_F_contig15773.3971.1 ID=prot_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp MLLVLCRSNEFLSDAYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDback to top mRNA from alignment at E-fasciculatus_F_contig15773:2607..2858+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15773.3971.1 ID=mRNA_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=252bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15773:2607..2858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15773:2607..2858+ >mRNA_E-fasciculatus_F_contig15773.3971.1 ID=mRNA_E-fasciculatus_F_contig15773.3971.1|Name=mRNA_E-fasciculatus_F_contig15773.3971.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15773:2607..2858+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |