mRNA_E-fasciculatus_F_contig15702.3940.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15702.3940.1
Unique NamemRNA_E-fasciculatus_F_contig15702.3940.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15702.3940.1 vs. uniprot
Match: A0A6H5KIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN5_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.800e-48
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 3 
Query:    3 MKRELQRVGPIGLEQELLYPWPPVTGQHQAVVAAGIAGGGLGAPGMGGVADLHGSREDTAVVHSLTGLRKKRRGLSGGAIPVGGGMAGLPTPPTTPSGNPTGYM 314
            MKRELQRVGPIGLEQELL+PWPPVTGQHQA+ A GI GGG+GAPG+GGVADLHGSREDT VVHSLTGLRKKRRGL+G AIPVG G+AGLPTPPTTPSG+ TGYM
Sbjct:  381 MKRELQRVGPIGLEQELLHPWPPVTGQHQAIGAGGITGGGVGAPGIGGVADLHGSREDTEVVHSLTGLRKKRRGLNGVAIPVGSGLAGLPTPPTTPSGSSTGYM 484
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15702.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIN5_9PHAE2.800e-4886.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15702contigE-fasciculatus_F_contig15702:310..2860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-09_002770.1
Exons2
Model size1725
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15702.3940.1prot_E-fasciculatus_F_contig15702.3940.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15702 2544..2858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.01969-UTR-E-fasciculatus_F_contig15702:309..16981622928042.01969-UTR-E-fasciculatus_F_contig15702:309..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 310..1698 -
1695995800.5715632-UTR-E-fasciculatus_F_contig15702:309..16981695995800.5715632-UTR-E-fasciculatus_F_contig15702:309..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 310..1698 -
1622928042.0419438-UTR-E-fasciculatus_F_contig15702:2524..25431622928042.0419438-UTR-E-fasciculatus_F_contig15702:2524..2543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 2525..2543 -
1695995800.5873642-UTR-E-fasciculatus_F_contig15702:2524..25431695995800.5873642-UTR-E-fasciculatus_F_contig15702:2524..2543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 2525..2543 -
1622928042.084887-UTR-E-fasciculatus_F_contig15702:2858..28601622928042.084887-UTR-E-fasciculatus_F_contig15702:2858..2860Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 2859..2860 -
1695995800.608617-UTR-E-fasciculatus_F_contig15702:2858..28601695995800.608617-UTR-E-fasciculatus_F_contig15702:2858..2860Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15702 2859..2860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.0656989-CDS-E-fasciculatus_F_contig15702:2543..28581622928042.0656989-CDS-E-fasciculatus_F_contig15702:2543..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15702 2544..2858 -
1695995800.5996387-CDS-E-fasciculatus_F_contig15702:2543..28581695995800.5996387-CDS-E-fasciculatus_F_contig15702:2543..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15702 2544..2858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15702.3940.1

>prot_E-fasciculatus_F_contig15702.3940.1 ID=prot_E-fasciculatus_F_contig15702.3940.1|Name=mRNA_E-fasciculatus_F_contig15702.3940.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MKRELQRVGPIGLEQELLYPWPPVTGQHQAVVAAGIAGGGLGAPGMGGVA
DLHGSREDTAVVHSLTGLRKKRRGLSGGAIPVGGGMAGLPTPPTTPSGNP
TGYM*
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mRNA from alignment at E-fasciculatus_F_contig15702:310..2860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15702.3940.1 ID=mRNA_E-fasciculatus_F_contig15702.3940.1|Name=mRNA_E-fasciculatus_F_contig15702.3940.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2551bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15702:310..2860- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATGAAGCGAGAGCTACAGCGCGTCGGACCCATTGGCCTGGAGCAGGAG
