mRNA_E-fasciculatus_F_contig15668.3927.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15668.3927.1
Unique NamemRNA_E-fasciculatus_F_contig15668.3927.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: D8LHG9_ECTSI (Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG9_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 4.800e-72
Identity = 125/137 (91.24%), Postives = 125/137 (91.24%), Query Frame = 1
Query:   13 ESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRG-EGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            ESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLER LELEPDFEACFYVRVTAADG GVLSAVGAIASEAGVSVHSVLRG EG     EEAG VS VVKTDSCLRS V AFVDGLKGKKVATADPVVMSIL
Sbjct:  298 ESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERPLELEPDFEACFYVRVTAADGLGVLSAVGAIASEAGVSVHSVLRGGEGXXXXXEEAGVVSLVVKTDSCLRSQVGAFVDGLKGKKVATADPVVMSIL 434          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: A0A7S2WAR1_9STRA (Homoserine dehydrogenase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAR1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.590e-29
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y GPGAGR+PTANSVV+D++R+A      T PPFPL+R L LEPD+ ACFYVR+T  D  G+++ +GAIA++AGVS+ SVL+         +   V FVV TD C RS V A  D +  +    + P+VM ++
Sbjct:  291 SSYVGPGAGRFPTANSVVSDVLRVAM---DTTTPPFPLQRTLPLEPDYSACFYVRITVKDQLGIIANIGAIAAKAGVSIFSVLQNP-----ITDPAKVDFVVTTDQCKRSQVQAVADEVSAQLFTVSPPLVMPMV 417          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: D7FNL8_ECTSI (Homoserine dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.090e-24
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 KKTAESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            K    + ++GPGAGRYPTANSVVNDIVRL   G  G+  PFP ++  ELE DF + FY+R+T +D  G++  VG +A+E GVS+H++L+        E+   V FVV TD C +S V      +  +K A   P+++++L
Sbjct:  362 KNMGTASFSGPGAGRYPTANSVVNDIVRLGT-GKVGS--PFPFDKEWELESDFTSAFYLRITCSDDLGIIQRVGELAAENGVSIHAILQNP-----IEDVDNVDFVVTTDPCKQSQVDELSSSIGQEKWAKGVPLILTLL 493          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: A0A7S1Z3Y2_TRICV (Homoserine dehydrogenase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3Y2_TRICV)

HSP 1 Score: 103 bits (256), Expect = 9.070e-24
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   22 YAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            Y GPGAGRYPTA+SVV D+ R+A       P PFPLE ++EL+ D+ + FYVR++ AD  G++  VG IA   GVS+HS+L+        ++ GA  FVV T++C  S V    + + G+  A   P+ M +L
Sbjct:  187 YTGPGAGRYPTASSVVADVRRIA--DGLCPPDPFPLESSIELDNDYTSNFYVRISFADSLGIVRRVGEIAERRGVSIHSILQNP-----IDDRGAADFVVTTEACKLSQVTGMCEDVAGEDFARGPPLCMPML 312          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: W7TUB9_9STRA (Homoserine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.470e-23
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y GPGAGRYPTANS+V+D+VRLAR G  G  PPFP++RA+ LEPD+ + FY+R+   D  GV+  VG IA   GVS++++L+         +   + FVV T+    S V AF D ++ +      P+  + L
Sbjct:  298 SSYIGPGAGRYPTANSIVSDLVRLAR-GLVG--PPFPVDRAMPLEPDYTSRFYIRLRIRDQLGVIRVVGEIAERHGVSIYAILQNP-----ISDPNDIHFVVTTEPARHSQVQAFADDIEKQDFTKGPPLFFAFL 424          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: A0A835ZAD6_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.400e-23
Identity = 58/133 (43.61%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   22 YAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            Y+GPGAGR+PTANSVV+DIVR+AR  A    PPFP ++    E DF   FY R+T  D  G++  VG +A E GVS+H++L+        E+   V FVV T+ C  S V +F   +  ++ A   P+ MS+L
