mRNA_E-fasciculatus_F_contig15650.3919.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15650.3919.1
Unique NamemRNA_E-fasciculatus_F_contig15650.3919.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15650.3919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15650contigE-fasciculatus_F_contig15650:356..1808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928038.8197215-CDS-E-fasciculatus_F_contig15650:355..6781622928038.8197215-CDS-E-fasciculatus_F_contig15650:355..678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 356..678 +
1695995799.0616333-CDS-E-fasciculatus_F_contig15650:355..6781695995799.0616333-CDS-E-fasciculatus_F_contig15650:355..678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 356..678 +
1622928038.8333263-CDS-E-fasciculatus_F_contig15650:1726..18081622928038.8333263-CDS-E-fasciculatus_F_contig15650:1726..1808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 1727..1808 +
1695995799.0712085-CDS-E-fasciculatus_F_contig15650:1726..18081695995799.0712085-CDS-E-fasciculatus_F_contig15650:1726..1808Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15650 1727..1808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15650.3919.1prot_E-fasciculatus_F_contig15650.3919.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15650 356..1808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15650.3919.1

>prot_E-fasciculatus_F_contig15650.3919.1 ID=prot_E-fasciculatus_F_contig15650.3919.1|Name=mRNA_E-fasciculatus_F_contig15650.3919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
CRTQTSHTRAQRPSCERSVIEFSAAQHDGAHPLLAALLGNREAAATLRLL
RESPLYCHASKLKSSSASFPSTNCAKAAGRHKIEATERARAIELQWICLP
ERRQCLQRCLSRRPRRHQYRASQHTGAPMLATRG*
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mRNA from alignment at E-fasciculatus_F_contig15650:356..1808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15650.3919.1 ID=mRNA_E-fasciculatus_F_contig15650.3919.1|Name=mRNA_E-fasciculatus_F_contig15650.3919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1453bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15650:356..1808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCCGCACACAAACAAGCCACACGCGTGCGCAAAGACCCAGTTGCGAGCG
TAGTGTGATTGAGTTCTCCGCAGCACAGCACGACGGAGCGCATCCTCTCC
TGGCGGCACTGCTGGGGAACCGTGAAGCTGCTGCTACTCTACGCCTTCTT
CGCGAAAGCCCACTCTATTGCCACGCATCGAAGTTGAAATCATCATCAGC
CTCTTTTCCGTCAACAAACTGCGCGAAAGCAGCAGGACGACACAAGATTG
AAGCGACAGAGAGGGCCAGGGCCATCGAGTTGCAATGGATCTGTCTCCCA
GAGAGGAGGCAGTGCTTGCAAAGGTAAGGGTTCGATGTATAAGAGCATGC
GTTGTGTGGATGGCCGATGTGACTCTTGGTGTGTGTCGTCATGTGCGGCT
CTCCCAGGAAAATGAAAATTTGAAATGTTTTCGCACAGGAGTAAAAAAAA
ACGCGCGAAGCTCGCCGGTCCTCTCTGGTGCGCGCAAAATTGTCAACGAC
AGCCGAGAGAGGCGATCATCACGCACAGAATGGACAAGGAGAGTGGAAGA
GAGAAGCACTAGACTGCTGTGTCGAAGTAGTTGGCCGTCTCCTTGCGAAA
GAAGTAGGGCGGTACTGGCTCTCCCTCCCTCTCATGAGCCAAGAGAGCAA
CTGCTGGGACAGGTCTGTCGTATGCATTTATTTGAATATCTTGAGAGCGA
CCTCCAGGCATCCCTGCATACTGCTGCTGCACAACCGCGCAACGGATGCC
GCACTTCTCTACAGATAGCTTGGCCTGGCGTACACACTATCCTCAGCTGC
ACAGAAAGTGGCCTGGGCCGCACGCAGCATGTTGCCTGTGTTGTGTTGCT
CTTTTTAATGCAATTTCGTGTCTTCCCTCGCCGGCGCCATTTTAAGGCTT
GGGTGTGCAGCAGACGTGTGCGCACCAAGAGTTTTCTTCCCCCTCCCCGA
AAACCTTGGTGCACCTGCTGTAAGGGAAAGCACGCTGCACCGCAGTCGCA
AAACAGGCGTTGCTGTGGCGTTACGCTGGTGTCGAGTCGGGGGTAGTTTG
AACTCTTTGCATCTTGCTGCTCCCACGGCAGTGCTTTTTGCGGGATCCCT
AAAACCTGCAACCATTTTGTTTTTTTTCAAATTCCGGCGACGCGGCCGGC
CCGTTCCGTTTGTTGCCCTGTAGCCACGCGGCCCAGCTCTACTCTACTGC
CTGTAGTGCTCTCTGTGCCTTCATCTTGCAGTCGACATGCCGGCAGACTT
AACTTTGGCACCTGTTGTGATTCTTTTTTAGATATAAAGTGTTTTGTTCG
TGCGATACACCCCCCCCCTTGATTTCCTCTCTCAACGCCATCGCGGCTGC
TGCTGGCTGTCGTGCACACAGGTGTCTTTCGCGGAGACCACGACGACACC
AGTATCGGGCATCGCAGCACACGGGCGCGCCCATGCTTGCCACCCGAGGT
TAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15650:356..1808+

>mRNA_E-fasciculatus_F_contig15650.3919.1 ID=mRNA_E-fasciculatus_F_contig15650.3919.1|Name=mRNA_E-fasciculatus_F_contig15650.3919.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15650:356..1808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGCCGCACACAAACAAGCCACACGCGTGCGCAAAGACCCAGTTGCGAGCG
TAGTGTGATTGAGTTCTCCGCAGCACAGCACGACGGAGCGCATCCTCTCC
TGGCGGCACTGCTGGGGAACCGTGAAGCTGCTGCTACTCTACGCCTTCTT
CGCGAAAGCCCACTCTATTGCCACGCATCGAAGTTGAAATCATCATCAGC
CTCTTTTCCGTCAACAAACTGCGCGAAAGCAGCAGGACGACACAAGATTG
AAGCGACAGAGAGGGCCAGGGCCATCGAGTTGCAATGGATCTGTCTCCCA
GAGAGGAGGCAGTGCTTGCAAAGTGCCGCACACAAACAAGCCACACGCGT
GCGCAAAGACCCAGTTGCGAGCGTAGTGTGATTGAGTTCTCCGCAGCACA
GCACGACGGAGCGCATCCTCTCCTGGCGGCACTGCTGGGGAACCGTGAAG
CTGCTGCTACTCTACGCCTTCTTCGCGAAAGCCCACTCTATTGCCACGCA
TCGAAGTTGAAATCATCATCAGCCTCTTTTCCGTCAACAAACTGCGCGAA
AGCAGCAGGACGACACAAGATTGAAGCGACAGAGAGGGCCAGGGCCATCG
AGTTGCAATGGATCTGTCTCCCAGAGAGGAGGCAGTGCTTGCAAAGGTGT
CTTTCGCGGAGACCACGACGACACCAGTATCGGGCATCGCAGCACACGGG
CGCGCCCATGCTTGCCACCCGAGGTTAAGTGTCTTTCGCGGAGACCACGA
CGACACCAGTATCGGGCATCGCAGCACACGGGCGCGCCCATGCTTGCCAC
CCGAGGTTAA
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