mRNA_E-fasciculatus_F_contig15716.3946.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15716.3946.1
Unique NamemRNA_E-fasciculatus_F_contig15716.3946.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15716.3946.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.500e-40
Identity = 180/269 (66.91%), Postives = 187/269 (69.52%), Query Frame = 1 
Query:    4 RIAACSTARAGRPTRPGASASMFASPLRLGLLPPHPRSVRGVAHLPRRSAAAASRQVGARGARPLHGLSGRAASVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGQDDGTPAGDGTKRGGEKQAKQGGRSSSRPRQATTGPRAGQRGAAARVGGIAGGARETRDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEYDYRSIGSEVYEGGDLEAGETMRGMYDFVDDIVETQHVPTIQDPFDHRGRFH 810
            R AACST+RAGRP+RP AS+SMFA+PLRLGLLPPHPRSVRGV HLPRRSA AAS +V ARG RP HG+SGRA  VEGG         XXXXXXXXXXXXXXXXXXXXXXX                                                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GEYDYRSIGSEVYEGGDLEAGET+RGMYDFVDDIVETQHVPTIQDPFDHRGRFH
Sbjct:   10 RSAACSTSRAGRPSRPAASSSMFAAPLRLGLLPPHPRSVRGVCHLPRRSATAASHRVVARGTRPFHGVSGRARGVEGGEGLDWGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYDYRSIGSEVYEGGDLEAGETIRGMYDFVDDIVETQHVPTIQDPFDHRGRFH 276
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15716.3946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2B0_ECTSI2.500e-4066.91Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15716contigE-fasciculatus_F_contig15716:164..974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S18
Ec32 orthologEc-16_001820.2
Exons1
Model size813
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.866029-CDS-E-fasciculatus_F_contig15716:163..7001622928042.866029-CDS-E-fasciculatus_F_contig15716:163..700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15716 164..700 -
1695995800.8942778-CDS-E-fasciculatus_F_contig15716:163..7001695995800.8942778-CDS-E-fasciculatus_F_contig15716:163..700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15716 164..700 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.8817904-UTR-E-fasciculatus_F_contig15716:700..9741622928042.8817904-UTR-E-fasciculatus_F_contig15716:700..974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15716 701..974 -
1695995800.90463-UTR-E-fasciculatus_F_contig15716:700..9741695995800.90463-UTR-E-fasciculatus_F_contig15716:700..974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15716 701..974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15716.3946.1prot_E-fasciculatus_F_contig15716.3946.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15716 164..700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15716.3946.1

>prot_E-fasciculatus_F_contig15716.3946.1 ID=prot_E-fasciculatus_F_contig15716.3946.1|Name=mRNA_E-fasciculatus_F_contig15716.3946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp
MRGIPLPLLPHPLIAVTTTTKGRMMALRPETALNAVERSRRSRGGEAAAG
RAKQQQARGRGNGEQQHGLAVSPAGRERPETRPPSLRRPLLLLLLLPPPG
