mRNA_E-fasciculatus_F_contig15659.3924.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig15659.3924.1
Unique Name	mRNA_E-fasciculatus_F_contig15659.3924.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: D7FZX7_ECTSI (Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 5.470e-43
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            +AISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL
Sbjct:  198 KAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 268

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A2S8NBK0_9MYCO (Agmatinase (Fragment) n=1 Tax=Mycobacterium sp. ITM-2016-00317 TaxID=2099694 RepID=A0A2S8NBK0_9MYCO)

HSP 1 Score: 95.9 bits (237), Expect = 1.970e-24
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            QA+++  GPV+LVHFD+H DTWD YFG  CTHGTPF+RA +  LI    S HVGIRGS+ D +D++ DE+L
Sbjct:    1 QAVNELHGPVALVHFDAHLDTWDTYFGAPCTHGTPFRRASEQVLIVKGHSAHVGIRGSLYDAKDLLDDEEL 71

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A1G8M7E4_9BACI (Agmatinase n=1 Tax=Alteribacillus bidgolensis TaxID=930129 RepID=A0A1G8M7E4_9BACI)

HSP 1 Score: 100 bits (248), Expect = 9.900e-24
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            +A + K+GPV+LVHFDSH DTWD YFGEK  HGTPF+RA+++GLIDTS S+ VG+RG +   EDI   E+L
Sbjct:  130 RAFAKKYGPVALVHFDSHSDTWDNYFGEKYMHGTPFRRAVEEGLIDTSHSIQVGLRGPLYGPEDITDPEEL 200

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: UPI0019BDBEE6 (Agmatinase n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019BDBEE6)

HSP 1 Score: 100 bits (248), Expect = 1.000e-23
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            +A+ +  GPV+LVHFD+H DTWD YFG  CTHGTPF+RA ++GL+   RS HVGIRGS+ D  D++ DE+L
Sbjct:  143 RAVREAHGPVALVHFDAHLDTWDTYFGAPCTHGTPFRRASEEGLVVKGRSAHVGIRGSLYDRRDLLDDEEL 213

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A553KKL7_9BACL (Agmatinase n=6 Tax=Bacillales TaxID=1385 RepID=A0A553KKL7_9BACL)

HSP 1 Score: 99.0 bits (245), Expect = 2.600e-23
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDI 195
            +A + KFGPV+L+HFDSH DTWD YFGEK THGTPF+RA+++GLIDTS S+ VG+RG +   EDI
Sbjct:  132 RAFARKFGPVALIHFDSHGDTWDSYFGEKYTHGTPFRRAVEEGLIDTSHSIQVGMRGPLYGPEDI 196

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A6N4VBM8_9MYCO (Agmatinase n=2 Tax=Mycolicibacterium TaxID=1866885 RepID=A0A6N4VBM8_9MYCO)

HSP 1 Score: 99.0 bits (245), Expect = 2.630e-23
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            QA++   GPV+L+HFD+H DTWD YFG  CTHGTPF+RA + GL+   RS HVGIRGS+ D  D++ DE L
Sbjct:  142 QAVNQVHGPVALIHFDAHLDTWDTYFGAPCTHGTPFRRAAEQGLLVKDRSAHVGIRGSLYDRADLLEDEAL 212

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A1Q4HCR1_9MYCO (Agmatinase n=5 Tax=Mycobacterium diernhoferi TaxID=1801 RepID=A0A1Q4HCR1_9MYCO)

HSP 1 Score: 99.0 bits (245), Expect = 2.670e-23
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            QA++   GPV+LVHFD+H DTWD YFG  CTHGTPF+RA++ GL+   RS H+GIRGS+ D  D++ DE L
Sbjct:  143 QAMNRVHGPVALVHFDAHLDTWDTYFGAPCTHGTPFRRAVEQGLLVKDRSAHIGIRGSLYDRADLLDDESL 213

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BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A419V7N9_9BACL (Agmatinase n=1 Tax=Sinobaca qinghaiensis TaxID=342944 RepID=A0A419V7N9_9BACL)

HSP 1 Score: 98.6 bits (244), Expect = 3.320e-23
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            +A + K+GPV+L+HFDSH DTWD YFGEK  HGTPF+RA+++GLIDTSRS+ VG+RG +    D+   E L
Sbjct:  130 RAFAKKYGPVALIHFDSHSDTWDNYFGEKYMHGTPFRRAVEEGLIDTSRSIQVGLRGPLYGPHDVTDPEDL 200

