mRNA_E-fasciculatus_F_contig15755.3963.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15755.3963.1
Unique NamemRNA_E-fasciculatus_F_contig15755.3963.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15755.3963.1 vs. uniprot
Match: D7FN09_ECTSI (EstExt_Genewise1.C_60040 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN09_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-7
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  241 QVGASSLRGHQVTVPDTPWSDIGGMEE 321
            +VGASSLRGHQVTVPDTPWSDIGGMEE
Sbjct:  774 KVGASSLRGHQVTVPDTPWSDIGGMEE 800
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15755.3963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN09_ECTSI1.460e-796.30EstExt_Genewise1.C_60040 n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15755contigE-fasciculatus_F_contig15755:2214..2594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15755.3963.1prot_E-fasciculatus_F_contig15755.3963.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15755 2224..2535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.5905213-UTR-E-fasciculatus_F_contig15755:2213..22231622928044.5905213-UTR-E-fasciculatus_F_contig15755:2213..2223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15755 2214..2223 +
1695995801.6308496-UTR-E-fasciculatus_F_contig15755:2213..22231695995801.6308496-UTR-E-fasciculatus_F_contig15755:2213..2223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15755 2214..2223 +
1622928044.6502483-UTR-E-fasciculatus_F_contig15755:2535..25941622928044.6502483-UTR-E-fasciculatus_F_contig15755:2535..2594Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15755 2536..2594 +
1695995801.6494634-UTR-E-fasciculatus_F_contig15755:2535..25941695995801.6494634-UTR-E-fasciculatus_F_contig15755:2535..2594Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15755 2536..2594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.6028962-CDS-E-fasciculatus_F_contig15755:2223..25351622928044.6028962-CDS-E-fasciculatus_F_contig15755:2223..2535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15755 2224..2535 +
1695995801.64007-CDS-E-fasciculatus_F_contig15755:2223..25351695995801.64007-CDS-E-fasciculatus_F_contig15755:2223..2535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15755 2224..2535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15755.3963.1

>prot_E-fasciculatus_F_contig15755.3963.1 ID=prot_E-fasciculatus_F_contig15755.3963.1|Name=mRNA_E-fasciculatus_F_contig15755.3963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MMARTETTNACPRNARLAEPIPGYLHHTYRLKQTNNGKGGKNNTTTPHYR
EKSHEENKTRNEPKKTLMGRYNGGKCTSSIPPMSDHGVSGTVTWCPRSDD
APT*
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mRNA from alignment at E-fasciculatus_F_contig15755:2214..2594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15755.3963.1 ID=mRNA_E-fasciculatus_F_contig15755.3963.1|Name=mRNA_E-fasciculatus_F_contig15755.3963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15755:2214..2594+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGCACGCTTATGATGGCACGTACGGAGACGACCAATGCGTGTCCGCGCA
ACGCACGCTTGGCTGAACCAATACCCGGATACCTCCACCATACATACAGG
CTCAAACAGACCAATAACGGAAAAGGGGGCAAAAACAACACAACAACACC
ACACTACCGAGAAAAATCACACGAAGAAAACAAGACACGAAACGAACCCA
AAAAAACACTAATGGGTAGATACAACGGGGGAAAATGCACCTCCTCCATT
CCTCCGATGTCCGACCACGGTGTATCGGGGACGGTGACCTGGTGTCCCCG
CAGCGACGATGCCCCCACCTGATTGTGTCAGTGGCATTGTGTCGAGACAT
GTCCACACACAACAGGGATTGTGAAGAAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15755:2214..2594+

>mRNA_E-fasciculatus_F_contig15755.3963.1 ID=mRNA_E-fasciculatus_F_contig15755.3963.1|Name=mRNA_E-fasciculatus_F_contig15755.3963.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15755:2214..2594+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGCACGTACGGAGACGACCAATGCGTGTCCGCGCAACGCACGCTT
GGCTGAACCAATACCCGGATACCTCCACCATACATACAGGCTCAAACAGA
CCAATAACGGAAAAGGGGGCAAAAACAACACAACAACACCACACTACCGA
GAAAAATCACACGAAGAAAACAAGACACGAAACGAACCCAAAAAAACACT
AATGGGTAGATACAACGGGGGAAAATGCACCTCCTCCATTCCTCCGATGT
CCGACCACGGTGTATCGGGGACGGTGACCTGGTGTCCCCGCAGCGACGAT
GCCCCCACCTGAATGATGGCACGTACGGAGACGACCAATGCGTGTCCGCG
CAACGCACGCTTGGCTGAACCAATACCCGGATACCTCCACCATACATACA
GGCTCAAACAGACCAATAACGGAAAAGGGGGCAAAAACAACACAACAACA
CCACACTACCGAGAAAAATCACACGAAGAAAACAAGACACGAAACGAACC
CAAAAAAACACTAATGGGTAGATACAACGGGGGAAAATGCACCTCCTCCA
TTCCTCCGATGTCCGACCACGGTGTATCGGGGACGGTGACCTGGTGTCCC
CGCAGCGACGATGCCCCCACCTGA
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