mRNA_E-fasciculatus_F_contig10491.394.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10491.394.1
Unique NamemRNA_E-fasciculatus_F_contig10491.394.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10491.394.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 3.990e-109
Identity = 198/236 (83.90%), Postives = 209/236 (88.56%), Query Frame = 1 
Query:    1 RKRKGRGGEEGVPAADDDLA---VGGAAAAGEGESMSPLPSEKSSSRRARRPPTLVPTKGIVVAKAMGVTGLALAELMQYK------EYASNKVRELGLESGEAVDATVLEGRAYPHLDAMRYRLNLLQTLVCATSHVITPGQADGLWLALVGRAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAAGNGHCRGVQGGAAVAVAVAPDVMAVDGEATGGGIRDG 681
            RKR+ RGGEEGVP A+DDLA   V  A+AAGEGES SP  SEK SSRRARRPPTLVPTKGIVVAKAMGVTGLALAELMQYK      EYASNKVRELGLESGEAVDA VLEGRAYPHLDAMRYRLNLLQTLVCATSHVITPGQA+GLWLALV RAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPA GNGHCRG+QGG+    A  PD++AVDG+ATGG +R+G
Sbjct: 1114 RKRERRGGEEGVPVANDDLASVSVAPASAAGEGESTSPPASEKFSSRRARRPPTLVPTKGIVVAKAMGVTGLALAELMQYKASQWSLEYASNKVRELGLESGEAVDAAVLEGRAYPHLDAMRYRLNLLQTLVCATSHVITPGQAEGLWLALVERAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAVGNGHCRGMQGGSTTVPA--PDLLAVDGKATGGRVRNG 1347
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BLAST of mRNA_E-fasciculatus_F_contig10491.394.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.020e-48
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:  334 MRYRLNLLQTLVCATSHVITPGQADGLWLALVGRAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAAGNGHCRGVQGGAAVAVAVAPDVMAVDGE 654
            MRYRLNLLQTLVCATSHVITPGQA+GLWLALV RAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAAGNGHCRGV+GG+       PD+MAVD E
Sbjct:    1 MRYRLNLLQTLVCATSHVITPGQAEGLWLALVERAVSTAELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAAGNGHCRGVRGGSTTVAT--PDLMAVDAE 105
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BLAST of mRNA_E-fasciculatus_F_contig10491.394.1 vs. uniprot
Match: D7FK74_ECTSI (Similar to ubiquitin specific protease 34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK74_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 8.940e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:  145 PPTLVPTKGIVVAKAMGVTGLALAELMQYK 234
            PPTLVPTKGIVVAKAMGVTGLALAELMQYK
Sbjct: 1175 PPTLVPTKGIVVAKAMGVTGLALAELMQYK 1204
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10491.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFW4_9PHAE3.990e-10983.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK75_ECTSI1.020e-4887.85Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
D7FK74_ECTSI8.940e-7100.00Similar to ubiquitin specific protease 34 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10491contigE-fasciculatus_F_contig10491:1523..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue9.5e-45
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size762
