mRNA_E-fasciculatus_F_contig15743.3959.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15743.3959.1
Unique NamemRNA_E-fasciculatus_F_contig15743.3959.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A6H5KUD2_9PHAE (Aconitate hydratase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD2_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 4.110e-87
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKE+LRADEGAPYDEVIEIDLD LRPHVNGPFTPDLAHPVG EFSAA
Sbjct:  225 KVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKEHLRADEGAPYDEVIEIDLDTLRPHVNGPFTPDLAHPVGAEFSAA 365          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A662Y503_9STRA (Aconitase domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y503_9STRA)

HSP 1 Score: 233 bits (593), Expect = 2.270e-72
Identity = 111/141 (78.72%), Postives = 125/141 (88.65%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGV LTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFGPGV+SISCTGMGTICNMGAEIGATCSTFPY  RM DYL++T+RSGIASAA+SF  NLRADEGA YD++IE++LD L+P +NGPFTPDL H  G +  AA
Sbjct:  209 KVIGVNLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGPGVESISCTGMGTICNMGAEIGATCSTFPYTDRMSDYLKSTKRSGIASAADSFSSNLRADEGAHYDQIIELNLDTLKPMLNGPFTPDLGHVAGADMKAA 349          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: K3W6K0_GLOUD (Aconitate hydratase, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6K0_GLOUD)

HSP 1 Score: 238 bits (606), Expect = 1.470e-71
Identity = 116/141 (82.27%), Postives = 128/141 (90.78%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFGPGV+SISCTGMGTICNMGAEIGATCSTFPY  RM DYL+AT RSGIASAA+SFK NLRADEGA YD++IEI+LD+L+P VNGPFTPDLA+  G +  AA
Sbjct:  233 KVIGVKLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGPGVESISCTGMGTICNMGAEIGATCSTFPYTDRMADYLKATTRSGIASAADSFKANLRADEGAQYDQIIEINLDELKPLVNGPFTPDLANEAGEQLKAA 373          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A2D4BXR5_PYTIN (Aconitate hydratase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXR5_PYTIN)

HSP 1 Score: 236 bits (601), Expect = 6.950e-71
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFG GV+SISCTGMGTICNMGAEIGATCSTFPY  RM DYL AT+RSGIASAAN F+ NLRADEGA YD++IEI+LD+L+P VNGPFTPDLAH  G +   A
Sbjct:  227 KVIGVKLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGEGVESISCTGMGTICNMGAEIGATCSTFPYTERMADYLHATQRSGIASAANDFRHNLRADEGAKYDQIIEINLDELKPLVNGPFTPDLAHEAGADLHQA 367          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A7S0P924_CAFRO (Aconitate hydratase, mitochondrial n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P924_CAFRO)

HSP 1 Score: 236 bits (601), Expect = 7.270e-71
Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPV 402
            +VIGV LTG LSGWTSPKDIILKVA ILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYN RM DYL AT R GIA AA+ F++NLRADEGA YD +IEIDLD L PHVNGPFTPDLAHPV
Sbjct:  231 KVIGVHLTGSLSGWTSPKDIILKVADILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNERMGDYLRATGREGIAKAADGFRDNLRADEGAEYDRIIEIDLDTLVPHVNGPFTPDLAHPV 364          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A024GCK2_9STRA (Aconitate hydratase, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=A0A024GCK2_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.420e-70
Identity = 114/141 (80.85%), Postives = 126/141 (89.36%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPY  RM DYL+ T+RSGIASAA+SF ENL+AD+GA YD++IE+DL +L+P VNGPFTPDLAH  G E   A
Sbjct:  231 KVIGVKLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYTHRMADYLKMTDRSGIASAADSFAENLQADKGAHYDQIIEVDLTQLKPLVNGPFTPDLAHHAGKELKEA 371          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A8K1CDT1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDT1_PYTOL)

