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Homology
BLAST of mRNA_E-fasciculatus_F_contig15770.3970.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI) HSP 1 Score: 148 bits (374), Expect = 6.890e-38 Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1
Query: 73 VSPGGRERXXXXXXXXXXXXXXXXIFANGDIYDGDFRRDQACGQGVYRTASLGNGAGDCYVGGWEADRRHGKGLLRWENGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGH 525
VSPGGRER XXXXXXXXXXXXXX FANGD+YDGDFRRD+ACGQGVYRTAS GNGAGDCYVGGWEADRRHGKG LRWENGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGH
Sbjct: 605 VSPGGRERYVXXXXXXXXXXXXXXXFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGRLRWENGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGH 755
BLAST of mRNA_E-fasciculatus_F_contig15770.3970.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE) HSP 1 Score: 140 bits (354), Expect = 4.800e-37 Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1
Query: 145 IFANGDIYDGDFRRDQACGQGVYRTASLGNGAGDCYVGGWEADRRHGKGLLRWENGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGFGEIKYEVAGH 525
IFANGD+YDGDFRRD+ACGQGVYRTAS GNGAGDCYVGGWEADRRHGKGLLRWENGSR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISG GEIKYEVAGH
Sbjct: 29 IFANGDVYDGDFRRDRACGQGVYRTASSGNGAGDCYVGGWEADRRHGKGLLRWENGSRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWGVISGLGEIKYEVAGH 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 151.4 |
| Seed ortholog evalue | 4.4e-34 |
| Seed eggNOG ortholog | 2880.D7FWY6 |
| KEGG ko | ko:K03283 |
| KEGG TC | 1.A.33.1 |
| KEGG Pathway | ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169 |
| KEGG Module | M00353,M00355 |
| EggNOG free text desc. | Translation initiation factor IF-2, N-terminal region |
| EggNOG OGs | COG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 582 |
| Cds size | 582 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15770.3970.1 >prot_E-fasciculatus_F_contig15770.3970.1 ID=prot_E-fasciculatus_F_contig15770.3970.1|Name=mRNA_E-fasciculatus_F_contig15770.3970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
RTANDAGRFAGQWERNMQQGFGVYVSPGGRERYVGEWWNGKKHGYGRYIF
ANGDIYDGDFRRDQACGQGVYRTASLGNGAGDCYVGGWEADRRHGKGLLR
WENGSRYEGYWKAGAIEGKGVFDYAQGDKYRGEFKASRKHGNGVYVWANG
DSYSGEFCWGVISGFGEIKYEVAGHRYRGYWKDNRKHGLGTFW* back to topmRNA from alignment at E-fasciculatus_F_contig15770:499..2857+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15770.3970.1 ID=mRNA_E-fasciculatus_F_contig15770.3970.1|Name=mRNA_E-fasciculatus_F_contig15770.3970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2359bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15770:499..2857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGACGGCGAATGACGCGGGCAGGTTTGCAGGGCAGTGGGAGCGCAACAT
GCAACAGGGGTTCGGGGTGTACGTGTCCCCGGGGGGGCGAGAGCGTTACG
TGGGCGAATGGTGGAATGGCAAGAAGCACGGCTACGGCAGGTGACTTTCT
TCAACATTGACAGGCATCGTTGTAAACGTTCGTTCATGCTGCTCTCTGGA
TTGTCATTGGTTGGGGATAGCGAAGAAGCCGTGCCTCTTCACGAAACGGA
GACCCATGCCTCTTCCCAAAACGGAGACACCGTATAAAGGGTGTCAAGTA
CAATTTATGATCTCTCAACCACGTGCCAGGCACACGGCAATACAGTAGAG
CCGATGTGACCACAATCGGAGTGAAAACACCAACAGGACAAACAAACTTG
GGGCGGGAACGACGTCCCAGTGGGCTTGATTCATCCTTCCGAGACAACAA
AAGCACCTCCCCGCCGCTACCTCCCAACATTTGTAGGGATGCGAGGTCCC
TGACCTCACGGCTACGGCATTCGTTTACATGCGTACCCCCCCCACCCGAC
CCCCGCACACAAACCTTGGAAACACGAACGAACGAACGAACGAACGAACG
AACAAACGAAGATACATCTTCGCGAACGGGGACATCTACGACGGAGATTT
