mRNA_E-fasciculatus_F_contig15709.3942.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15709.3942.1
Unique NamemRNA_E-fasciculatus_F_contig15709.3942.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.490e-54
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 1
Query:    1 DTAFALDVSNSACVPSLTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATETWRLT 309
            DTAFALDVSNSACVPSLTITLEWTGE SDVDLYVVEPGG +V++S++ GDVG LDNDDT GFGPENYIIDS LDPAASQVLGEYETYV+LY GDAATETWRLT
Sbjct:  299 DTAFALDVSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLT 401          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 6.140e-54
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 1
Query:    1 DTAFALDVSNSACVPSLTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATETWRLT 309
            DTAFALDVSNSACVPSLTITLEWTGE+SDVDLYVVEPGG +V++S++ GDVG LDNDDT GFGPENYIIDS LDPAASQVLGEYETYV+LY GDAATETWRLT
Sbjct:  425 DTAFALDVSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLT 527          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A1SZC5_PSYIN (DUF2135 domain-containing protein n=1 Tax=Psychromonas ingrahamii (strain 37) TaxID=357804 RepID=A1SZC5_PSYIN)

HSP 1 Score: 69.3 bits (168), Expect = 1.320e-11
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 DTAFALDVSNSACVPSLTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATETWRLT 309
            +T F L ++ +  + +   +L W G+  DVDL+  EP G  V+Y  K GD G+LD DDT GFGPENY +        S   G Y+  V  +RG+A TET ++T
Sbjct:  305 NTPFPLQIAGTGAIRA---SLSWGGQP-DVDLHAYEPNGRHVYYRSKTGDDGILDVDDTSGFGPENYTV-----ACESVNAGTYQIGVNYFRGNA-TETAKVT 397          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A7W2T1G3_9GAMM (DUF2135 domain-containing protein n=1 Tax=Colwellia sp. BRX10-3 TaxID=2759844 RepID=A0A7W2T1G3_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 1.180e-10
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 DTAFALDVSNSACVPSLTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATETWRLT 309
            DT F + ++ +    S+  +L W G+  DVDL+  EP G  V+YS+K GD G+LD DD +G GPENY +        S  +G Y+  V  Y G +A ET ++T
Sbjct:  305 DTPFPVQIAGTG---SIRASLSW-GDQPDVDLHAYEPNGEHVYYSNKTGDDGILDVDDVNGEGPENYTVS-----CESVNVGTYKIGVNYYSG-SAPETAKVT 397          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: UPI001F43C791 (hypothetical protein n=1 Tax=Vibrio sp. SS-MA-C1-2 TaxID=2908646 RepID=UPI001F43C791)

HSP 1 Score: 64.3 bits (155), Expect = 2.490e-10
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   49 LTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGD 282
            +T TL W GE  DVDL+V+EP G +V+Y +++GDVG LD DDT  +GPE+Y          S + G+Y   V  ++G+
Sbjct:  123 ITATLTW-GEEPDVDLHVIEPMGNMVFYGNRVGDVGELDVDDTSSYGPEHYYA-----RCDSLLPGKYVFGVNYFKGN 194          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A6N6Z8I4_9BACT (Uncharacterized protein n=1 Tax=Puniceicoccaceae bacterium 5H TaxID=2508868 RepID=A0A6N6Z8I4_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 2.060e-9
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   49 LTITLEWTGESSDVDLYVVEPGGVLVWYSDKI-GDVGVLDNDDTDGFGPENYII 207
            + +TL WT + +DVDLYV +P G   WYSDK   D G LD DDTDG+GPE++ +
Sbjct:  580 ILVTLTWTTDQTDVDLYVTDPTGDTSWYSDKTTADGGELDFDDTDGYGPEHWTL 633          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-8
