mRNA_E-fasciculatus_F_contig15691.3935.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15691.3935.1
Unique NamemRNA_E-fasciculatus_F_contig15691.3935.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15691.3935.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.830e-100
Identity = 184/197 (93.40%), Postives = 185/197 (93.91%), Query Frame = 1 
Query:    1 RRWLKSRAGGGPASDAPAKGVKLFHAVGGXXXXXXXXXXXXXXXXXXADDKGAAVVWPLRLLALRGKGTEATQRVQSSLRHDIEVSPVESKEAADDQDDGDTSGVRVLLTSPDASEAKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLSVPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGR 591
            RRWLKSRAGGG A  APAKGVKLFHAVGGXXXXXXXXXXXXXXXXXX D  GAAVVWPLRLLALRGKG EATQRVQSSLRHDIEVS VESKEA DDQ DGDTSGVRVLLTSPDA+E KDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLS PGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGR
Sbjct:  131 RRWLKSRAGGGQAPAAPAKGVKLFHAVGGXXXXXXXXXXXXXXXXXX-DGNGAAVVWPLRLLALRGKGAEATQRVQSSLRHDIEVSSVESKEATDDQGDGDTSGVRVLLTSPDAAETKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLSAPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGR 326
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BLAST of mRNA_E-fasciculatus_F_contig15691.3935.1 vs. uniprot
Match: A0A0G1FKD2_9BACT (Chaperone protein DnaK n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A0G1FKD2_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 2.500e-5
Identity = 31/92 (33.70%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:  304 TSGVRVLLTSPDASEAKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIKTCNLSVPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGY 579
            + GV V +  P A   + +  W  PEE+ AM+LA +KA AE   G  I+   ++VP    D  R + + +  +AG+   R +  P AAA+ Y
Sbjct:   98 SGGVEVKIGDPSAGSGQVK--WYKPEEISAMILAKLKADAENYLGEKIEEAVITVPAYFDDSQRQSTKNAGEIAGLKVRRIINEPTAAALAY 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15691.3935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN8_ECTSI1.830e-10093.40Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A0G1FKD2_9BACT2.500e-533.70Chaperone protein DnaK n=2 Tax=Parcubacteria group... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15691contigE-fasciculatus_F_contig15691:630..2926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size594
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15691.3935.1prot_E-fasciculatus_F_contig15691.3935.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15691 630..2926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928041.1526945-CDS-E-fasciculatus_F_contig15691:629..8091622928041.1526945-CDS-E-fasciculatus_F_contig15691:629..809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 630..809 -
1695995800.0713625-CDS-E-fasciculatus_F_contig15691:629..8091695995800.0713625-CDS-E-fasciculatus_F_contig15691:629..809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 630..809 -
