mRNA_E-fasciculatus_F_contig15718.3948.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15718.3948.1
Unique NamemRNA_E-fasciculatus_F_contig15718.3948.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15718.3948.1 vs. uniprot
Match: D7G925_ECTSI (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G925_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-22
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:    2 SASHWNPPRVWLSAAETDASHAGLMEGALCAGKRVAEQVILAGIVAPEQGGETAKEGEEEAT*TTSGGNV 211
            SASH   PRVWLSAAETDA HAGLMEGAL AGKRVAEQVILAGIVA +Q  E AKE  EEAT T SGGN 
Sbjct:  224 SASHGGAPRVWLSAAETDARHAGLMEGALVAGKRVAEQVILAGIVASKQDSEAAKE--EEATCTASGGNA 291
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15718.3948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G925_ECTSI3.490e-2278.57Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15718contigE-fasciculatus_F_contig15718:1789..2735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.9168575-CDS-E-fasciculatus_F_contig15718:1788..19401622928042.9168575-CDS-E-fasciculatus_F_contig15718:1788..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 1789..1940 -
1695995800.914859-CDS-E-fasciculatus_F_contig15718:1788..19401695995800.914859-CDS-E-fasciculatus_F_contig15718:1788..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 1789..1940 -
1622928042.9330506-CDS-E-fasciculatus_F_contig15718:2620..27351622928042.9330506-CDS-E-fasciculatus_F_contig15718:2620..2735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 2621..2735 -
1695995800.9249625-CDS-E-fasciculatus_F_contig15718:2620..27351695995800.9249625-CDS-E-fasciculatus_F_contig15718:2620..2735Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 2621..2735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15718.3948.1prot_E-fasciculatus_F_contig15718.3948.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15718 1789..2735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15718.3948.1

>prot_E-fasciculatus_F_contig15718.3948.1 ID=prot_E-fasciculatus_F_contig15718.3948.1|Name=mRNA_E-fasciculatus_F_contig15718.3948.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
LGFTLEPSSCLVIRGGNGCEPRGTDGGCSVCRQEGSGTGDSRRDRGARAR
WRNSQRRRRRGHVNDVGRKCALGQPMSGVSAYLFRVGS*
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mRNA from alignment at E-fasciculatus_F_contig15718:1789..2735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15718.3948.1 ID=mRNA_E-fasciculatus_F_contig15718.3948.1|Name=mRNA_E-fasciculatus_F_contig15718.3948.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=947bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15718:1789..2735- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGGCTTCACATTGGAACCCTCCTCGTGTCTGGTTATCCGCGGCGGAAA
CGGATGCGAGCCACGCGGGACTGATGGAGGGTGCTCTGTGTGCCGGCAAG
AGGGTAGCGGAACAGGTGCGTCAGCATCGAGCTTCGCTACCGGCGGCTTC
AGCGTGAAGTGTTTTTTTTTGCGTGTCATGTACGTGTGCCTTCCCCCTCT
TTCTTTGAATCTCGCAGTCTGACGAAGCATCGACGGGATACATGCCTCTT
CCCAGGCGCTGGTCGCTGTCACTGAATAGTGGTCGCTTGATCATGTCCTT
GGAACGCATTAGGCCGCCCCCTTTCAAACAGAAGAAGACCTAATCCCAAA
GCAATAGCATAAACGCCGCGGATGTTGCATTCAGAAGGGTACAGCACATA
GCCAAGTTATGGGATAGGGACCAGTATTGTGGCTACTCCTCACACAGCCA
TTCCACACCCTGCTCTCTTTTTGCGAACCGTCGTCTTCAACGGAGATGTA
TGCTCCTAGTGCTCCTTCACCGTGTCTTGCTTTCCTTTCCCCCTCCCGTT
TTGGCGTTTGTCGTTTGGGCAGAGGGAGGAGGGCGATATCGCACCTCCTT
CACAGCACACCTCTCTTCGTTGGGACCCCAAACAAGACAGACAGCAAGTA
GTCCTCGCATGCCCGTCCGCCCCGTTCTTGTCCTGTCGTAGTAAGTGTGG
ATGTACCGCACACCTCTGCCTTGTTGAGGGGAAACCGAGGCGTGTGAGCA
AGTCCAACTTGCGTGACTGACCATGTGTGTTTTTGTTTTGACCAGGTGAT
TCTCGCAGGGATCGTGGCGCCAGAGCAAGGTGGCGAAACAGCCAAAGAAG
GAGAAGAAGAGGCCACGTGAACGACGTCGGGAGGAAATGTGCCCTAGGCC
AACCTATGTCGGGAGTTAGTGCGTACCTATTTCGTGTGGGGTCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15718:1789..2735-

>mRNA_E-fasciculatus_F_contig15718.3948.1 ID=mRNA_E-fasciculatus_F_contig15718.3948.1|Name=mRNA_E-fasciculatus_F_contig15718.3948.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15718:1789..2735- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGGCTTCACATTGGAACCCTCCTCGTGTCTGGTTATCCGCGGCGGAAA
CGGATGCGAGCCACGCGGGACTGATGGAGGGTGCTCTGTGTGCCGGCAAG
AGGGTAGCGGAACAGCTCGGCTTCACATTGGAACCCTCCTCGTGTCTGGT
TATCCGCGGCGGAAACGGATGCGAGCCACGCGGGACTGATGGAGGGTGCT
CTGTGTGCCGGCAAGAGGGTAGCGGAACAGGTGATTCTCGCAGGGATCGT
GGCGCCAGAGCAAGGTGGCGAAACAGCCAAAGAAGGAGAAGAAGAGGCCA
CGTGAACGACGTCGGGAGGAAATGTGCCCTAGGCCAACCTATGTCGGGAG
TTAGTGCGTACCTATTTCGTGTGGGGTCGTGAGTGATTCTCGCAGGGATC
GTGGCGCCAGAGCAAGGTGGCGAAACAGCCAAAGAAGGAGAAGAAGAGGC
CACGTGAACGACGTCGGGAGGAAATGTGCCCTAGGCCAACCTATGTCGGG
AGTTAGTGCGTACCTATTTCGTGTGGGGTCGTGA
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