mRNA_E-fasciculatus_F_contig10490.393.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10490.393.1
Unique NamemRNA_E-fasciculatus_F_contig10490.393.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10490.393.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.780e-33
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 LPVAAAERAGRRTAXXXXXXXXGRELDFSDGYTAHRSTSTGGHQVTRHNVRYDPAFDGNPSGGVSLEGEGAPYGRGRAGGTGTGMR 258
            LPVAAAERAGR  A        GRELDFSDGYTAHR+TS+GG QVTRHNVRYDPA+DGNPSGGV  EGEGAPYGRGR G TGTG+R
Sbjct:  952 LPVAAAERAGRHMAGGSGAGAGGRELDFSDGYTAHRNTSSGGPQVTRHNVRYDPAYDGNPSGGVPFEGEGAPYGRGRGGVTGTGVR 1037
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10490.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN70_ECTSI1.780e-3377.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10490contigE-fasciculatus_F_contig10490:4247..4738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.2530384-CDS-E-fasciculatus_F_contig10490:4246..43961622927546.2530384-CDS-E-fasciculatus_F_contig10490:4246..4396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 4247..4396 +
1695995588.8286223-CDS-E-fasciculatus_F_contig10490:4246..43961695995588.8286223-CDS-E-fasciculatus_F_contig10490:4246..4396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 4247..4396 +
1622927546.263861-CDS-E-fasciculatus_F_contig10490:4629..47371622927546.263861-CDS-E-fasciculatus_F_contig10490:4629..4737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 4630..4737 +
1695995588.837947-CDS-E-fasciculatus_F_contig10490:4629..47371695995588.837947-CDS-E-fasciculatus_F_contig10490:4629..4737Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10490 4630..4737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10490.393.1prot_E-fasciculatus_F_contig10490.393.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10490 4247..4737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10490.393.1

>prot_E-fasciculatus_F_contig10490.393.1 ID=prot_E-fasciculatus_F_contig10490.393.1|Name=mRNA_E-fasciculatus_F_contig10490.393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
LPVAAAERAGRRTAGGSSAGGGGRELDFSDGYTAHRSTSTGGHQVTRHNV
RYDPAFDGNPSGGVSLEGEGAPYGRGRAGGTGTGMR
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mRNA from alignment at E-fasciculatus_F_contig10490:4247..4738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10490.393.1 ID=mRNA_E-fasciculatus_F_contig10490.393.1|Name=mRNA_E-fasciculatus_F_contig10490.393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:4247..4738+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCGGTGGCGGCGGCAGAACGGGCAGGGCGCCGGACAGCGGGGGGTAG
CAGCGCCGGCGGTGGCGGGAGAGAGCTGGATTTTTCGGACGGCTACACGG
CGCACAGGAGCACCTCAACCGGCGGCCACCAGGTCACGAGGCACAACGTG
GTGAGTGTACCCGTAGCGGCAGGGATAGGGATAGGGGGTTGGGCGAGGGG
GGACTCCGAGAAGAGGGACTTCAAGGAGGTCTGTCGCGTCCCACGATCGA
TTATTTTGTATCCTCGCTCATTTCTGCATCAATGCGGCACCTCGAGAACC
CTTCAACGGGAAGCTTGGAACGATACGCTCGAATGCGCATTTTTTCTAAA
AACACCCGCAATACTGCTCTCGTCTCGCGCCAGCGCTACGACCCCGCGTT
CGACGGAAACCCGAGTGGAGGCGTGTCCTTGGAGGGGGAAGGCGCCCCGT
ACGGACGAGGCAGGGCTGGCGGCACCGGCACCGGTATGCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10490:4247..4738+

>mRNA_E-fasciculatus_F_contig10490.393.1 ID=mRNA_E-fasciculatus_F_contig10490.393.1|Name=mRNA_E-fasciculatus_F_contig10490.393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10490:4247..4738+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCGGTGGCGGCGGCAGAACGGGCAGGGCGCCGGACAGCGGGGGGTAG
CAGCGCCGGCGGTGGCGGGAGAGAGCTGGATTTTTCGGACGGCTACACGG
CGCACAGGAGCACCTCAACCGGCGGCCACCAGGTCACGAGGCACAACGTG
CTGCCGGTGGCGGCGGCAGAACGGGCAGGGCGCCGGACAGCGGGGGGTAG
CAGCGCCGGCGGTGGCGGGAGAGAGCTGGATTTTTCGGACGGCTACACGG
CGCACAGGAGCACCTCAACCGGCGGCCACCAGGTCACGAGGCACAACGTG
CGCTACGACCCCGCGTTCGACGGAAACCCGAGTGGAGGCGTGTCCTTGGA
GGGGGAAGGCGCCCCGTACGGACGAGGCAGGGCTGGCGGCACCGGCACCG
GTATGCGGCGCTACGACCCCGCGTTCGACGGAAACCCGAGTGGAGGCGTG
TCCTTGGAGGGGGAAGGCGCCCCGTACGGACGAGGCAGGGCTGGCGGCAC
CGGCACCGGTATGCGG
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