Sbjct:  305 YSGPGAGRFPTANSVVSDIVRIARGMAT---PPFPYDKDWTFETDFTGEFYTRITCKDALGIIKRVGELAEENGVSIHAILQNP-----IEDRDNVDFVVTTEPCRLSQVESFCSSIAKERWAKNKPLCMSLL 429          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: G4YS84_PHYSP (Homoserine dehydrogenase n=2 Tax=Phytophthora TaxID=4783 RepID=G4YS84_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-21
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPP--PFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y GPGAGR+PTANSV+NDI++LAR    G  P  PF     L ++PD+EA FYVR+T  DG GV+  VG +A E+GVS++S+L+         +   V FVV T++ L S V +    +        +P+ + I+
Sbjct:  135 SAYVGPGAGRFPTANSVMNDIIQLAR----GDAPLDPFKASVPLTMQPDYEAHFYVRITITDGLGVIRHVGQLAEESGVSIYSILQAP-----IVDRANVQFVVTTETSLLSKVRSMCQKIAALPFVQEEPLYLPIM 262          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: A0A6A3HK13_9STRA (Homoserine dehydrogenase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HK13_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.900e-21
Identity = 58/137 (42.34%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPP--PFPLERALELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y GPGAGR+PTANSV+NDI++LAR    G  P  PF     + L+PD+EA FYVR+T  DG GV+  VG +A E+GVS++S+L+         +   V FVV T++ L S V A    +        +P+ + I+
Sbjct:  310 SAYVGPGAGRFPTANSVMNDIIQLAR----GDAPLDPFKASVPVTLQPDYEAHFYVRITITDGLGVIRHVGQLAEESGVSIYSILQAP-----IVDRANVQFVVTTETSLLSKVRAMCQKIAALPFVQEEPLYLPII 437          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: H3GCZ2_PHYRM (Homoserine dehydrogenase n=5 Tax=Phytophthora TaxID=4783 RepID=H3GCZ2_PHYRM)

HSP 1 Score: 96.3 bits (238), Expect = 1.190e-20
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERA--LELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y GPGAGR+PTANSV+NDI++LAR    G  P  PL+ +  L L+PD+EA FYVR+T  DG GV+  VG +A E+GVS++S+L+         +   V FVV T++ L S V +    +        +P+ + I+
Sbjct:  310 SAYVGPGAGRFPTANSVMNDIIQLAR----GDAPLDPLKASVPLTLQPDYEAHFYVRITITDGLGVIRHVGQLAEESGVSIYSILQAP-----IVDRANVQFVVTTETSLLSKVRSMCQKIAALPFVQEEPLYLPIM 437          
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Match: A0A662YB41_9STRA (Homoserine dehydrogenase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB41_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.190e-20
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   16 SVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERAL--ELEPDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEAGAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL 420
            S Y G GAGR+PTANSV+ND+++LAR    G  P  P + A+  +L+PD+EA FYVR+T ADG GV+ AVG +A E+GVS++S+L+         +   V FVV T++ L S V +    +        +P+ + I+
Sbjct:  310 SAYVGQGAGRFPTANSVMNDVIQLAR----GDAPSDPFKAAVPSKLQPDYEAHFYVRITIADGLGVIRAVGQLAEESGVSIYSILQAP-----IVDRTKVQFVVTTETSLLSSVRSMCQKIAALPFVKEEPLFLPIM 437          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15668.3927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHG9_ECTSI4.800e-7291.24Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2WAR1_9STRA1.590e-2948.15Homoserine dehydrogenase n=1 Tax=Rhizochromulina m... [more]
D7FNL8_ECTSI1.090e-2442.86Homoserine dehydrogenase n=1 Tax=Ectocarpus silicu... [more]
A0A7S1Z3Y2_TRICV9.070e-2442.86Homoserine dehydrogenase (Fragment) n=1 Tax=Triere... [more]
W7TUB9_9STRA4.470e-2342.96Homoserine dehydrogenase n=2 Tax=Monodopsidaceae T... [more]
A0A835ZAD6_9STRA6.400e-2343.61Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
G4YS84_PHYSP2.040e-2141.61Homoserine dehydrogenase n=2 Tax=Phytophthora TaxI... [more]
A0A6A3HK13_9STRA8.900e-2142.34Homoserine dehydrogenase n=2 Tax=Phytophthora TaxI... [more]