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   10 FALDVSNSACVPSLTITLEWTG------ESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGP--ENYIIDSGLDPAASQVLGEYETYVRLYRGDAATE-TWRLT 309
            F+L +SN ACVPSLTIT EW G      E ++ DL  +  G     + +  G VGV   D+  G  P  + YI+ SGLD   SQVLGEY+    L    + T  TWR+T
Sbjct:  943 FSLQISNMACVPSLTITHEWIGGNFAPYEITEPDLTTIHSG-----HGNYSGGVGVF-QDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRIT 1045          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A2N2YQV1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-16 TaxID=2013684 RepID=A0A2N2YQV1_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-8
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   49 LTITLEWTGESSDVDLYVVEPGGVLVWYSDKIG-DVGVLDNDDTDGFGPEN-YIIDSGLDPAASQVLGEYETYVRLYRGDAAT 291
            L I L W  + +DVDL+V +P G  ++YS+      G LD DDT+GFGPEN Y +D+  D       G Y   V  Y GD AT
Sbjct:  366 LQIGLSWNTDDTDVDLWVTDPSGEKIYYSNTTSASGGYLDRDDTNGFGPENIYWVDNIPD-------GNYLIQVHYYSGDPAT 441          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A1Z5K6X0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6X0_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 6.210e-8
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   37 CVPSLTITLEWTGESSDVDLYVVE--PGGVLVWYSDKIGDVGVLDNDDTDGFGPENY 201
            C   L+ TL W   +SD+DL+V E  P G  V+Y  + G+ GVLD DDT+G+GPENY
Sbjct:  236 CPADLSFTLTWNTPTSDLDLHVFEGEPSGDHVYYVQQSGEYGVLDWDDTEGYGPENY 292          
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Match: A0A0H2SDY4_9BACT (Uncharacterized protein n=1 Tax=Marinitoga sp. 1197 TaxID=1428449 RepID=A0A0H2SDY4_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.480e-7
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   55 ITLEWTGESSDVDLYVVEPGGVLVWYSDKIGDVGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATE 294
            I L W    +D+DL+V+EP    ++Y++K G +G+LD DDTDG+GPE+Y + +       +  G Y+ +V  Y  +   E
Sbjct:  263 IELTWDKSKADIDLHVIEPDNNEIYYNNKQG-IGILDRDDTDGYGPEHYTLLTN-----KKKKGIYKPFVVYYNDNGQRE 336          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15709.3942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D6_ECTSI1.490e-5487.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI6.140e-5487.38VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A1SZC5_PSYIN1.320e-1140.78DUF2135 domain-containing protein n=1 Tax=Psychrom... [more]
A0A7W2T1G3_9GAMM1.180e-1039.81DUF2135 domain-containing protein n=1 Tax=Colwelli... [more]
UPI001F43C7912.490e-1043.59hypothetical protein n=1 Tax=Vibrio sp. SS-MA-C1-2... [more]
A0A6N6Z8I4_9BACT2.060e-953.70Uncharacterized protein n=1 Tax=Puniceicoccaceae b... [more]
A0A6H5JLL4_9PHAE2.530e-842.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N2YQV1_9BACT3.260e-843.37Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A1Z5K6X0_FISSO6.210e-850.88Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A0H2SDY4_9BACT1.480e-736.25Uncharacterized protein n=1 Tax=Marinitoga sp. 119... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15709contigE-fasciculatus_F_contig15709:2010..2565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.6e-45