Cds size762
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.2948337-CDS-E-fasciculatus_F_contig10491:1522..17561622927546.2948337-CDS-E-fasciculatus_F_contig10491:1522..1756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10491 1523..1756 +
1695995588.8499107-CDS-E-fasciculatus_F_contig10491:1522..17561695995588.8499107-CDS-E-fasciculatus_F_contig10491:1522..1756Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10491 1523..1756 +
1622927546.3067539-CDS-E-fasciculatus_F_contig10491:2592..31201622927546.3067539-CDS-E-fasciculatus_F_contig10491:2592..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10491 2593..3120 +
1695995588.8598506-CDS-E-fasciculatus_F_contig10491:2592..31201695995588.8598506-CDS-E-fasciculatus_F_contig10491:2592..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10491 2593..3120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10491.394.1prot_E-fasciculatus_F_contig10491.394.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10491 1523..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10491.394.1

>prot_E-fasciculatus_F_contig10491.394.1 ID=prot_E-fasciculatus_F_contig10491.394.1|Name=mRNA_E-fasciculatus_F_contig10491.394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=254bp
RKRKGRGGEEGVPAADDDLAVGGAAAAGEGESMSPLPSEKSSSRRARRPP
TLVPTKGIVVAKAMGVTGLALAELMQYKEYASNKVRELGLESGEAVDATV
LEGRAYPHLDAMRYRLNLLQTLVCATSHVITPGQADGLWLALVGRAVSTA
ELDSSFQALLGLGREAPEGLAALAGTFFERMCCQGGGPAAGNGHCRGVQG
GAAVAVAVAPDVMAVDGEATGGGIRDGGGSMTTTPDSSSSSRSKSAAAAA
KVSD
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mRNA from alignment at E-fasciculatus_F_contig10491:1523..3120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10491.394.1 ID=mRNA_E-fasciculatus_F_contig10491.394.1|Name=mRNA_E-fasciculatus_F_contig10491.394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1598bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10491:1523..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAAGAGAAAAGGTAGAGGGGGGGAGGAGGGTGTTCCGGCGGCAGACGA
CGACCTGGCTGTTGGTGGTGCTGCTGCTGCCGGAGAGGGGGAGTCTATGT
CGCCGCTGCCGTCGGAGAAGTCTAGCAGCCGGAGGGCCAGGAGGCCGCCG
ACCCTGGTGCCGACGAAGGGGATCGTGGTGGCGAAGGCGATGGGGGTCAC
GGGGCTGGCCCTCGCGGAGCTCATGCAGTACAAGGCAAGGCAGTGGCATG
GTCGTTCGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTCGTTG
ATATCTTTACATCGTTTTTTTTGTACGATGCAGTACCTCCTTGTAGATAT
TTCAAACCAGGGCAAGACATCATGGTCGTTGTTGTTGTTGTTGTTGTGGT
GGCTGCCTTGATATCGAAATCAATTCTTGTTGCCATCCAGTGCCTCGTTG
TGGCTGCACTCTTTCAAGCAAAGGCAAAGAACCAAATTTCTGTGGAAACA
AGCTGAGCCAGCATCGGGTAACTGCAGTGGACAAAAAAACTGTGCGTGTT
TCTATTCTGCGATTGTGTTGAAGTCATTGCCCCTCGCAGGTACGGGCGTG
TCGGCGTTGTGTGCTCTTGCCGTGGGTTTTGGCATCACGGCTCCCCGGCT
CCGTACAGTATGGAGTGACAGTTGTTGTGTCGTGTTGCTGTCATTGTCCT
TATCTATTCCTTGCGCCGGTCTAGACCTTTCTGTATCTGTTAGATGCACC
