mRNA_E-fasciculatus_F_contig15721.3954.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15721.3954.1
Unique NamemRNA_E-fasciculatus_F_contig15721.3954.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: D7FVG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG2_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.530e-31
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGILSPISQAMCLT 210
            MAQTDR ALLALYHATGGPAW RNY WDT SPISQW+GVTVI DRVVKL+L  NN+QG + P S A+C T
Sbjct:    1 MAQTDRAALLALYHATGGPAWTRNYNWDTDSPISQWYGVTVIGDRVVKLNLMCNNVQGSVGPNSLAVCFT 70          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A0S1SH81_9FLAO (Uncharacterized protein n=2 Tax=Sediminicola sp. YIK13 TaxID=1453352 RepID=A0A0S1SH81_9FLAO)

HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    7 QTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            Q DR AL+ALY++T G  W +   WD   P+S+W+GVTV++D+VV+++L  NNLQG+L
Sbjct:   13 QDDREALVALYNSTNGDEWTKT--WDLNQPVSEWYGVTVVNDKVVEINLFRNNLQGVL 68          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A0P0CFI0_9FLAO (Two component regulator three Y domain protein n=1 Tax=Algibacter alginicilyticus TaxID=1736674 RepID=A0A0P0CFI0_9FLAO)

HSP 1 Score: 68.6 bits (166), Expect = 3.770e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   10 TDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            +D+ ALLALY+AT G AW  N  W+  +P+  W+GVT+ +D+VV+L+LP NNL+G+L
Sbjct:   24 SDKEALLALYNATNGAAW--NSSWNIDNPMDSWYGVTIENDKVVELNLPFNNLEGVL 78          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A1B7YYA3_9FLAO (Uncharacterized protein n=1 Tax=Maribacter hydrothermalis TaxID=1836467 RepID=A0A1B7YYA3_9FLAO)

HSP 1 Score: 68.6 bits (166), Expect = 4.340e-12
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGILSP 186
            +++T++ AL+ LY A  G  W +  KWD  SP+SQW+GVT++DD+VV+++L  NNL G +SP
Sbjct:   22 VSKTEKKALIDLYTAANGKHWVK--KWDLKSPVSQWYGVTIVDDKVVEVNLFHNNLMGSISP 81          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A6L8E3R0_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8E3R0_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 6.880e-12
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 AQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDL---PGNNLQGILSP 186
            A T+R AL+A YHA GGP W     W ++ P+  W+GV   DDRV KLDL    GNNL+G ++P
Sbjct:   44 ATTERDALVAQYHAAGGPDWTDTTNWLSSEPLGTWYGVEAEDDRVTKLDLCGPDGNNLRGTIAP 107          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A6L7Y9R5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7Y9R5_9CHLR)

HSP 1 Score: 65.9 bits (159), Expect = 9.710e-12
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   13 DRVALLALYHATGGPAWHRNYKWDTTSPISQWHGV-TVIDDRVVKLDLPGNNLQGILSP 186
            DR AL+A YHATGGP W R   W +  P+ +WHGV T  D RV  L LPG  L+G + P
Sbjct:   54 DREALVAFYHATGGPGWARATNWLSGRPVGEWHGVATDRDGRVTHLTLPGEGLRGEIPP 112          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A3N9NUE1_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N9NUE1_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 9.880e-12
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   13 DRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            D +AL+ALY++T G +W  N  W  T P+S WHGVT+ +DRV ++DL GNNL G L
Sbjct:  222 DSLALVALYNSTNGDSWTNNTNW-LTGPVSTWHGVTIEEDRVYRIDLHGNNLVGTL 276          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A352FEI0_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 MAQTDRVALLALYHATGGPAWHRNYKWD-TTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            ++Q DR AL+ALY+ATGGPAW  +  W  T + +  W+GVTV   +V K+ L  NNL G L
Sbjct:   34 VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSGKVTKVKLTANNLTGSL 94          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A2G2HLE0_9FLAO (Two component regulator three Y domain protein n=1 Tax=Lutibacter sp. TaxID=1925666 RepID=A0A2G2HLE0_9FLAO)

HSP 1 Score: 66.2 bits (160), Expect = 2.860e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            ++++++  L++LY++T G +W  N KWD T     WHGVT+I+D+VVKL+L  NNL G L
Sbjct:   22 ISESEKEVLISLYNSTNGESW--NQKWDLTQSAENWHGVTIINDQVVKLNLSSNNLSGNL 79          
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Match: A0A2U3AXR6_9FLAO (Two component regulator three Y domain protein n=1 Tax=Flavobacteriaceae bacterium LYZ1037 TaxID=2200952 RepID=A0A2U3AXR6_9FLAO)

