mRNA_E-fasciculatus_F_contig15738.3957.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15738.3957.1
Unique NamemRNA_E-fasciculatus_F_contig15738.3957.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15738.3957.1 vs. uniprot
Match: D8LUC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC6_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.800e-53
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   19 GSCSTYASKSLKGGDDQARKNELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKEVADIRTRRDNYGGEQQGSPTSPHRRALKELPQKMVPTKPRARGPTLACRRPPR 366
            G CS YASKSL G DDQARK+ELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKEVADI TRR+N+G EQ+GS  SPHRRALK++PQKM PTKPRARGPT +CRRPPR
Sbjct:  182 GGCSKYASKSLNGSDDQARKHELLRKREARVLAHALKVGQTRRQLRPLPASRGQHLRAVVRKEVADIWTRRENHG-EQRGSQASPHRRALKKVPQKMAPTKPRARGPTPSCRRPPR 296
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15738.3957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC6_ECTSI1.800e-5385.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15738contigE-fasciculatus_F_contig15738:139..1976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004470.1
Exons3
Model size901
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15738.3957.1prot_E-fasciculatus_F_contig15738.3957.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15738 671..1976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.887176-UTR-E-fasciculatus_F_contig15738:138..6701622928043.887176-UTR-E-fasciculatus_F_contig15738:138..670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15738 139..670 -
1695995801.2566395-UTR-E-fasciculatus_F_contig15738:138..6701695995801.2566395-UTR-E-fasciculatus_F_contig15738:138..670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15738 139..670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.9053106-CDS-E-fasciculatus_F_contig15738:670..8141622928043.9053106-CDS-E-fasciculatus_F_contig15738:670..814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 671..814 -
1695995801.2688653-CDS-E-fasciculatus_F_contig15738:670..8141695995801.2688653-CDS-E-fasciculatus_F_contig15738:670..814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 671..814 -
1622928043.9239259-CDS-E-fasciculatus_F_contig15738:1163..12891622928043.9239259-CDS-E-fasciculatus_F_contig15738:1163..1289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 1164..1289 -
1695995801.2798464-CDS-E-fasciculatus_F_contig15738:1163..12891695995801.2798464-CDS-E-fasciculatus_F_contig15738:1163..1289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 1164..1289 -
1622928043.939186-CDS-E-fasciculatus_F_contig15738:1877..19761622928043.939186-CDS-E-fasciculatus_F_contig15738:1877..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 1878..1976 -
1695995801.2912998-CDS-E-fasciculatus_F_contig15738:1877..19761695995801.2912998-CDS-E-fasciculatus_F_contig15738:1877..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15738 1878..1976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15738.3957.1

>prot_E-fasciculatus_F_contig15738.3957.1 ID=prot_E-fasciculatus_F_contig15738.3957.1|Name=mRNA_E-fasciculatus_F_contig15738.3957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
HWSEGGGSCSTYASKSLKGGDDQARKNELLRKREARVLAHALKVGQTRRQ
LRPLPASRGQHLRAVVRKEVADIRTRRDNYGGEQQGSPTSPHRRALKELP
QKMVPTKPRARGPTLACRRPPR*
back to top

mRNA from alignment at E-fasciculatus_F_contig15738:139..1976-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15738.3957.1 ID=mRNA_E-fasciculatus_F_contig15738.3957.1|Name=mRNA_E-fasciculatus_F_contig15738.3957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1838bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15738:139..1976- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATTGGTCCGAGGGGGGGGGGAGTTGTAGCACCTACGCCTCCAAGAGCTT
GAAAGGGGGGGATGACCAGGCGAGAAAAAATGAGCTGCTGCGCAAGAGGG
TGAGTGTGGTGTTGTACAGTTGTTCACGGCGGTGAGTATGTTAGTGTTGC
CCTCTCATTGAAGCGTGCTGGACTCTTAAAAGCGTGCTGGAAGGAACGGA
GCAAAATAATTAATTATATGGGGGGCGTATCTTTTGCCCCCTGCTTGGGG
GTACGTAGTTCTAATCCCATGTACAGGAAGCAGCATGTTCTCCACAAACG
CAAAAGAACGAGGGGTATGTGAGACCGTCACGTGCATATGCATGGCTGGG
GCGTCGTTGTCAGGTGACTACTAAATACTGCTTTCGCGAGGAGAAGTTTT
CAATGAGAAAGGCAAGTTGCTGCTGTGGTTGATTCAGACATTGATCGTTA
GTATACCTCCAAGCGCAAGTACCGGATGACAGGTCAGGTCGCATTTGTTG
TTCGCGTTCACTACACATGTTTTTCTGCATTTTGGACGTTCTCTTTCGTG
ATACCGAGTGACGTTGTAAAATGGACTCACTCTCGTTGGCCTTGGCTTGA
GTCACTTATTCGTTTTCCCAACCAAAAGAGTGTTCACTGGGAAGGGGCCT
CCTTTTTGTGTGTTGTCGTGTTGATGACAAATTGTAGGAGGCACGTGTGT
TGGCCCACGCCTTGAAGGTTGGACAGACTAGGAGACAACTGAGACCTCTC
CCTGCCAGCCGGGGGCAGCATCTGCGCGCCGTGGTTCGAAAGGAAGTGGC
GGACATCAGGACGGTGAGACAGACCAAGTCGAAGGTATTCGCGGCCTCTT
TTTTTATCATCCGAAAAACCACAGACGAGTTGATGTCGTGTGGCCGTTCA
ACAGCCCAGGGGCGTCGAGGCTTGCGAGGACACTACCACAAGACACGAAG
GCTGCTGTGCTCCCGGTACCCCCCCCTCGTCCCCTGGTTGTTTTTGTAAG
GAGAACAAAGCCAATGCCACCCTTTGCTCAGGTCGTGACCTACCGGTATC
CCACCCGTCCACACCTCCTGGAGAAGAAGAATTCTTGCACGCGGAGAAGA
AAAATTCTTGCACACGATATCATGTTTTTTTCGATGCCCGCCTGCTCTCG
TCAACAAAGCAGCGCCGAGATAACTACGGGGGGGAGCAACAGGGTTCGCC
GACATCGCCGCATCGCAGGGCATTGAAGGAGCTGCCTCAAAAGATGGTAC
CGACGAAACCAAGAGCTCGGGGCCCAACTCTGGCCTGTCGGCGCCCACCA
AGATGACACTAATTGCACCTCTCTCTCTCTGTTCGTGTTTTTACTACTCT
CAACGTGAGGTTCGTGATCCTTCTCTCGCGTGACTTTGGGCAACCTTTTG
GGCACGAAAATTTGTTGCCTCCGGCTTTGTTTGGAGGATGATTTACCCGG
CCTTGAGGCTCACTCCGACGCTGGTTTGTGGTGTTAGCAAGAATCACCCT
CCTCGTCTGTAGAGAGAGGGGACGCGCTGGCACAACAATTGAACAAACCC
CTGTGCATTTGATCCGTGATTTTGTTGTATTACGGGCTGACAAGTTAGTT
GCAAACATTTAGCAGACATCTTCGTTCATATGGTGGCATTCTTATCTCTC
GGGTTAGCTATTACTTCGTTTTAGTCAGTCCATGCTGTGAGCCTTGGATA
TAAACGCGCAAGCGTAGTCGTATTGTATAGGCAGTCTGTACCAGCGGTTA
CCACCCCGTGGGAGTACATCGTTCGTGCGTGTATATTAGTCAACTTTGTG
AGATTGTCATATTTTCCTATATTGTTGTGATCAGCAGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15738:139..1976-

>mRNA_E-fasciculatus_F_contig15738.3957.1 ID=mRNA_E-fasciculatus_F_contig15738.3957.1|Name=mRNA_E-fasciculatus_F_contig15738.3957.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15738:139..1976- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATTGGTCCGAGGGGGGGGGGAGTTGTAGCACCTACGCCTCCAAGAGCTT
GAAAGGGGGGGATGACCAGGCGAGAAAAAATGAGCTGCTGCGCAAGAGGC
ATTGGTCCGAGGGGGGGGGGAGTTGTAGCACCTACGCCTCCAAGAGCTTG
AAAGGGGGGGATGACCAGGCGAGAAAAAATGAGCTGCTGCGCAAGAGGGA
GGCACGTGTGTTGGCCCACGCCTTGAAGGTTGGACAGACTAGGAGACAAC
TGAGACCTCTCCCTGCCAGCCGGGGGCAGCATCTGCGCGCCGTGGTTCGA
AAGGAAGTGGCGGACATCAGGACGGAGGCACGTGTGTTGGCCCACGCCTT
GAAGGTTGGACAGACTAGGAGACAACTGAGACCTCTCCCTGCCAGCCGGG
GGCAGCATCTGCGCGCCGTGGTTCGAAAGGAAGTGGCGGACATCAGGACG
CGCCGAGATAACTACGGGGGGGAGCAACAGGGTTCGCCGACATCGCCGCA
TCGCAGGGCATTGAAGGAGCTGCCTCAAAAGATGGTACCGACGAAACCAA
GAGCTCGGGGCCCAACTCTGGCCTGTCGGCGCCCACCAAGATGACGCCGA
GATAACTACGGGGGGGAGCAACAGGGTTCGCCGACATCGCCGCATCGCAG
GGCATTGAAGGAGCTGCCTCAAAAGATGGTACCGACGAAACCAAGAGCTC
GGGGCCCAACTCTGGCCTGTCGGCGCCCACCAAGATGA
back to top