H3GCZ2_PHYRM1.190e-2042.34Homoserine dehydrogenase n=5 Tax=Phytophthora TaxI... [more]
A0A662YB41_9STRA1.190e-2041.61Homoserine dehydrogenase n=2 Tax=Nothophytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15668contigE-fasciculatus_F_contig15668:2513..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D7FNL8
EggNOG free text desc.Homoserine dehydrogenase
EggNOG OGs2QT5B@2759,COG0460@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHomoserine dehydrogenase
Ec32 orthologEc-11_004120.1
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.755886-CDS-E-fasciculatus_F_contig15668:2512..29351622928039.755886-CDS-E-fasciculatus_F_contig15668:2512..2935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15668 2513..2935 -
1695995799.4125283-CDS-E-fasciculatus_F_contig15668:2512..29351695995799.4125283-CDS-E-fasciculatus_F_contig15668:2512..2935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15668 2513..2935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15668.3927.1prot_E-fasciculatus_F_contig15668.3927.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15668 2513..2935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15668.3927.1

>prot_E-fasciculatus_F_contig15668.3927.1 ID=prot_E-fasciculatus_F_contig15668.3927.1|Name=mRNA_E-fasciculatus_F_contig15668.3927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
KKTAESVYAGPGAGRYPTANSVVNDIVRLARLGAAGTPPPFPLERALELE
PDFEACFYVRVTAADGRGVLSAVGAIASEAGVSVHSVLRGEGGGGGEEEA
GAVSFVVKTDSCLRSHVAAFVDGLKGKKVATADPVVMSIL*
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mRNA from alignment at E-fasciculatus_F_contig15668:2513..2935-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15668.3927.1 ID=mRNA_E-fasciculatus_F_contig15668.3927.1|Name=mRNA_E-fasciculatus_F_contig15668.3927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=423bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15668:2513..2935- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAAAACAGCCGAGAGCGTCTACGCCGGGCCAGGGGCGGGACGGTACCC CACCGCCAACTCTGTGGTGAACGACATCGTCCGCCTCGCGCGGCTAGGGG CGGCGGGCACCCCGCCCCCGTTCCCGTTGGAGCGGGCGCTGGAGTTGGAG CCCGACTTCGAGGCGTGTTTCTACGTGCGGGTGACGGCGGCGGACGGCCG CGGCGTGCTCTCGGCCGTCGGCGCGATCGCCTCCGAGGCCGGGGTCTCAG TACACTCCGTGCTTCGAGGGGAAGGGGGCGGCGGGGGAGAGGAGGAGGCG GGCGCGGTGAGCTTCGTGGTCAAGACGGACTCTTGCTTGCGGTCGCACGT GGCCGCGTTCGTGGACGGGCTCAAGGGGAAGAAGGTGGCGACGGCGGACC CGGTAGTCATGTCCATATTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15668:2513..2935-

>mRNA_E-fasciculatus_F_contig15668.3927.1 ID=mRNA_E-fasciculatus_F_contig15668.3927.1|Name=mRNA_E-fasciculatus_F_contig15668.3927.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15668:2513..2935- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAAAACAGCCGAGAGCGTCTACGCCGGGCCAGGGGCGGGACGGTACCC
CACCGCCAACTCTGTGGTGAACGACATCGTCCGCCTCGCGCGGCTAGGGG
CGGCGGGCACCCCGCCCCCGTTCCCGTTGGAGCGGGCGCTGGAGTTGGAG
CCCGACTTCGAGGCGTGTTTCTACGTGCGGGTGACGGCGGCGGACGGCCG
CGGCGTGCTCTCGGCCGTCGGCGCGATCGCCTCCGAGGCCGGGGTCTCAG
TACACTCCGTGCTTCGAGGGGAAGGGGGCGGCGGGGGAGAGGAGGAGGCG
GGCGCGGTGAGCTTCGTGGTCAAGACGGACTCTTGCTTGCGGTCGCACGT
GGCCGCGTTCGTGGACGGGCTCAAGGGGAAGAAGGTGGCGACGGCGGACC
CGGTAGTCATGTCCATATTGTGAAAAAAAACAGCCGAGAGCGTCTACGCC
GGGCCAGGGGCGGGACGGTACCCCACCGCCAACTCTGTGGTGAACGACAT
CGTCCGCCTCGCGCGGCTAGGGGCGGCGGGCACCCCGCCCCCGTTCCCGT
TGGAGCGGGCGCTGGAGTTGGAGCCCGACTTCGAGGCGTGTTTCTACGTG
CGGGTGACGGCGGCGGACGGCCGCGGCGTGCTCTCGGCCGTCGGCGCGAT
CGCCTCCGAGGCCGGGGTCTCAGTACACTCCGTGCTTCGAGGGGAAGGGG
GCGGCGGGGGAGAGGAGGAGGCGGGCGCGGTGAGCTTCGTGGTCAAGACG
GACTCTTGCTTGCGGTCGCACGTGGCCGCGTTCGTGGACGGGCTCAAGGG
GAAGAAGGTGGCGACGGCGGACCCGGTAGTCATGTCCATATTGTGA
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