HSP 1 Score: 234 bits (597), Expect = 2.720e-70
Identity = 114/141 (80.85%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFGPGV+SISCTGM TICNMGAEIGATCSTFPY  RM DYL AT+RSGIASAAN F  NLRADEGA YD++IEI+LD L+P VNGPFTPDLAH  G +   A
Sbjct:  229 KVIGVKLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGPGVESISCTGMATICNMGAEIGATCSTFPYTERMADYLHATQRSGIASAANDFSANLRADEGAHYDQIIEINLDNLKPLVNGPFTPDLAHEAGEDLRQA 369          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A2T7Q0J8_POMCA (Aconitate hydratase, mitochondrial n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7Q0J8_POMCA)

HSP 1 Score: 232 bits (591), Expect = 1.180e-69
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPV 402
            +VIGVKLTGKLSGWTSPKD+ILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGAT S FP+N RMQDYL+AT R+ IAS A+S+K+ L AD  A YDEVIEIDLDKL PHVNGPFTPDLAHP+
Sbjct:  195 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATTSIFPFNHRMQDYLKATNRADIASLASSYKDLLSADANAKYDEVIEIDLDKLEPHVNGPFTPDLAHPI 328          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: A0A836CC46_9STRA (Aconitate hydratase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC46_9STRA)

HSP 1 Score: 231 bits (588), Expect = 5.850e-69
Identity = 109/141 (77.30%), Postives = 125/141 (88.65%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGVKLTG+LSGWTSPKD+ILKVAGILTVKGGTGAIVEYFGPG+DSISCTGM TI NMGAEIGATC+TFP+N+RM  YL AT R G+A+AA  F  NLRADEGAPYDE++EI+L +L+PH+NGPFTPDLAH  G E +AA
Sbjct:  234 KVIGVKLTGELSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGLDSISCTGMATIANMGAEIGATCTTFPFNARMATYLAATTRGGLAAAAEGFAANLRADEGAPYDELVEINLSELKPHLNGPFTPDLAHTAGAEMAAA 374          
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Match: H3G9W6_PHYRM (Aconitate hydratase, mitochondrial n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9W6_PHYRM)