AGCCGGGGGCTCACAGGAGACATGTTTCTTTTACGAGCAGCTGCGTATCC
CGTCGTCGCGGTACCTCACGAACGTGGCAGATGCACAGCAGCGCGCATGC
GCATACTCCAAGTTTTTTCTCAAACGCCAAGTTTTGGGAGTCGATCTTCT
ACGAGGGGGAGTGTGGGCGTCCTCATGTTTTGCATGCCTTAGTTGTTAGA
CCGTTGACCACGCGTCCTCGAGAGGACGGAGCATTGACCGATCACCGATG
GCCAATCGCTGCTACGAGGGGTGCGGAAATCACAAATAAACGCCCGGTTG
CCCCCCCCCCACACACACAGGAGTACGCCTCCAATAAGGTGCGCGAGCTT
GGCCTGGAGTCGGGGGAAGCCGTAGACGCTACGGTCCTCGAGGGGCGGGC
GTACCCCCACCTGGACGCGATGCGGTACCGCCTCAACCTCCTGCAGACGC
TCGTGTGCGCCACGTCCCACGTGATCACGCCGGGTCAGGCGGACGGCCTG
TGGCTCGCCCTCGTGGGGCGTGCGGTGTCGACGGCGGAGCTGGACTCGAG
TTTTCAGGCGTTGCTGGGTCTTGGGCGGGAGGCACCGGAGGGACTCGCCG
CCCTCGCCGGCACTTTCTTCGAGCGCATGTGCTGTCAAGGTGGGGGGCCG
GCGGCAGGGAATGGACACTGCCGGGGGGTGCAGGGCGGTGCGGCGGTGGC
GGTGGCGGTAGCCCCTGATGTCATGGCCGTCGATGGCGAGGCCACGGGCG
GCGGGATACGCGACGGGGGTGGGTCGATGACAACAACACCCGACAGCAGC
AGCAGCAGTCGCAGCAAGAGCGCCGCAGCCGCCGCCAAGGTGAGCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10491:1523..3120+

>mRNA_E-fasciculatus_F_contig10491.394.1 ID=mRNA_E-fasciculatus_F_contig10491.394.1|Name=mRNA_E-fasciculatus_F_contig10491.394.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10491:1523..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAAGAGAAAAGGTAGAGGGGGGGAGGAGGGTGTTCCGGCGGCAGACGA
CGACCTGGCTGTTGGTGGTGCTGCTGCTGCCGGAGAGGGGGAGTCTATGT
CGCCGCTGCCGTCGGAGAAGTCTAGCAGCCGGAGGGCCAGGAGGCCGCCG
ACCCTGGTGCCGACGAAGGGGATCGTGGTGGCGAAGGCGATGGGGGTCAC
GGGGCTGGCCCTCGCGGAGCTCATGCAGTACAAGCGGAAGAGAAAAGGTA
GAGGGGGGGAGGAGGGTGTTCCGGCGGCAGACGACGACCTGGCTGTTGGT
GGTGCTGCTGCTGCCGGAGAGGGGGAGTCTATGTCGCCGCTGCCGTCGGA
GAAGTCTAGCAGCCGGAGGGCCAGGAGGCCGCCGACCCTGGTGCCGACGA
AGGGGATCGTGGTGGCGAAGGCGATGGGGGTCACGGGGCTGGCCCTCGCG
GAGCTCATGCAGTACAAGGAGTACGCCTCCAATAAGGTGCGCGAGCTTGG
CCTGGAGTCGGGGGAAGCCGTAGACGCTACGGTCCTCGAGGGGCGGGCGT
ACCCCCACCTGGACGCGATGCGGTACCGCCTCAACCTCCTGCAGACGCTC
GTGTGCGCCACGTCCCACGTGATCACGCCGGGTCAGGCGGACGGCCTGTG
GCTCGCCCTCGTGGGGCGTGCGGTGTCGACGGCGGAGCTGGACTCGAGTT
TTCAGGCGTTGCTGGGTCTTGGGCGGGAGGCACCGGAGGGACTCGCCGCC
CTCGCCGGCACTTTCTTCGAGCGCATGTGCTGTCAAGGTGGGGGGCCGGC
GGCAGGGAATGGACACTGCCGGGGGGTGCAGGGCGGTGCGGCGGTGGCGG
TGGCGGTAGCCCCTGATGTCATGGCCGTCGATGGCGAGGCCACGGGCGGC
GGGATACGCGACGGGGGTGGGTCGATGACAACAACACCCGACAGCAGCAG
CAGCAGTCGCAGCAAGAGCGCCGCAGCCGCCGCCAAGGTGAGCGACGAGT
ACGCCTCCAATAAGGTGCGCGAGCTTGGCCTGGAGTCGGGGGAAGCCGTA
GACGCTACGGTCCTCGAGGGGCGGGCGTACCCCCACCTGGACGCGATGCG
GTACCGCCTCAACCTCCTGCAGACGCTCGTGTGCGCCACGTCCCACGTGA
TCACGCCGGGTCAGGCGGACGGCCTGTGGCTCGCCCTCGTGGGGCGTGCG
GTGTCGACGGCGGAGCTGGACTCGAGTTTTCAGGCGTTGCTGGGTCTTGG
GCGGGAGGCACCGGAGGGACTCGCCGCCCTCGCCGGCACTTTCTTCGAGC
GCATGTGCTGTCAAGGTGGGGGGCCGGCGGCAGGGAATGGACACTGCCGG
GGGGTGCAGGGCGGTGCGGCGGTGGCGGTGGCGGTAGCCCCTGATGTCAT
GGCCGTCGATGGCGAGGCCACGGGCGGCGGGATACGCGACGGGGGTGGGT
CGATGACAACAACACCCGACAGCAGCAGCAGCAGTCGCAGCAAGAGCGCC
GCAGCCGCCGCCAAGGTGAGCGAC
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