1622928041.1720698-CDS-E-fasciculatus_F_contig15691:1868..20311622928041.1720698-CDS-E-fasciculatus_F_contig15691:1868..2031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 1869..2031 -
1695995800.0803475-CDS-E-fasciculatus_F_contig15691:1868..20311695995800.0803475-CDS-E-fasciculatus_F_contig15691:1868..2031Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 1869..2031 -
1622928041.1920252-CDS-E-fasciculatus_F_contig15691:2675..29261622928041.1920252-CDS-E-fasciculatus_F_contig15691:2675..2926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 2676..2926 -
1695995800.0890849-CDS-E-fasciculatus_F_contig15691:2675..29261695995800.0890849-CDS-E-fasciculatus_F_contig15691:2675..2926Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15691 2676..2926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15691.3935.1

>prot_E-fasciculatus_F_contig15691.3935.1 ID=prot_E-fasciculatus_F_contig15691.3935.1|Name=mRNA_E-fasciculatus_F_contig15691.3935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=198bp
RRWLKSRAGGGPASDAPAKGVKLFHAVGGGGGGGKGNSSGGSGSAGAADD
KGAAVVWPLRLLALRGKGTEATQRVQSSLRHDIEVSPVESKEAADDQDDG
DTSGVRVLLTSPDASEAKDREVWVTPEEVLAMLLAGVKAKAEEAHGVMIK
TCNLSVPGCLGDLHRVALQRSVFLAGMVPGRFVGSPLAAAVGYLWGR*
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mRNA from alignment at E-fasciculatus_F_contig15691:630..2926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15691.3935.1 ID=mRNA_E-fasciculatus_F_contig15691.3935.1|Name=mRNA_E-fasciculatus_F_contig15691.3935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2297bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15691:630..2926- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAGGTGGTTAAAGTCCCGGGCGGGAGGCGGCCCGGCCTCAGATGCTCC
CGCGAAGGGCGTCAAGTTGTTCCACGCCGTGGGAGGAGGGGGCGGGGGGG
GCAAGGGCAACAGCAGTGGCGGTAGCGGTAGCGCGGGTGCCGCTGACGAC
AAGGGGGCTGCGGTGGTGTGGCCGCTGCGCCTGCTGGCGCTGAGGGGGAA
GGGCACGGAGGCGACGCAGCGGGTGCAGTCCTCCCTCCGACACGACATCG
AGTACGTAGCGGCTGCCTTGTTTGGGTGGCTGTGGTTGTGGGTGAATTGT
CGTTTGTTGTGGTGGTGCTTGCTTGGTTGATACTGCCGCTTGCTTCTGCT
GCTGCGTTTCATTTGTTTGTTTCCATCGTTTTTGTCTCTGCTGTTATTCT
GTTGGTTTTTGCTGTTGTTGTCGTCGTTGCCGCCGATGGCCGTTGCGTTG
CTGCTGTTGGTGCTTTGTGTTCTGCTGTTGGTGCCCTTGTGTTGTGAGGT
TTTGCTTGGCTTCCGCCTGATGAATTTTCTTTGGTGTTTTGACGTCCCCG
CGAGAGCAGTTCAACCCTAACCCGGGGCGACGAGGTGGTTGCCAAATGCC
AGCGACACCAAAAGTATGATGTGCAACGTCACACACCCAGGGCATCGTGT
TTTGAGTCGGACAGCGGTGCCTAGCCTCTCTCTTCAGTAGATATGGTACT
TCGTATACGTTAACCCCACACCACCGCCAGCCACGACAGACAACTGTGTG
GGTGCGACAGCTTCGTCAGACTGCTGTACCTAAAACGCAACACCCATGGC
CTACTGCTGTCTGGAGCATGACGTTGCCGCACCTCTCGAGAAAGGCATCC
CACGCCATCACCATAAAGAAGAAAAAAAACAAAACCTGCCCGCAGGGTTT
CCCCTGTGGAGTCGAAGGAGGCCGCAGACGACCAGGACGATGGAGACACC
TCAGGAGTGCGGGTGTTGCTGACCTCCCCGGACGCCTCGGAGGCCAAGGA
CCGGGAGGTGTGGGTCACTCCCGAGGAGGTGCTAGCGATGCTGCTCGCCG
GCGTTAAGGTGAGAAGGGGTGCCGGGGGGTGGGCGGGGGGCGGCGTACTC
TTATGTTTTGCATCCCTTAGTCGTTAGACAATTGTAGGGGGGCGGTGGGG