HSP 1 Score: 230 bits (587), Expect = 7.720e-69
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    1 QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISCTGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLRADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA 423
            +VIGV LTGKLSGWTSPKD+ILKVA ILTVKGGTGAIVEYFGPGV+SISCTGMGTICNMGAEIGATCSTFPY  RM DYL +T+RSGIASAA SF+ NLRADEGA YD++I I+LD+L+P VNGPFTPDL H  G +   A
Sbjct:  230 KVIGVNLTGKLSGWTSPKDVILKVADILTVKGGTGAIVEYFGPGVESISCTGMGTICNMGAEIGATCSTFPYTERMGDYLRSTKRSGIASAAESFQANLRADEGAQYDQIININLDELKPMVNGPFTPDLGHVAGADMKEA 370          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15743.3959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUD2_9PHAE4.110e-8797.16Aconitate hydratase, mitochondrial n=2 Tax=Ectocar... [more]
A0A662Y503_9STRA2.270e-7278.72Aconitase domain-containing protein (Fragment) n=2... [more]
K3W6K0_GLOUD1.470e-7182.27Aconitate hydratase, mitochondrial n=2 Tax=Pythiac... [more]
A0A2D4BXR5_PYTIN6.950e-7180.85Aconitate hydratase, mitochondrial n=1 Tax=Pythium... [more]
A0A7S0P924_CAFRO7.270e-7185.82Aconitate hydratase, mitochondrial n=3 Tax=Cafeter... [more]
A0A024GCK2_9STRA1.420e-7080.85Aconitate hydratase, mitochondrial n=2 Tax=Albugo ... [more]
A0A8K1CDT1_PYTOL2.720e-7080.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2T7Q0J8_POMCA1.180e-6984.33Aconitate hydratase, mitochondrial n=2 Tax=Pomacea... [more]
A0A836CC46_9STRA5.850e-6977.30Aconitate hydratase, mitochondrial n=1 Tax=Tribone... [more]
H3G9W6_PHYRM7.720e-6978.72Aconitate hydratase, mitochondrial n=1 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15743contigE-fasciculatus_F_contig15743:109..1194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue8.4e-75
Seed eggNOG ortholog2880.D7FQN5
Preferred nameACO2
KEGG rclassRC00497,RC00498,RC00618
KEGG koko:K01681
KEGG ReactionR01324,R01325,R01900
KEGG Pathwayko00020,ko00630,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00020,map00630,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00009,M00010,M00012,M00173,M00740
GOsGO:0000002,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0003994,GO:0005488,GO:0005506,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006520,GO:0006536,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0008198,GO:0009060,GO:0009064,GO:0009295,GO:0009605,GO:0009607,GO:0009987,GO:0015980,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031012,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0032502,GO:0035821,GO:0035900,GO:0042645,GO:0043167,GO:0043169,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044003,GO:0044237,GO:0044238,GO:0044281,GO:0044403,GO:0044416,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050896,GO:0051536,GO:0051538,GO:0051539,GO:0051540,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055114,GO:0061008,GO:0062039,GO:0062040,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0075136,GO:0080134,GO:0097159,GO:1901363,GO:1901564,GO:1901605
EggNOG free text desc.homoaconitate hydratase activity
EggNOG OGsCOG1048@1,KOG0453@2759
EC4.2.1.3
COG Functional cat.C
BiGG ReactioniMM904.YLR304C,iND750.YLR304C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928044.0172474-CDS-E-fasciculatus_F_contig15743:108..3511622928044.0172474-CDS-E-fasciculatus_F_contig15743:108..351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15743 109..351 +
1695995801.3145764-CDS-E-fasciculatus_F_contig15743:108..3511695995801.3145764-CDS-E-fasciculatus_F_contig15743:108..351Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15743 109..351 +
1622928044.0288742-CDS-E-fasciculatus_F_contig15743:1014..11941622928044.0288742-CDS-E-fasciculatus_F_contig15743:1014..1194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15743 1015..1194 +
1695995801.3285708-CDS-E-fasciculatus_F_contig15743:1014..11941695995801.3285708-CDS-E-fasciculatus_F_contig15743:1014..1194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15743 1015..1194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15743.3959.1prot_E-fasciculatus_F_contig15743.3959.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15743 109..1194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15743.3959.1

>prot_E-fasciculatus_F_contig15743.3959.1 ID=prot_E-fasciculatus_F_contig15743.3959.1|Name=mRNA_E-fasciculatus_F_contig15743.3959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
QVIGVKLTGKLSGWTSPKDIILKVAGILTVKGGTGAIVEYFGPGVDSISC
TGMGTICNMGAEIGATCSTFPYNSRMQDYLEATERSGIASAANSFKENLR
ADEGAPYDEVIEIDLDKLRPHVNGPFTPDLAHPVGTEFSAA
back to top