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A6H0SFM0_9MYCO (Agmatinase n=6 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A6H0SFM0_9MYCO)

HSP 1 Score: 98.6 bits (244), Expect = 3.740e-23
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            QAI+   GPV+LVHFD+H DTWD YFG  CTHGTPF+RA + GL+   RS H+GIRGS+ D  D++ DE L
Sbjct:  143 QAINRVHGPVALVHFDAHLDTWDTYFGAPCTHGTPFRRAAEQGLLVKDRSAHIGIRGSLYDRADLLDDESL 213

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Match: A0A024Q8X4_9BACI (Guanidinobutyrase n=2 Tax=Bacillaceae TaxID=186817 RepID=A0A024Q8X4_9BACI)

HSP 1 Score: 98.6 bits (244), Expect = 3.850e-23
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1

Query:    1 QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRSMHVGIRGSVNDHEDIVADEQL 213
            +A + K+GPVSLVHFDSH DTWD YFGEK  HGTPF+RA+++GLIDT  S+ VG+RG +   EDI   E L
Sbjct:  130 RAFAAKYGPVSLVHFDSHSDTWDNYFGEKYMHGTPFRRAVEEGLIDTEHSIQVGLRGPLYGPEDITDPEDL 200

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig15659.3924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FZX7_ECTSI	5.470e-43	98.59	Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
A0A2S8NBK0_9MYCO	1.970e-24	59.15	Agmatinase (Fragment) n=1 Tax=Mycobacterium sp. IT...	[more]
A0A1G8M7E4_9BACI	9.900e-24	61.97	Agmatinase n=1 Tax=Alteribacillus bidgolensis TaxI...	[more]
UPI0019BDBEE6	1.000e-23	59.15	Agmatinase n=1 Tax=Rhodoferax sp. TaxID=50421 RepI...	[more]
A0A553KKL7_9BACL	2.600e-23	66.15	Agmatinase n=6 Tax=Bacillales TaxID=1385 RepID=A0A...	[more]
A0A6N4VBM8_9MYCO	2.630e-23	59.15	Agmatinase n=2 Tax=Mycolicibacterium TaxID=1866885...	[more]
A0A1Q4HCR1_9MYCO	2.670e-23	59.15	Agmatinase n=5 Tax=Mycobacterium diernhoferi TaxID...	[more]
A0A419V7N9_9BACL	3.320e-23	59.15	Agmatinase n=1 Tax=Sinobaca qinghaiensis TaxID=342...	[more]
A0A6H0SFM0_9MYCO	3.740e-23	60.56	Agmatinase n=6 Tax=Mycobacteriaceae TaxID=1762 Rep...	[more]
A0A024Q8X4_9BACI	3.850e-23	61.97	Guanidinobutyrase n=2 Tax=Bacillaceae TaxID=186817...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig15659	contig	E-fasciculatus_F_contig15659:960..1707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	154.8
Seed ortholog evalue	1.5e-35
Seed eggNOG ortholog	2880.D7FZX7
KEGG rclass	RC00024,RC00329
KEGG ko	ko:K01480
KEGG Reaction	R01157
KEGG Pathway	ko00330,ko01100,map00330,map01100
KEGG Module	M00133
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0009064,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019627,GO:0019752,GO:0030145,GO:0033388,GO:0034641,GO:0042401,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046872,GO:0046914,GO:0071704,GO:0071941,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.	agmatinase activity
EggNOG OGs	COG0010@1,KOG2964@2759
Ec32 ortholog description	agmatinase
Ec32 ortholog	Ec-22_003700.1
EC	3.5.3.11
COG Functional cat.	E
BiGG Reaction	iB21_1397.B21_02730,iECB_1328.ECB_02767,iECD_1391.ECD_02767
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Ec32 ortholog description	agmatinase, partial
Ec32 ortholog	Ec-17_004300.1
Exons	2
Model size	213
Cds size	213
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928039.2128189-CDS-E-fasciculatus_F_contig15659:959..1073	1622928039.2128189-CDS-E-fasciculatus_F_contig15659:959..1073	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15659 960..1073 +
1695995799.2253976-CDS-E-fasciculatus_F_contig15659:959..1073	1695995799.2253976-CDS-E-fasciculatus_F_contig15659:959..1073	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15659 960..1073 +
1622928039.2271488-CDS-E-fasciculatus_F_contig15659:1608..1707	1622928039.2271488-CDS-E-fasciculatus_F_contig15659:1608..1707	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15659 1609..1707 +
1695995799.241069-CDS-E-fasciculatus_F_contig15659:1608..1707	1695995799.241069-CDS-E-fasciculatus_F_contig15659:1608..1707	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig15659 1609..1707 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig15659.3924.1	prot_E-fasciculatus_F_contig15659.3924.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig15659 960..1707 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig15659:960..1707+
coding sequence from alignment at E-fasciculatus_F_contig15659:960..1707+