CGGGTGTACTCACAGTTGTGCATGCCGTAGTCGTTTGATCATTGGCCTCG
GGAGGCGAGGGGGGGCTGTTGTAGGTCCGGCAATACATAACGGTCGTAGT
AGGCCCTCTATCGGGCGGGTATGCACCAGACCGATTCACCCGCCGCCCTA
CACAGGGCACCCGCCTTATTCAATGTGTAGAACAATTATAATAGATAAAT
TCGTCTGTGCCAGCCTATTTTACCCGCCTTATATAGAGCACCCGCCTTAT
AGAGGGCCTACGATTGTACCTGCGTGACCTGAAAGGGAATGCCTTGATGC
CGTGATCATCATGCATGCGAAGGAACGGCTTGGTGAGAAAGATCTCGGGA
TGTTCGTGGGCATGATGCTAAGTCTTCCGGAGGAACCGGCTTTTCGAGAT
CGCGGCGGTTGGGTGATGCTTTACGTGTTTTGGGAAGCGTGCGAAAAGCA
AAGACGTTTAACGGATGTTGCACACGGATCCCCGGGGGGTGGGCGGTGGA
GTCGCTTAGTTCTTACAATGTACCCGTGGTCGATGTGAGAGAGAGCAAGT
GTCGAAGCCTGTACACCCCCCCGACACTTGGCACTCGGCGGCGGTGTAGC
CGATTCGTCATGTGACGGTTTGGGCGACTGACTGACTGCTGTATCCACCG
TGAAGTCGAACGAAGAACCATCAATGTCATCACCATCATCATGATCATCA
ACAAGAACAGCTACCACTTCTACAGTATCAACAAAATGATCACCATAAAA
AAAATCATAACCATCATCATCATCACCGCCACCGCCCCCGCCAGACCACC
ACAACGACCCTACAACTCAACAATAACCACATCGTCATCATCAACAATAT
CACCACCACCAACAACAACAAGAGCCTTCATGAGCGATCGTGCTACACAG
CCCTCCGACAAAAACACCACAACAACAACCTTCGATGATATCATGCCTTT
CTCTCATCCATTCCCAGGCGAAGGCCGAGGAGGCCCACGGCGTGATGATC
AAGACCTGCAACCTCAGCGTGCCCGGCTGCCTCGGCGACCTGCACCGCGT
CGCTCTTCAGCGGTCGGTCTTCCTGGCGGGCATGGTGCCCGGCCGCTTCG
TCGGATCGCCCCTAGCCGCCGCCGTGGGGTATCTCTGGGGAAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15691:630..2926-

>mRNA_E-fasciculatus_F_contig15691.3935.1 ID=mRNA_E-fasciculatus_F_contig15691.3935.1|Name=mRNA_E-fasciculatus_F_contig15691.3935.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1188bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15691:630..2926- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAGGTGGTTAAAGTCCCGGGCGGGAGGCGGCCCGGCCTCAGATGCTCC
CGCGAAGGGCGTCAAGTTGTTCCACGCCGTGGGAGGAGGGGGCGGGGGGG
GCAAGGGCAACAGCAGTGGCGGTAGCGGTAGCGCGGGTGCCGCTGACGAC
AAGGGGGCTGCGGTGGTGTGGCCGCTGCGCCTGCTGGCGCTGAGGGGGAA
GGGCACGGAGGCGACGCAGCGGGTGCAGTCCTCCCTCCGACACGACATCG
ACGAAGGTGGTTAAAGTCCCGGGCGGGAGGCGGCCCGGCCTCAGATGCTC
CCGCGAAGGGCGTCAAGTTGTTCCACGCCGTGGGAGGAGGGGGCGGGGGG
GGCAAGGGCAACAGCAGTGGCGGTAGCGGTAGCGCGGGTGCCGCTGACGA
CAAGGGGGCTGCGGTGGTGTGGCCGCTGCGCCTGCTGGCGCTGAGGGGGA
AGGGCACGGAGGCGACGCAGCGGGTGCAGTCCTCCCTCCGACACGACATC
GAGGTTTCCCCTGTGGAGTCGAAGGAGGCCGCAGACGACCAGGACGATGG
AGACACCTCAGGAGTGCGGGTGTTGCTGACCTCCCCGGACGCCTCGGAGG
CCAAGGACCGGGAGGTGTGGGTCACTCCCGAGGAGGTGCTAGCGATGCTG
CTCGCCGGCGTTAAGGGTTTCCCCTGTGGAGTCGAAGGAGGCCGCAGACG
ACCAGGACGATGGAGACACCTCAGGAGTGCGGGTGTTGCTGACCTCCCCG
GACGCCTCGGAGGCCAAGGACCGGGAGGTGTGGGTCACTCCCGAGGAGGT
GCTAGCGATGCTGCTCGCCGGCGTTAAGGCGAAGGCCGAGGAGGCCCACG
GCGTGATGATCAAGACCTGCAACCTCAGCGTGCCCGGCTGCCTCGGCGAC
CTGCACCGCGTCGCTCTTCAGCGGTCGGTCTTCCTGGCGGGCATGGTGCC
CGGCCGCTTCGTCGGATCGCCCCTAGCCGCCGCCGTGGGGTATCTCTGGG
GAAGGTGAGCGAAGGCCGAGGAGGCCCACGGCGTGATGATCAAGACCTGC
AACCTCAGCGTGCCCGGCTGCCTCGGCGACCTGCACCGCGTCGCTCTTCA
GCGGTCGGTCTTCCTGGCGGGCATGGTGCCCGGCCGCTTCGTCGGATCGC
CCCTAGCCGCCGCCGTGGGGTATCTCTGGGGAAGGTGA
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