mRNA_E-fasciculatus_F_contig15720.3952.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15720.3952.1
Unique NamemRNA_E-fasciculatus_F_contig15720.3952.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15720.3952.1 vs. uniprot
Match: D7FLR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR9_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.660e-46
Identity = 130/175 (74.29%), Postives = 133/175 (76.00%), Query Frame = 1 
Query:    1 LLLKAGIARVAGTSRSSSLSPAAGAAGAALDQRRNTHGGGG------GTRSKALPQPRPLQLWSPWRAAMAEGDDSEPDAAGEELPAAKPLDXXXXXXXXXXXXXXXXXXXXNGLWQFLARGVAAFAVPDTNPEVLTEEAAAAAXXXXXAAMAAALGAGPVVVGGEPVDDVDALS 507
            LLL+AGIARVAGT+RSSSLSPAAGAA   LDQRRNT G          TRSKALPQPRPLQLWSPWRAAM EGDD+EP  A  ELPAAK L       XXXXXXXXXXXXXXNGLWQFLARGVAA AVPDTNPEVLTE A    XXXXX       GAGPVVVGGEPV D DALS
Sbjct:  248 LLLQAGIARVAGTARSSSLSPAAGAA---LDQRRNTQGXXXXXXXXXNTRSKALPQPRPLQLWSPWRAAMTEGDDNEPAGAAGELPAAKAL---VDDTXXXXXXXXXXXXXXNGLWQFLARGVAALAVPDTNPEVLTEAAXXXXXXXXXXXXXXXXGAGPVVVGGEPVGDGDALS 416
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BLAST of mRNA_E-fasciculatus_F_contig15720.3952.1 vs. uniprot
Match: A0A6H5L4Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.440e-41
Identity = 95/137 (69.34%), Postives = 98/137 (71.53%), Query Frame = 1 
Query:    1 LLLKAGIARVAGTSRSSSLSPAAGAAGAALDQRRNTHGGGG-----GTRSKALPQPRPLQLWSPWRAAMAEGDDSEPDAAGEELPAAKPLDXXXXXXXXXXXXXXXXXXXXNGLWQFLARGVAAFAVPDTNPEVLTE 396
            LLL+AGIARVAGT+RSSSLSPAAGAA   LDQRRNTHGG         RSKALPQPRPLQLWSPWRAAM EGDDSEP  A  +LPAAK LD                    NGLWQFLARGVAA AVPDTNPEVLTE
Sbjct:  241 LLLQAGIARVAGTARSSSLSPAAGAA---LDQRRNTHGGXXXXXXXNIRSKALPQPRPLQLWSPWRAAMTEGDDSEPGGAAGKLPAAKALDDDTPSLEEEAGSGGGG----NGLWQFLARGVAALAVPDTNPEVLTE 370
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15720.3952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLR9_ECTSI2.660e-4674.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Z9_9PHAE3.440e-4169.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15720contigE-fasciculatus_F_contig15720:68..1095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.5507836-CDS-E-fasciculatus_F_contig15720:67..3751622928043.5507836-CDS-E-fasciculatus_F_contig15720:67..375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 68..375 -
1695995801.1350005-CDS-E-fasciculatus_F_contig15720:67..3751695995801.1350005-CDS-E-fasciculatus_F_contig15720:67..375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 68..375 -
1622928043.5682976-CDS-E-fasciculatus_F_contig15720:869..10951622928043.5682976-CDS-E-fasciculatus_F_contig15720:869..1095Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 870..1095 -
1695995801.1432142-CDS-E-fasciculatus_F_contig15720:869..10951695995801.1432142-CDS-E-fasciculatus_F_contig15720:869..1095Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 870..1095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15720.3952.1prot_E-fasciculatus_F_contig15720.3952.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15720 68..1095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15720.3952.1

>prot_E-fasciculatus_F_contig15720.3952.1 ID=prot_E-fasciculatus_F_contig15720.3952.1|Name=mRNA_E-fasciculatus_F_contig15720.3952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=178bp