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.1913428-CDS-E-fasciculatus_F_contig15709:2009..21711622928042.1913428-CDS-E-fasciculatus_F_contig15709:2009..2171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15709 2010..2171 -
1695995800.6440086-CDS-E-fasciculatus_F_contig15709:2009..21711695995800.6440086-CDS-E-fasciculatus_F_contig15709:2009..2171Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15709 2010..2171 -
1622928042.2101412-CDS-E-fasciculatus_F_contig15709:2418..25651622928042.2101412-CDS-E-fasciculatus_F_contig15709:2418..2565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15709 2419..2565 -
1695995800.656879-CDS-E-fasciculatus_F_contig15709:2418..25651695995800.656879-CDS-E-fasciculatus_F_contig15709:2418..2565Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15709 2419..2565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15709.3942.1prot_E-fasciculatus_F_contig15709.3942.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15709 2010..2565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15709.3942.1

>prot_E-fasciculatus_F_contig15709.3942.1 ID=prot_E-fasciculatus_F_contig15709.3942.1|Name=mRNA_E-fasciculatus_F_contig15709.3942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
DTAFALDVSNSACVPSLTITLEWTGESSDVDLYVVEPGGVLVWYSDKIGD
VGVLDNDDTDGFGPENYIIDSGLDPAASQVLGEYETYVRLYRGDAATETW
RLT
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mRNA from alignment at E-fasciculatus_F_contig15709:2010..2565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15709.3942.1 ID=mRNA_E-fasciculatus_F_contig15709.3942.1|Name=mRNA_E-fasciculatus_F_contig15709.3942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15709:2010..2565- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACACGGCGTTCGCGCTCGATGTCTCCAACTCTGCCTGTGTGCCATCGCT GACGATCACCCTGGAGTGGACCGGCGAGAGTTCCGACGTAGATCTCTACG TGGTCGAGCCCGGCGGAGTTTTGGTGTGGTACAGCGACAAAATTGGGGTA AGCGAAGTGCCGACGGAAAGGGGATTTTCAGGCCCGTCTGACCGGCCATT GTGGCCTGTTGCCGTTGGATTGCATCTTGGGGGAGTCGAACAAGCTTTGG CGCGCACGGGTCGGCAGCACAGTGTTCAGTGGCATCAGCCGTAGCCATGA GCACTCCCAAAAAGTACCTTGTATGACGGAAGCTGTCGTCACTTATTGCT TATCTCCGCCTTTCTCCCAAACCTGCTGCTGATTCCCTACATAGGACGTC GGGGTCCTCGACAACGACGACACTGACGGCTTCGGGCCCGAGAACTACAT CATCGACAGCGGACTTGATCCCGCCGCCAGCCAGGTGCTTGGCGAGTACG AGACGTACGTCAGGCTCTATAGAGGCGACGCGGCCACGGAAACTTGGCGC CTGACT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15709:2010..2565-

>mRNA_E-fasciculatus_F_contig15709.3942.1 ID=mRNA_E-fasciculatus_F_contig15709.3942.1|Name=mRNA_E-fasciculatus_F_contig15709.3942.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15709:2010..2565- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACACGGCGTTCGCGCTCGATGTCTCCAACTCTGCCTGTGTGCCATCGCT
GACGATCACCCTGGAGTGGACCGGCGAGAGTTCCGACGTAGATCTCTACG
TGGTCGAGCCCGGCGGAGTTTTGGTGTGGTACAGCGACAAAATTGGGGAC
ACGGCGTTCGCGCTCGATGTCTCCAACTCTGCCTGTGTGCCATCGCTGAC
GATCACCCTGGAGTGGACCGGCGAGAGTTCCGACGTAGATCTCTACGTGG
TCGAGCCCGGCGGAGTTTTGGTGTGGTACAGCGACAAAATTGGGGACGTC
GGGGTCCTCGACAACGACGACACTGACGGCTTCGGGCCCGAGAACTACAT
CATCGACAGCGGACTTGATCCCGCCGCCAGCCAGGTGCTTGGCGAGTACG
AGACGTACGTCAGGCTCTATAGAGGCGACGCGGCCACGGAAACTTGGCGC
CTGACTGACGTCGGGGTCCTCGACAACGACGACACTGACGGCTTCGGGCC
CGAGAACTACATCATCGACAGCGGACTTGATCCCGCCGCCAGCCAGGTGC
TTGGCGAGTACGAGACGTACGTCAGGCTCTATAGAGGCGACGCGGCCACG
GAAACTTGGCGCCTGACT
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