HSP 1 Score: 65.5 bits (158), Expect = 5.170e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
            + Q ++ AL+ALY++T G AW  N  W+   PI  W+GVTV++D+V++++L  NNLQG L
Sbjct:   21 VTQNEKDALIALYNSTNGDAW--NNSWNLNEPIENWYGVTVVNDKVIEINLHFNNLQGTL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15721.3954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG2_ECTSI2.530e-3175.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0S1SH81_9FLAO2.060e-1251.72Uncharacterized protein n=2 Tax=Sediminicola sp. Y... [more]
A0A0P0CFI0_9FLAO3.770e-1252.63Two component regulator three Y domain protein n=1... [more]
A0A1B7YYA3_9FLAO4.340e-1248.39Uncharacterized protein n=1 Tax=Maribacter hydroth... [more]
A0A6L8E3R0_9BACT6.880e-1250.00Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A6L7Y9R5_9CHLR9.710e-1252.54Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A3N9NUE1_9BACT9.880e-1253.57T9SS C-terminal target domain-containing protein n... [more]
A0A352FEI0_9BACT1.190e-1149.18Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
A0A2G2HLE0_9FLAO2.860e-1146.67Two component regulator three Y domain protein n=1... [more]
A0A2U3AXR6_9FLAO5.170e-1146.67Two component regulator three Y domain protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15721contigE-fasciculatus_F_contig15721:2122..2331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog2880.D8LK68
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC6.3.1.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_000970.1
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.665432-CDS-E-fasciculatus_F_contig15721:2121..23311622928043.665432-CDS-E-fasciculatus_F_contig15721:2121..2331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15721 2122..2331 -
1695995801.1775184-CDS-E-fasciculatus_F_contig15721:2121..23311695995801.1775184-CDS-E-fasciculatus_F_contig15721:2121..2331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15721 2122..2331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15721.3954.1prot_E-fasciculatus_F_contig15721.3954.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15721 2122..2331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15721.3954.1

>prot_E-fasciculatus_F_contig15721.3954.1 ID=prot_E-fasciculatus_F_contig15721.3954.1|Name=mRNA_E-fasciculatus_F_contig15721.3954.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=70bp
MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLD
LPGNNLQGILSPISQAMCLT
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mRNA from alignment at E-fasciculatus_F_contig15721:2122..2331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15721.3954.1 ID=mRNA_E-fasciculatus_F_contig15721.3954.1|Name=mRNA_E-fasciculatus_F_contig15721.3954.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=210bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15721:2122..2331- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCAGACGGACCGTGTCGCACTGCTTGCCCTCTACCACGCGACCGG CGGGCCCGCGTGGCATCGCAACTACAAATGGGACACGACTTCCCCCATCT CGCAATGGCACGGGGTCACAGTCATCGACGACCGCGTCGTGAAGCTAGAT CTGCCGGGCAACAATCTCCAAGGTATCTTGAGCCCAATCTCTCAGGCGAT GTGCTTGACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15721:2122..2331-

>mRNA_E-fasciculatus_F_contig15721.3954.1 ID=mRNA_E-fasciculatus_F_contig15721.3954.1|Name=mRNA_E-fasciculatus_F_contig15721.3954.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15721:2122..2331- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCAGACGGACCGTGTCGCACTGCTTGCCCTCTACCACGCGACCGG
CGGGCCCGCGTGGCATCGCAACTACAAATGGGACACGACTTCCCCCATCT
CGCAATGGCACGGGGTCACAGTCATCGACGACCGCGTCGTGAAGCTAGAT
CTGCCGGGCAACAATCTCCAAGGTATCTTGAGCCCAATCTCTCAGGCGAT
GTGCTTGACCATGGCTCAGACGGACCGTGTCGCACTGCTTGCCCTCTACC
ACGCGACCGGCGGGCCCGCGTGGCATCGCAACTACAAATGGGACACGACT
TCCCCCATCTCGCAATGGCACGGGGTCACAGTCATCGACGACCGCGTCGT
GAAGCTAGATCTGCCGGGCAACAATCTCCAAGGTATCTTGAGCCCAATCT
CTCAGGCGATGTGCTTGACC
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