CCGACGAGACCAGGCGTGCGGGCAGGGGGTCTACCGGACCGCCTCTTTGG
GCAACGGCGCGGGGGACTGTTATGTCGGGGGCTGGGAGGCCGATCGCCGG
CACGGAAAGGGGCTGCTGCGGTGGGAGAACGGCAGCAGATACGAGGTGTG
CATCGCCATCGTGTGGTGTGGTTGGAGAGAAGTTTTCACAGACCGCTACT
ACTGCTGTTGTGCTGTAGTGTGATGAGAGAGAGTTTTTACAGACCGCGCG
CTATGTACTGCTGTTGATGTTTCACTTTCTGCGGTTCCGAGACACGGGGT
GCGGTGGTGGGAAAGGTGCTGTTGTGTGGAGAGAGCGGCGGGTTAGCAAG
AGAGAGAAATATGAGAGAACATCGTTTTTCAGCCTGCCACTAGTGATCGA
GTATTTCCCGAGGAGCGGGGAGCGGGGGTGTGTGTATAGATGATGGCCGA
CACATGTAAGGCGCGAGAAAATTTCGGCAAGTTGAGGTATTGTTGTTGAT
GTCGGTGTCGTACCTGGTCTGTAGCACCCAAGGGATCTTCATGTTCATTT
GGTGATGAAGCTCAGCCGCACAACAAGGTGCCTAGAAGTGAACTACCCCC
TCTCCGAACCAGTGGAGGCGGGAAAAAAGGCAACGGAAGGTATGGGGAGG
GTATGGTTGCTCTAAGAACACATTCACATTCCCAAGATAACCAGCTTTGG
TGTTGCCATAGCCATTCAATTTCTGCCGCCACCGCCACCACTACCATCAC
CACCACCAAAAACAACAACAACAATGTTTGCCACAGGGCTACTGGAAAGC
GGGGGCCATAGAGGGGAAAGGCGTGTTCGACTACGCGCAGGGGGACAAGT
ATCGCGGAGAGTTTAAGGCCAGCAGGAAGCACGGCAACGGGGTCTACGTC
TGGGCAAACGGCGACAGGTAAAGCAGCGAGAACGACGACAATAGCAGCAG
CAGCATCAGCAACTAAAACACAACATCAACCGTGTTCTCAACCGATAGCA
TCAACAACAGAAGCAGCAGCAAACAACACCAAGAGCAACGTCGTACCAGC
TGCTCACGTTTGGTTCTGCTTCCGACCGTCCCCTCTTCCATCTTACTTCT
TTGGGGAGGCGGTTTTCGATCACGTTGGCACCGTATGCAGCTGTTACCGA
CGTAGGTGCCCGCCGGCGAGCGGACTAGAAGCGTGCCATCACCTGGACGA
AGCGAAGAACTGTGTCGGGGTGGTCTCGCCGCGCTCGATCCGCCTTATAC
CCAAAACGTCCCACAAGAAAAGTATCATGGGAGCATTTCGGCTCGATCTT
TTGTGCCTTCCCTCCATGACACGCACGCCTGCAACCGTAGACCAGTTTTT
TCTTCCCAGATACCAGGGAAAAAAACGAAAGAGAACAAAAAAAAAGCTCA
CGCAAAACGAAACGAGCTCGTGAAAAATTGTACAAGGAGGCTTTGAGGGG
GTTTCTCCCCCACGCAAAGGGTTCACACATTTTTCAGTCCTACAGCCTGC
CGGTGATGGCGCGTGCACACAGTTCTTGATTCAAGCCCCTGCTGACGACG
ACGATGACGATATTAAATCGAACCCCCCGCAGCTACAGCGGCGAGTTCTG
CTGGGGCGTGATCTCCGGGTTCGGGGAGATCAAGTACGAGGTCGCGGGGC
ACCGCTACAGGGGATACTGGAAGGACAACCGGAAGCATGGCTTGGGGACG
TTCTGGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15770:499..2857+ >mRNA_E-fasciculatus_F_contig15770.3970.1 ID=mRNA_E-fasciculatus_F_contig15770.3970.1|Name=mRNA_E-fasciculatus_F_contig15770.3970.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15770:499..2857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGACGGCGAATGACGCGGGCAGGTTTGCAGGGCAGTGGGAGCGCAACAT
GCAACAGGGGTTCGGGGTGTACGTGTCCCCGGGGGGGCGAGAGCGTTACG
TGGGCGAATGGTGGAATGGCAAGAAGCACGGCTACGGCAGCGGACGGCGA
ATGACGCGGGCAGGTTTGCAGGGCAGTGGGAGCGCAACATGCAACAGGGG
TTCGGGGTGTACGTGTCCCCGGGGGGGCGAGAGCGTTACGTGGGCGAATG
GTGGAATGGCAAGAAGCACGGCTACGGCAGATACATCTTCGCGAACGGGG
ACATCTACGACGGAGATTTCCGACGAGACCAGGCGTGCGGGCAGGGGGTC
TACCGGACCGCCTCTTTGGGCAACGGCGCGGGGGACTGTTATGTCGGGGG
CTGGGAGGCCGATCGCCGGCACGGAAAGGGGCTGCTGCGGTGGGAGAACG
GCAGCAGATACGAGATACATCTTCGCGAACGGGGACATCTACGACGGAGA
TTTCCGACGAGACCAGGCGTGCGGGCAGGGGGTCTACCGGACCGCCTCTT
TGGGCAACGGCGCGGGGGACTGTTATGTCGGGGGCTGGGAGGCCGATCGC
CGGCACGGAAAGGGGCTGCTGCGGTGGGAGAACGGCAGCAGATACGAGGG
CTACTGGAAAGCGGGGGCCATAGAGGGGAAAGGCGTGTTCGACTACGCGC
AGGGGGACAAGTATCGCGGAGAGTTTAAGGCCAGCAGGAAGCACGGCAAC
GGGGTCTACGTCTGGGCAAACGGCGACAGGGCTACTGGAAAGCGGGGGCC
ATAGAGGGGAAAGGCGTGTTCGACTACGCGCAGGGGGACAAGTATCGCGG
AGAGTTTAAGGCCAGCAGGAAGCACGGCAACGGGGTCTACGTCTGGGCAA
ACGGCGACAGCTACAGCGGCGAGTTCTGCTGGGGCGTGATCTCCGGGTTC
GGGGAGATCAAGTACGAGGTCGCGGGGCACCGCTACAGGGGATACTGGAA
GGACAACCGGAAGCATGGCTTGGGGACGTTCTGGTGACTACAGCGGCGAG
TTCTGCTGGGGCGTGATCTCCGGGTTCGGGGAGATCAAGTACGAGGTCGC
GGGGCACCGCTACAGGGGATACTGGAAGGACAACCGGAAGCATGGCTTGG
GGACGTTCTGGTGA back to top
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