mRNA from alignment at E-fasciculatus_F_contig15743:109..1194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15743.3959.1 ID=mRNA_E-fasciculatus_F_contig15743.3959.1|Name=mRNA_E-fasciculatus_F_contig15743.3959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15743:109..1194+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGATCGGTGTGAAGCTGACGGGCAAGCTCTCCGGCTGGACCTCGCC CAAGGACATCATCCTCAAGGTGGCCGGCATCCTCACCGTGAAGGGCGGGA CCGGCGCCATCGTCGAGTACTTCGGCCCCGGGGTGGACTCGATCTCTTGC ACCGGCATGGGCACCATCTGCAACATGGGGGCGGAGATCGGGGCCACGTG CTCCACCTTCCCGTACAACTCTCGCATGCAGGACTACCTCGAGGTGAGGG AGGAGGGACCAGGGGTCGAAGGGGGTGGGTTCTCGCGTGCTTGCCGTTGA ATAAGGAACAGTCTATATACTGCTTGCGGGCGTGTCTGCACGATGAATTT TCTTGATGCTTTGTTTTGATAAAACAATGTGGTGTGTGCTGATGAACATT TAAAATCATCGTGGTTTTGTCGCACTTCTTTTTTCGGCGGGGAGGCTCGT TCGAAGCAGCCTCAAACAAAAGGGCGAAAACAACCGAACACGCAGCGCGT AGAGCACGCACTTAATTTCCTGCTTCTCAGAACGAAACTCGAGGTCATCG CAAACGTAATCTGTATCAAAGTACACGCACACATGGCACCCGGCTCACCG TCTCTCCTCTCCGAACATGCACGCTCTGCACTTCGGCACAAACGCCTCTC TATACTACTATTATATTTGTCTTAGAGTAACCACCCGAAACGTCTCTCTG CAAATATTGCTATATGTAACGACCTCCCCACACGCCTCTCCTCAAATATT TTGCTATAACGACGACCCAATCGTCCCTCTAGAAACACTGCTGTGCTAAA CCTCTAGAAACACTGCTGTGCTAAACCTCTAGAAACACTGCTGTGCTAAA CCACTCTCCTCTTTGTGGTTATTTGCCATGAATGTGATGTATAACCACCC CAACAGGCGACGGAGCGGTCGGGGATCGCGTCGGCTGCCAACTCGTTCAA GGAGAACCTCCGTGCCGACGAGGGGGCCCCGTACGACGAGGTGATCGAGA TCGACCTCGACAAGCTGCGCCCCCACGTCAACGGGCCCTTCACGCCCGAC CTCGCGCACCCCGTCGGGACCGAGTTCTCGGCTGCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15743:109..1194+

>mRNA_E-fasciculatus_F_contig15743.3959.1 ID=mRNA_E-fasciculatus_F_contig15743.3959.1|Name=mRNA_E-fasciculatus_F_contig15743.3959.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15743:109..1194+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGATCGGTGTGAAGCTGACGGGCAAGCTCTCCGGCTGGACCTCGCC
CAAGGACATCATCCTCAAGGTGGCCGGCATCCTCACCGTGAAGGGCGGGA
CCGGCGCCATCGTCGAGTACTTCGGCCCCGGGGTGGACTCGATCTCTTGC
ACCGGCATGGGCACCATCTGCAACATGGGGGCGGAGATCGGGGCCACGTG
CTCCACCTTCCCGTACAACTCTCGCATGCAGGACTACCTCGAGCAGGTGA
TCGGTGTGAAGCTGACGGGCAAGCTCTCCGGCTGGACCTCGCCCAAGGAC
ATCATCCTCAAGGTGGCCGGCATCCTCACCGTGAAGGGCGGGACCGGCGC
CATCGTCGAGTACTTCGGCCCCGGGGTGGACTCGATCTCTTGCACCGGCA
TGGGCACCATCTGCAACATGGGGGCGGAGATCGGGGCCACGTGCTCCACC
TTCCCGTACAACTCTCGCATGCAGGACTACCTCGAGGCGACGGAGCGGTC
GGGGATCGCGTCGGCTGCCAACTCGTTCAAGGAGAACCTCCGTGCCGACG
AGGGGGCCCCGTACGACGAGGTGATCGAGATCGACCTCGACAAGCTGCGC
CCCCACGTCAACGGGCCCTTCACGCCCGACCTCGCGCACCCCGTCGGGAC
CGAGTTCTCGGCTGCCGCGACGGAGCGGTCGGGGATCGCGTCGGCTGCCA
ACTCGTTCAAGGAGAACCTCCGTGCCGACGAGGGGGCCCCGTACGACGAG
GTGATCGAGATCGACCTCGACAAGCTGCGCCCCCACGTCAACGGGCCCTT
CACGCCCGACCTCGCGCACCCCGTCGGGACCGAGTTCTCGGCTGCC
back to top