mRNA_E-fasciculatus_F_contig15675.3930.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15675.3930.1
Unique NamemRNA_E-fasciculatus_F_contig15675.3930.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15675.3930.1 vs. uniprot
Match: A0A836CLP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLP6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.570e-8
Identity = 85/278 (30.58%), Postives = 117/278 (42.09%), Query Frame = 1 
Query:   19 SSVTCKGL-GIEAKANNRVDERVVSALDSSRFVAEMDKGNGFTFEIW----ATFQDFSECPMCLSRHVASIGSRNEELVGEP------CSTTSNV-LFLQTNQSVAMKQRTSL-PDLTCS-TLESWPPV--VEWGFPVHAVFTTATTSLGVATSNTPERDFRTACWYLNG-----MLAGCDV-ELEQA------SLWHNEFYLQVLNDAVAVRSMDTTYAAP--------AGIVFLLAMYNRVLNDSEIVNNYDAGLENSPPVAEDIVVTINEDGEIG 744
            S++ C    GI A   NR   R+ S  DS+ F+  M    GFT E+W    A+F D    P      + SIG+  +   G        C   SN+ L    N   A+  R  L P + C+ T  S  P      G P H V T   + L   T +          +Y NG        G    EL  A      S W   + LQ+ +D     + D  +A P         G ++ +A+Y RVL  +E   NYDA + NSPPVA D+ VT++EDG +G
Sbjct:   62 SNLQCSAANGITAPDVNRDKVRMTSEFDSTAFLNAMTGKAGFTMELWLSHGASFND--NAPF---NTIMSIGTAVDVYQGPTVENNFYCEQNSNLELRYVANDFYAVLLRMELTPTVACTPTTTSSAPTDGAAPGVPQHVVITFDFSRLQPETGSYAVVPVN---YYFNGGDLNAAHGGVTAPELFHARFNGFNSTWVPGYKLQMYSDYRT--AADQMHAGPFSEMFTPWPGTMYSVALYPRVLTAAEAKGNYDAYVPNSPPVAADVNVTVDEDGMVG 329
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15675.3930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CLP6_9STRA7.570e-830.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15675contigE-fasciculatus_F_contig15675:1250..1996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-sdr_f_000170.1
Exons1
Model size748
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.590735-CDS-E-fasciculatus_F_contig15675:1249..19961622928040.590735-CDS-E-fasciculatus_F_contig15675:1249..1996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15675 1250..1996 +
1695995799.7734928-CDS-E-fasciculatus_F_contig15675:1249..19961695995799.7734928-CDS-E-fasciculatus_F_contig15675:1249..1996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15675 1250..1996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15675.3930.1prot_E-fasciculatus_F_contig15675.3930.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15675 1250..1996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15675.3930.1

>prot_E-fasciculatus_F_contig15675.3930.1 ID=prot_E-fasciculatus_F_contig15675.3930.1|Name=mRNA_E-fasciculatus_F_contig15675.3930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=249bp
DLVINTSSVTCKGLGIEAKANNRVDERVVSALDSSRFVAEMDKGNGFTFE
IWATFQDFSECPMCLSRHVASIGSRNEELVGEPCSTTSNVLFLQTNQSVA
MKQRTSLPDLTCSTLESWPPVVEWGFPVHAVFTTATTSLGVATSNTPERD
FRTACWYLNGMLAGCDVELEQASLWHNEFYLQVLNDAVAVRSMDTTYAAP
AGIVFLLAMYNRVLNDSEIVNNYDAGLENSPPVAEDIVVTINEDGEIGD