protein sequence of mRNA_E-fasciculatus_F_contig15659.3924.1

>prot_E-fasciculatus_F_contig15659.3924.1 ID=prot_E-fasciculatus_F_contig15659.3924.1|Name=mRNA_E-fasciculatus_F_contig15659.3924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
QAISDKFGPVSLVHFDSHFDTWDEYFGEKCTHGTPFKRAIDDGLIDTSRS
MHVGIRGSVNDHEDIVADEQL

mRNA from alignment at E-fasciculatus_F_contig15659:960..1707+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig15659.3924.1 ID=mRNA_E-fasciculatus_F_contig15659.3924.1|Name=mRNA_E-fasciculatus_F_contig15659.3924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=748bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15659:960..1707+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGATCAGCGACAAGTTCGGGCCGGTGTCTCTGGTGCACTTCGACAG
CCACTTCGACACGTGGGACGAGTACTTCGGGGAGAAGTGCACACACGGGA
CCCCCTTCAAGCGGGTGAACGAAAATAATGATTCATGTTTCGCCACCATG
AACGTATCACGATGAATGTGGCCGCTCCTATCATAATTGTAGTGCGATTC
GCGTGTGTCGATGTTGCACCATCATGGTCCTCTCGTTGTTGTCTTGTGCA
ATGCCAGCCACCTCTTTCATGATTGCAGCGCAGTGTGTCGTATTTCTTTG
AGCGGCTTGTTTAGCCGAGGATAGCGCCGCCGCGGTCTCTGCGTGCTGTT
ATGTTATGTTATGTTATGTTATGTTGCCTGCTGTGTTCCACCGGTTTCGT
GCATGCCGCAACCTTACGCAGAAGGTTCGCCTGCCTTACACGGAAGGTTG
ACCTGCCGTTCCTTTCGTTCATTTCTTTGTCCGCTACATGTCTGGAAGGT
TCACCTGCCGTTCCTTTGTTTATTGCTTTGTCCGCTACATGTCTGGAAGG
TCCACCTGCTATTCCTTTGTTAATTGGTTTGTCCGCTACATGTCTTGACA
CCCCGAAAATATCCCGCCCAACACCCCAAAACAACCCACTCGCGTGCAGG
CCATCGATGACGGGCTTATCGACACGTCGAGATCGATGCACGTGGGCATC
CGGGGATCGGTGAACGACCATGAAGACATCGTTGCCGACGAGCAGTTG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15659:960..1707+

>mRNA_E-fasciculatus_F_contig15659.3924.1 ID=mRNA_E-fasciculatus_F_contig15659.3924.1|Name=mRNA_E-fasciculatus_F_contig15659.3924.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15659:960..1707+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGATCAGCGACAAGTTCGGGCCGGTGTCTCTGGTGCACTTCGACAG
CCACTTCGACACGTGGGACGAGTACTTCGGGGAGAAGTGCACACACGGGA
CCCCCTTCAAGCGGCAGGCGATCAGCGACAAGTTCGGGCCGGTGTCTCTG
GTGCACTTCGACAGCCACTTCGACACGTGGGACGAGTACTTCGGGGAGAA
GTGCACACACGGGACCCCCTTCAAGCGGGCCATCGATGACGGGCTTATCG
ACACGTCGAGATCGATGCACGTGGGCATCCGGGGATCGGTGAACGACCAT
GAAGACATCGTTGCCGACGAGCAGTTGGCCATCGATGACGGGCTTATCGA
CACGTCGAGATCGATGCACGTGGGCATCCGGGGATCGGTGAACGACCATG
AAGACATCGTTGCCGACGAGCAGTTG