RAVGPLPRRRGAVAPSPRRKRKTTVASTTTAASGARSTRAETWRPGRRCE
GCTTSSTTSWRPSTCRPSRTPSTTGAGST
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mRNA from alignment at E-fasciculatus_F_contig15716:164..974-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15716.3946.1 ID=mRNA_E-fasciculatus_F_contig15716.3946.1|Name=mRNA_E-fasciculatus_F_contig15716.3946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=811bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15716:164..974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCGAATAGCAGCATGCTCAACTGCACGCGCGGGGCGACCCACGCGCCC
AGGGGCGTCTGCATCAATGTTCGCGTCGCCTCTGCGCCTCGGCCTGCTCC
CTCCTCACCCCCGCTCCGTCAGGGGAGTTGCTCACTTGCCCAGGCGTTCA
GCCGCCGCCGCGTCGCGCCAGGTGGGCGCCCGGGGAGCTCGGCCGCTCCA
CGGCCTCAGCGGTAGAGCAGCGAGTGTAGAAGGAGGGGGAGGATTAGGGC
GGCGGCGGGCGGCGGCGGCGGGAGATGAGGGGGATTCCTCTTCCTCTTCT
TCCTCATCCTCTGATAGCAGTGACGACGACAACGAAGGGCAGGATGATGG
CACTCCGGCCGGAGACGGCACTAAACGCGGTGGAGAGAAGCAGGCGAAGC
AGGGGGGGAGAAGCAGCAGCAGGCCGCGCCAAGCAACAACAGGCCCGAGG
GCGGGGCAACGGGGAGCAGCAGCACGGGTTGGCGGTATCGCCGGCGGGGC
GAGAGAGACCAGAGACGCGGCCGCCGTCTCTGCGGCGACCGCTGCTGCTG
CTGCTGCTGCTACCCCCGCCGGGGAGAGCCGTGGGGCCGCTGCCTCGAAG
GCGGGGGGCGGTGGCGCCGTCGCCGAGGAGGAAGAGGAAGACGACGGTGG
CGAGTACGACTACCGCAGCATCGGGAGCGAGGTCTACGAGGGCGGAGACT
TGGAGGCCGGGGAGACGATGCGAGGGATGTACGACTTCGTCGACGACATC
GTGGAGACCCAGCACGTGCCGACCATCCAGGACCCCTTCGACCACAGGGG
CAGGTTCCACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15716:164..974-

>mRNA_E-fasciculatus_F_contig15716.3946.1 ID=mRNA_E-fasciculatus_F_contig15716.3946.1|Name=mRNA_E-fasciculatus_F_contig15716.3946.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15716:164..974- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGGGGATTCCTCTTCCTCTTCTTCCTCATCCTCTGATAGCAGTGAC
GACGACAACGAAGGGCAGGATGATGGCACTCCGGCCGGAGACGGCACTAA
ACGCGGTGGAGAGAAGCAGGCGAAGCAGGGGGGGAGAAGCAGCAGCAGGC
CGCGCCAAGCAACAACAGGCCCGAGGGCGGGGCAACGGGGAGCAGCAGCA
CGGGTTGGCGGTATCGCCGGCGGGGCGAGAGAGACCAGAGACGCGGCCGC
CGTCTCTGCGGCGACCGCTGCTGCTGCTGCTGCTGCTACCCCCGCCGGGG
AGAGCCGTGGGGCCGCTGCCTCGAAGGCGGGGGGCGGTGGCGCCGTCGCC
GAGGAGGAAGAGGAAGACGACGGTGGCGAGTACGACTACCGCAGCATCGG
GAGCGAGGTCTACGAGGGCGGAGACTTGGAGGCCGGGGAGACGATGCGAG
GGATGTACGACTTCGTCGACGACATCGTGGAGACCCAGCACGTGCCGACC
ATCCAGGACCCCTTCGACCACAGGGGCAGGTTCCACAATGAGGGGGATTC
CTCTTCCTCTTCTTCCTCATCCTCTGATAGCAGTGACGACGACAACGAAG
GGCAGGATGATGGCACTCCGGCCGGAGACGGCACTAAACGCGGTGGAGAG
AAGCAGGCGAAGCAGGGGGGGAGAAGCAGCAGCAGGCCGCGCCAAGCAAC
AACAGGCCCGAGGGCGGGGCAACGGGGAGCAGCAGCACGGGTTGGCGGTA
TCGCCGGCGGGGCGAGAGAGACCAGAGACGCGGCCGCCGTCTCTGCGGCG
ACCGCTGCTGCTGCTGCTGCTGCTACCCCCGCCGGGGAGAGCCGTGGGGC
CGCTGCCTCGAAGGCGGGGGGCGGTGGCGCCGTCGCCGAGGAGGAAGAGG
AAGACGACGGTGGCGAGTACGACTACCGCAGCATCGGGAGCGAGGTCTAC
GAGGGCGGAGACTTGGAGGCCGGGGAGACGATGCGAGGGATGTACGACTT
CGTCGACGACATCGTGGAGACCCAGCACGTGCCGACCATCCAGGACCCCT
TCGACCACAGGGGCAGGTTCCACA
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