LLLKAGIARVAGTSRSSSLSPAAGAAGAALDQRRNTHGGGGGTRSKALPQ
PRPLQLWSPWRAAMAEGDDSEPDAAGEELPAAKPLDDDSPPPPQEEPAAD
SGGGGGNGLWQFLARGVAAFAVPDTNPEVLTEEAAAAAEEKARAAMAAAL
GAGPVVVGGEPVDDVDALSSASSLLRME
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mRNA from alignment at E-fasciculatus_F_contig15720:68..1095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15720.3952.1 ID=mRNA_E-fasciculatus_F_contig15720.3952.1|Name=mRNA_E-fasciculatus_F_contig15720.3952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1028bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15720:68..1095- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCTTCTCAAGGCGGGCATCGCGCGGGTGGCGGGCACGTCTCGCTCCTC
GTCGCTTTCGCCCGCTGCTGGTGCCGCTGGTGCTGCATTGGACCAGAGGA
GGAACACGCACGGCGGCGGCGGAGGCACTCGCAGCAAGGCGCTGCCGCAG
CCGCGTCCTCTGCAGCTGTGGTCGCCGTGGCGGGCGGCAATGGCTGAGGG
CGACGACAGCGAACCTGACGCAGCAGGTGTGATTCGTATCTTTGTCCTAG
CGTAGCGACCAACCCCACACGCATATGTTTACCCGAATATATTTTCTTGC
ATATTTGTTTGCCTCGTGCGTATGTTCTCTTTGACGCGAAAGAGACAAAA
ACAACGACAAGGGCAACGACAACGATAGTGATAAACAACGGTAGTGATAA
AGTAATGTAAGAACAAACAGAGCAATAACAGGATCGCCGTTTAGAGCAGA
GCCAAAGGTTTATGGTTGAGGTCGCCTTCACTCCAACGTAGGCATGTAGT
AGTCGGACTGTTGGAGGAAAGGTCAGGTAACCTTGGTTCATTGCTATATT
TCCGAATGCCGGTACATTCCGCCAAATGGGAAAGCAAGCCAAAACCTACT
CTACGATGATGAACCGATCCAGGCACACTCGAAGGTTGCTCGTCACCCAC
CCCACAACTCTCCCGCGACTTACTCCACCCATCTTCCCTCTCCCCGACAA
CCGATTTTGTACCCTCCCAGGCGAAGAACTCCCGGCCGCGAAACCTCTCG
ACGACGACTCTCCACCCCCACCCCAGGAGGAGCCAGCAGCAGACTCAGGC
GGCGGTGGCGGGAACGGGCTGTGGCAGTTCTTGGCCAGAGGCGTGGCGGC
GTTCGCGGTGCCCGACACCAACCCCGAGGTGCTTACAGAGGAGGCGGCGG
CCGCGGCCGAGGAAAAGGCGAGAGCGGCGATGGCGGCGGCCCTCGGTGCC
GGGCCTGTAGTGGTGGGCGGCGAGCCTGTGGATGACGTAGACGCCCTGTC
TTCGGCGTCCTCGCTGCTGCGCATGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15720:68..1095-

>mRNA_E-fasciculatus_F_contig15720.3952.1 ID=mRNA_E-fasciculatus_F_contig15720.3952.1|Name=mRNA_E-fasciculatus_F_contig15720.3952.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15720:68..1095- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCTTCTCAAGGCGGGCATCGCGCGGGTGGCGGGCACGTCTCGCTCCTC
GTCGCTTTCGCCCGCTGCTGGTGCCGCTGGTGCTGCATTGGACCAGAGGA
GGAACACGCACGGCGGCGGCGGAGGCACTCGCAGCAAGGCGCTGCCGCAG
CCGCGTCCTCTGCAGCTGTGGTCGCCGTGGCGGGCGGCAATGGCTGAGGG
CGACGACAGCGAACCTGACGCAGCAGTTGCTTCTCAAGGCGGGCATCGCG
CGGGTGGCGGGCACGTCTCGCTCCTCGTCGCTTTCGCCCGCTGCTGGTGC
CGCTGGTGCTGCATTGGACCAGAGGAGGAACACGCACGGCGGCGGCGGAG
GCACTCGCAGCAAGGCGCTGCCGCAGCCGCGTCCTCTGCAGCTGTGGTCG
CCGTGGCGGGCGGCAATGGCTGAGGGCGACGACAGCGAACCTGACGCAGC
AGGCGAAGAACTCCCGGCCGCGAAACCTCTCGACGACGACTCTCCACCCC
CACCCCAGGAGGAGCCAGCAGCAGACTCAGGCGGCGGTGGCGGGAACGGG
CTGTGGCAGTTCTTGGCCAGAGGCGTGGCGGCGTTCGCGGTGCCCGACAC
CAACCCCGAGGTGCTTACAGAGGAGGCGGCGGCCGCGGCCGAGGAAAAGG
CGAGAGCGGCGATGGCGGCGGCCCTCGGTGCCGGGCCTGTAGTGGTGGGC
GGCGAGCCTGTGGATGACGTAGACGCCCTGTCTTCGGCGTCCTCGCTGCT
GCGCATGGAGGCGAAGAACTCCCGGCCGCGAAACCTCTCGACGACGACTC
TCCACCCCCACCCCAGGAGGAGCCAGCAGCAGACTCAGGCGGCGGTGGCG
GGAACGGGCTGTGGCAGTTCTTGGCCAGAGGCGTGGCGGCGTTCGCGGTG
CCCGACACCAACCCCGAGGTGCTTACAGAGGAGGCGGCGGCCGCGGCCGA
GGAAAAGGCGAGAGCGGCGATGGCGGCGGCCCTCGGTGCCGGGCCTGTAG
TGGTGGGCGGCGAGCCTGTGGATGACGTAGACGCCCTGTCTTCGGCGTCC
TCGCTGCTGCGCATGGAG
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