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mRNA from alignment at E-fasciculatus_F_contig15675:1250..1996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15675.3930.1 ID=mRNA_E-fasciculatus_F_contig15675.3930.1|Name=mRNA_E-fasciculatus_F_contig15675.3930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=747bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15675:1250..1996+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCTGGTGATCAATACATCGTCAGTAACTTGCAAAGGGTTGGGTATCGA
AGCCAAGGCGAACAATCGGGTCGACGAACGAGTTGTGTCGGCTTTGGATT
CCTCCCGGTTCGTGGCAGAGATGGACAAAGGGAATGGCTTCACGTTCGAG
ATCTGGGCAACGTTCCAGGATTTTTCTGAGTGCCCAATGTGCCTCAGCAG
ACATGTCGCATCCATCGGAAGCAGAAACGAGGAATTGGTCGGAGAACCAT
GTTCAACGACGTCAAATGTGCTTTTTCTCCAAACCAACCAATCGGTGGCG
ATGAAACAGCGGACCAGCTTGCCCGATTTAACGTGCAGTACGCTGGAATC
TTGGCCGCCTGTTGTGGAATGGGGCTTCCCTGTCCATGCCGTATTTACGA
CAGCCACCACCAGCCTGGGAGTAGCAACCAGCAACACGCCCGAGAGAGAT
TTTCGGACAGCATGTTGGTACCTGAATGGGATGCTGGCTGGCTGCGACGT
GGAATTAGAACAGGCCTCGCTATGGCACAACGAGTTCTATCTCCAAGTGC
TGAATGATGCAGTTGCAGTCAGATCGATGGACACCACCTATGCTGCGCCG
GCAGGAATTGTTTTTCTGTTGGCCATGTACAACCGTGTTCTCAACGATAG
CGAAATTGTGAACAACTACGACGCTGGTCTTGAAAATAGTCCTCCTGTCG
CCGAAGATATCGTAGTTACGATCAACGAGGATGGGGAAATAGGTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15675:1250..1996+

>mRNA_E-fasciculatus_F_contig15675.3930.1 ID=mRNA_E-fasciculatus_F_contig15675.3930.1|Name=mRNA_E-fasciculatus_F_contig15675.3930.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1494bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15675:1250..1996+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATCTGGTGATCAATACATCGTCAGTAACTTGCAAAGGGTTGGGTATCGA
AGCCAAGGCGAACAATCGGGTCGACGAACGAGTTGTGTCGGCTTTGGATT
CCTCCCGGTTCGTGGCAGAGATGGACAAAGGGAATGGCTTCACGTTCGAG
ATCTGGGCAACGTTCCAGGATTTTTCTGAGTGCCCAATGTGCCTCAGCAG
ACATGTCGCATCCATCGGAAGCAGAAACGAGGAATTGGTCGGAGAACCAT
GTTCAACGACGTCAAATGTGCTTTTTCTCCAAACCAACCAATCGGTGGCG
ATGAAACAGCGGACCAGCTTGCCCGATTTAACGTGCAGTACGCTGGAATC
TTGGCCGCCTGTTGTGGAATGGGGCTTCCCTGTCCATGCCGTATTTACGA
CAGCCACCACCAGCCTGGGAGTAGCAACCAGCAACACGCCCGAGAGAGAT
TTTCGGACAGCATGTTGGTACCTGAATGGGATGCTGGCTGGCTGCGACGT
GGAATTAGAACAGGCCTCGCTATGGCACAACGAGTTCTATCTCCAAGTGC
TGAATGATGCAGTTGCAGTCAGATCGATGGACACCACCTATGCTGCGCCG
GCAGGAATTGTTTTTCTGTTGGCCATGTACAACCGTGTTCTCAACGATAG
CGAAATTGTGAACAACTACGACGCTGGTCTTGAAAATAGTCCTCCTGTCG
CCGAAGATATCGTAGTTACGATCAACGAGGATGGGGAAATAGGTGACGAT
CTGGTGATCAATACATCGTCAGTAACTTGCAAAGGGTTGGGTATCGAAGC
CAAGGCGAACAATCGGGTCGACGAACGAGTTGTGTCGGCTTTGGATTCCT
CCCGGTTCGTGGCAGAGATGGACAAAGGGAATGGCTTCACGTTCGAGATC
TGGGCAACGTTCCAGGATTTTTCTGAGTGCCCAATGTGCCTCAGCAGACA
TGTCGCATCCATCGGAAGCAGAAACGAGGAATTGGTCGGAGAACCATGTT
CAACGACGTCAAATGTGCTTTTTCTCCAAACCAACCAATCGGTGGCGATG
AAACAGCGGACCAGCTTGCCCGATTTAACGTGCAGTACGCTGGAATCTTG
GCCGCCTGTTGTGGAATGGGGCTTCCCTGTCCATGCCGTATTTACGACAG
CCACCACCAGCCTGGGAGTAGCAACCAGCAACACGCCCGAGAGAGATTTT
CGGACAGCATGTTGGTACCTGAATGGGATGCTGGCTGGCTGCGACGTGGA
ATTAGAACAGGCCTCGCTATGGCACAACGAGTTCTATCTCCAAGTGCTGA
ATGATGCAGTTGCAGTCAGATCGATGGACACCACCTATGCTGCGCCGGCA
GGAATTGTTTTTCTGTTGGCCATGTACAACCGTGTTCTCAACGATAGCGA
AATTGTGAACAACTACGACGCTGGTCTTGAAAATAGTCCTCCTGTCGCCG
AAGATATCGTAGTTACGATCAACGAGGATGGGGAAATAGGTGAC
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