CTGCTTTACCCTTGGCCCCCGGTCACGGGACAGCACCAGGCCGTCGTCGC
CGCGGGGATTGCGGGAGGGGGGTTAGGAGCACCAGGGATGGGAGGGGTGG
CAGACTTGCACGGGTCGCGCGAGGATACGGCAGTCGTGCACTCCCTGACC
GGGCTCCGGAAAAAGAGGAGGGGCTTGAGCGGCGGCGCTATTCCTGTCGG
TGGTGGTATGGCTGGCTTGCCCACCCCCCCCACCACTCCCTCGGGGAACC
CTACCGGCTACATGTAGCTGCCTGCGTCCTGTGAAGGTGGGAAAAGGTTG
AAAAAAATGAATCACGCCGGAGTGTTGCGAATATCTGGAGTACTCGGGTT
TCTTTGTGGTTTTTTATTTGTTCGTAGTTTCGCAATGCCTCTTTCTGTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTCTCCCTCTC
TAGCCATTTTTGTAGGTCACCGTTGCGCGTATCGTGTAATTGGGTGAGAT
GTTTATGCGGGGATACTCATCAGGCGTGGAGAGGGGTTCTCCACTTGGTT
TGCCAGCAATCGCATCTTCCTTCATAATGGGAGGTGATTCCTCCCTCCCT
TCAACGATTAGAACGTACTTGAAAACAATCGCGGTACTCGATCCAATCGT
CTCCGATGGGAGGCTTGCTGCTCGGTCCCAATCTCCCGTCCGCGGCACGG
AGTATTGTTGGTTTTCCATCGTTCAGATTGAGTGACGTCACCTTTTAGTG
GTATATGGTACCTTTGCTTTTTTGCCTTGTTCGACAAAGAACCTTGCCGG
AAACACCCGGAACTGAACGTCCGGAACACTCGCCCCCCCCCCCCCCCCCC
CGTCCGTCCGTCCGGGCGAAAGCACATGAGGTATTGAGCTATGTGTCGCC
TCTTGCGTCGAAACCGTCTGTTCGCATTAGCGCCAGAGCGTTGTCCAGCA
TGGCACCGGGGCATTCAATGTCAAAACGCCTCTTGTTTCGACCCTTTTAC
CGAAATGCCATTGGCACCACAATGCCACAAGTGTTTTGGTTGCGGCCTCT
GCTTCACAGATATTGGCCGCCCGCTCGCCGCCCACCGTTTTGTCCGCCCT
GTGCTGCAGCAGGGAGGCCGTGAACGGGCGCGTGCCGGAATGGGACAACC
TCCCTTGTGTACACGAAGGCGTGGTCGTCGGTGTTGGGTGTGGCGCAGAA
GGCCGATGTTGGAGCCGCCCAGGGATTGTGCTGTCTGTCTGCCATTGGTG
CCCCCTCCCCGCGTGTTTTTTTAGTTGCACGCGATGCGGCTGGACAGTAG
TAGGAAAGTGTAGAGAAGTATGGAATGGTCAAACGGTGGGGTACTAGCCT
TTGTCTTGCCCACATTGCGATTGCGGTTCAGTATTTTTTTGCGTGTGCAG
CACGGCATGCGGGACAAGTTGCGTTCTGTAATTGTAGCTGGCGGATGTGG
CCAACATGTGCTGCAAGTCGGTAGGGCAATGGTGCAAGCAGATGCGGCAT
TGCTCGTCGTAGTTGGCGGCGGTTGGGTGAAGTGGGTGTGGTGTCGATAG
AAACATACGCGAATTGTGTTACAATAGAAGTGCATTTTGAACACATCGAG
TGCCTTTTTCTCCTTTTTTCCCCTCTCGTTCATGCCTTGGGTGGTTAGAT
GTGCTGGCGTGGTAACTTTAACTTGTGTCTTGGGGTCAGTCAGTCTTCAT
GCTTCATCTCGATGGCTAGGCCGGGTGATCGTAGTCTATATGGCGGCAGA
ATACCGGTGCTGCCTTGCTTGCGAGACACGTTTGAAATTTCACTTTCGAC
TCTAGATTTTTTTGGCCAACGCCCGAGTGCGCCGCCCGAGCATAGAATGA
GCAACAGGGCGGCGGTGTACAGGAGTTGGGCGTCCCGGCGCAGCGTGCAA
GGTTGGGGGCTATAGTTTTGGGTCCAGGAGAGACGTAAGATTGTAGATAC
CTCGATACGATTGGTGATATGGATACAGCAGTAGAGGCCAAGGGGGGAAC
AACAGCACGGCAATAGAAATCCCACGATTTTTGTTCCACACTTGAATTTT
TATTTTGGGCGTGGTGAGCTTGGGTATGCGATAGGGTGCTCCATTTCCCT
TCCGTGTGCGAGAGGCTCTCGTGCCGTTGGCAGATAGCGGAGTTAGAGAT
TACCAAGTGTTTTTGCGGAAATGCTACATAGCGAGGGTAGAGGAGAAGCG
TCGCTGTCTGGCTCCGCTTGTCGTTTTGGTCCGACTAAAACGACAGCAGT
AGGGACGAGAACCCATGGGCTCTTCTGCTGCTGCGTACCTGGCGCAGTAC
CTAAGCGAACCGCCGAGTTTTTTCAGCGACACGAGGATGTTGGGACCTTC
ACTTGGAAAGGCATCATGTTGCAGCAGGCTATCTGTTTATTTAGTGCTCG
AGGCATCCTATTTGGCTGACAGAAACGGAACCAACCATAACTTTGCATGC
TACACCAGGTGCCAGAAAAATCCGTGTGCATGTAGGTACCCTCTTTTGGC
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15702:310..2860-

>mRNA_E-fasciculatus_F_contig15702.3940.1 ID=mRNA_E-fasciculatus_F_contig15702.3940.1|Name=mRNA_E-fasciculatus_F_contig15702.3940.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15702:310..2860- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCGAGAGCTACAGCGCGTCGGACCCATTGGCCTGGAGCAGGAGCT
GCTTTACCCTTGGCCCCCGGTCACGGGACAGCACCAGGCCGTCGTCGCCG
CGGGGATTGCGGGAGGGGGGTTAGGAGCACCAGGGATGGGAGGGGTGGCA
GACTTGCACGGGTCGCGCGAGGATACGGCAGTCGTGCACTCCCTGACCGG
GCTCCGGAAAAAGAGGAGGGGCTTGAGCGGCGGCGCTATTCCTGTCGGTG
GTGGTATGGCTGGCTTGCCCACCCCCCCCACCACTCCCTCGGGGAACCCT
ACCGGCTACATGTAGATGAAGCGAGAGCTACAGCGCGTCGGACCCATTGG
CCTGGAGCAGGAGCTGCTTTACCCTTGGCCCCCGGTCACGGGACAGCACC
AGGCCGTCGTCGCCGCGGGGATTGCGGGAGGGGGGTTAGGAGCACCAGGG
ATGGGAGGGGTGGCAGACTTGCACGGGTCGCGCGAGGATACGGCAGTCGT
GCACTCCCTGACCGGGCTCCGGAAAAAGAGGAGGGGCTTGAGCGGCGGCG
CTATTCCTGTCGGTGGTGGTATGGCTGGCTTGCCCACCCCCCCCACCACT
CCCTCGGGGAACCCTACCGGCTACATGTAG
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