mRNA_E-fasciculatus_F_contig15650.3920.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15650.3920.1
Unique NamemRNA_E-fasciculatus_F_contig15650.3920.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15650.3920.1 vs. uniprot
Match: D8LJE0_ECTSI (Putative Del transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE0_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.880e-32
Identity = 79/108 (73.15%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 QQPSSDDDGKALPCLQTAVESMADPTSSGGSNEASVSAEF--VEAQLWTD-QQQPGA-GATRLVVGREGGGGNAGGVEGIPRAAGQPQRLQWGACEDASVGAPQRESP 312
            QQ  S DDG ALPCLQ AVE MA+PTSSG SNE +  A       Q WT  QQQPGA GAT  VVGREG GGNAGGVEG+PRAAGQPQRLQWGA EDASVG+PQRESP
Sbjct:  103 QQQPSPDDGTALPCLQAAVEDMANPTSSGNSNEGTNGAALGAQPQQQWTGGQQQPGAEGATPAVVGREGAGGNAGGVEGLPRAAGQPQRLQWGAREDASVGSPQRESP 210
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BLAST of mRNA_E-fasciculatus_F_contig15650.3920.1 vs. uniprot
Match: A0A6H5L5C3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.690e-30
Identity = 75/106 (70.75%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 QQPSSDDDGKALPCLQTAVESMADPTSSGGSNEASVSAEF--VEAQLWTDQQQPGAGATRLVVGREGGGGNAGGVEGIPRAAGQPQRLQWGACEDASVGAPQRESP 312
            QQPSSDD G ALPCLQ AVE MA PTSS  SNE +  A       Q WTD QQPGAGAT +VVG+EG GGNA GVEG+PRAAGQPQRLQ  A ED SVG+PQRESP
Sbjct:   99 QQPSSDD-GTALPCLQVAVEDMAKPTSSDNSNEGTNGAALGAQPLQQWTDPQQPGAGATPVVVGQEGAGGNADGVEGLPRAAGQPQRLQRRAREDTSVGSPQRESP 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15650.3920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE0_ECTSI1.880e-3273.15Putative Del transcription factor (Partial) (Fragm... [more]
A0A6H5L5C3_9PHAE2.690e-3070.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15650contigE-fasciculatus_F_contig15650:2471..2934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D8LJE0
KEGG koko:K09391
EggNOG free text desc.chorionic trophoblast cell differentiation
EggNOG OGsKOG2577@1,KOG2578@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDel EF2-like transcription factor
Ec32 orthologEc-17_001960.1
Exons1
Model size465
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.8958242-CDS-E-fasciculatus_F_contig15650:2470..29321622928038.8958242-CDS-E-fasciculatus_F_contig15650:2470..2932Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 2471..2932 +
1695995799.0815287-CDS-E-fasciculatus_F_contig15650:2470..29321695995799.0815287-CDS-E-fasciculatus_F_contig15650:2470..2932Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 2471..2932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15650.3920.1prot_E-fasciculatus_F_contig15650.3920.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15650 2471..2932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15650.3920.1

>prot_E-fasciculatus_F_contig15650.3920.1 ID=prot_E-fasciculatus_F_contig15650.3920.1|Name=mRNA_E-fasciculatus_F_contig15650.3920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=154bp
QQPSSDDDGKALPCLQTAVESMADPTSSGGSNEASVSAEFVEAQLWTDQQ
QPGAGATRLVVGREGGGGNAGGVEGIPRAAGQPQRLQWGACEDASVGAPQ
RESPPPSSLGGDKGGEARQQGANHHHGGGGGGGGRSAARGDEAGIAAGSP
PTFP
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mRNA from alignment at E-fasciculatus_F_contig15650:2471..2934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15650.3920.1 ID=mRNA_E-fasciculatus_F_contig15650.3920.1|Name=mRNA_E-fasciculatus_F_contig15650.3920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15650:2471..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAGCCGTCATCAGACGACGATGGCAAGGCCTTACCATGCCTGCAGAC
GGCGGTAGAAAGCATGGCCGACCCAACCTCCTCCGGTGGCAGCAACGAAG
CAAGCGTGTCGGCGGAGTTTGTCGAGGCGCAGCTGTGGACGGATCAGCAG
CAGCCGGGGGCGGGCGCGACACGGCTGGTTGTCGGCCGGGAGGGGGGCGG
CGGTAACGCCGGCGGCGTGGAGGGGATCCCGCGGGCGGCGGGGCAGCCGC
AACGCCTGCAGTGGGGGGCGTGCGAGGACGCCTCCGTTGGTGCTCCGCAG
AGGGAGTCCCCGCCGCCGTCGTCTCTCGGCGGCGACAAGGGCGGGGAAGC
CCGCCAGCAAGGCGCCAACCACCACCACGGCGGCGGCGGCGGCGGCGGTG
GCAGGAGCGCCGCGCGAGGCGATGAAGCAGGTATTGCGGCCGGCTCGCCG
CCGACCTTCCCGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15650:2471..2934+

>mRNA_E-fasciculatus_F_contig15650.3920.1 ID=mRNA_E-fasciculatus_F_contig15650.3920.1|Name=mRNA_E-fasciculatus_F_contig15650.3920.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15650:2471..2934+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAGCCGTCATCAGACGACGATGGCAAGGCCTTACCATGCCTGCAGAC
GGCGGTAGAAAGCATGGCCGACCCAACCTCCTCCGGTGGCAGCAACGAAG
CAAGCGTGTCGGCGGAGTTTGTCGAGGCGCAGCTGTGGACGGATCAGCAG
CAGCCGGGGGCGGGCGCGACACGGCTGGTTGTCGGCCGGGAGGGGGGCGG
CGGTAACGCCGGCGGCGTGGAGGGGATCCCGCGGGCGGCGGGGCAGCCGC
AACGCCTGCAGTGGGGGGCGTGCGAGGACGCCTCCGTTGGTGCTCCGCAG
AGGGAGTCCCCGCCGCCGTCGTCTCTCGGCGGCGACAAGGGCGGGGAAGC
CCGCCAGCAAGGCGCCAACCACCACCACGGCGGCGGCGGCGGCGGCGGTG
GCAGGAGCGCCGCGCGAGGCGATGAAGCAGGTATTGCGGCCGGCTCGCCG
CCGACCTTCCCGCAACAGCCGTCATCAGACGACGATGGCAAGGCCTTACC
ATGCCTGCAGACGGCGGTAGAAAGCATGGCCGACCCAACCTCCTCCGGTG
GCAGCAACGAAGCAAGCGTGTCGGCGGAGTTTGTCGAGGCGCAGCTGTGG
ACGGATCAGCAGCAGCCGGGGGCGGGCGCGACACGGCTGGTTGTCGGCCG
GGAGGGGGGCGGCGGTAACGCCGGCGGCGTGGAGGGGATCCCGCGGGCGG
CGGGGCAGCCGCAACGCCTGCAGTGGGGGGCGTGCGAGGACGCCTCCGTT
GGTGCTCCGCAGAGGGAGTCCCCGCCGCCGTCGTCTCTCGGCGGCGACAA
GGGCGGGGAAGCCCGCCAGCAAGGCGCCAACCACCACCACGGCGGCGGCG
GCGGCGGCGGTGGCAGGAGCGCCGCGCGAGGCGATGAAGCAGGTATTGCG
GCCGGCTCGCCGCCGACCTTCCCG
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