prot_E-fasciculatus_F_contig1568.3933.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1568.3933.1
Unique Nameprot_E-fasciculatus_F_contig1568.3933.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length411
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1568.3933.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 561 bits (1447), Expect = 8.520e-198
Identity = 335/421 (79.57%), Postives = 346/421 (82.19%), Query Frame = 0 
Query:    1 MGSCSSRLQERRPHTAAVKRREGGLFREAWGKNEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPN-----NPFAVEAVCIAPERRASARTSEALVRRRARTRRPPPTAVFPAEILRSCVFGYLGSGCLQRASGACRVWRDAAVDEHLWKELCLRRWVGKHVALLEDCHHFYQQQQSEDGDEGETSEERQQ------LPPIELARSLSGGLEELVAAMPIKAMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWVMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVARDETSWGWRLVNAHVTFKQQRALPP 410
            MG CSSR QER  HTAAVK R+GGL  EAW KNEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                TP      NPFAVE V  +P+RRAS R S  LVRRR    R PPT  +P EILRSC+ G+LG+GCLQRASGACR WRDAAVDE LWKELCLRRWVGKHVALLEDCHHFYQQQ+                     L PIELARSLSGGLEELVAAMPIK MKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPW+MSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNH FVKVSNYPALEV RDE SWGWRL+NAHVTF+Q RALPP
Sbjct:    1 MGGCSSRFQERGTHTAAVKGRDGGLIGEAWNKNEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTRTQCPCCPRPTAATPTTATAPNPFAVEVV--SPQRRASGRASTVLVRRR----RHPPTG-YPDEILRSCILGFLGAGCLQRASGACRAWRDAAVDEQLWKELCLRRWVGKHVALLEDCHHFYQQQREXXXXXXXXXXXXXXXXXXXXLQPIELARSLSGGLEELVAAMPIKVMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHHFVKVSNYPALEVERDEKSWGWRLINAHVTFQQDRALPP 414
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BLAST of mRNA_E-fasciculatus_F_contig1568.3933.1 vs. uniprot
Match: D8LLT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.990e-36
Identity = 85/176 (48.30%), Postives = 94/176 (53.41%), Query Frame = 0 
Query:  237 MPIKAMKRRLHELGANPARLAACLEKDECVSL--MMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWVMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVARDETSWGWRLVNAHVTFKQQRALPP 410
            MPIK MKRRLHELGANPARLAACLEK   +        + L+ +GL  +   LP  L                            R   V    G   +A+                     GFHQDGLVWHFEDNHRFVKVSNYPALEV RDE SWGWRLVNAHVTFKQ+RA+PP
Sbjct:    1 MPIKVMKRRLHELGANPARLAACLEKGRPLEAEGTAAGVALAGEGLAVE---LPLLLQ--------------------------GRQAAVDDHGGPGKNAL--------------------DGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERAVPP 127
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1568.3933.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE8.520e-19879.57F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLT4_ECTSI1.990e-3648.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 119..209
e-value: 2.0E-7
score: 32.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 35..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..410
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 47..54
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..54
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 122..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1568contigE-fasciculatus_F_contig1568:2156..8541 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1568.3933.1mRNA_E-fasciculatus_F_contig1568.3933.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1568 2156..9223 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1568.3933.1 ID=prot_E-fasciculatus_F_contig1568.3933.1|Name=mRNA_E-fasciculatus_F_contig1568.3933.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=411bp
MGSCSSRLQERRPHTAAVKRREGGLFREAWGKNEAAAAAAAAAAAAAAVP
AAAAAAAPEALTVSSSSSTSSPTTRTQCPCCPRPATTPTPTTTTPNNPFA
VEAVCIAPERRASARTSEALVRRRARTRRPPPTAVFPAEILRSCVFGYLG
SGCLQRASGACRVWRDAAVDEHLWKELCLRRWVGKHVALLEDCHHFYQQQ
QSEDGDEGETSEERQQLPPIELARSLSGGLEELVAAMPIKAMKRRLHELG
ANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWS
FHFADKDAKRQWMTMEDLARTPWVMSFPGHVSSAVPPPPLLAVRCEFHRD
FTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVARDETSWGWRLVNAHV
TFKQQRALPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf