prot_E-fasciculatus_F_contig15633.3909.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15633.3909.1
Unique Nameprot_E-fasciculatus_F_contig15633.3909.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length103
Homology
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 8.600e-57
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0
Query:    1 EGVQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPSPFQGLTGDTAPGAAPSMNRQ 103
            EGVQRAEGLIKFMTPEERRTPKLLILDPTS ARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGP GQPSPFQGL GDTAPGAAPSMNRQ
Sbjct:  434 EGVQRAEGLIKFMTPEERRTPKLLILDPTSQARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPGGQPSPFQGLGGDTAPGAAPSMNRQ 536          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A5C9BAS4_9BACT (Signal recognition particle protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A5C9BAS4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.360e-6
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGK 67
            +QR EG+I  MTPEERR P++L      A+R RRIA  AGV++  V+  L +F+  Q  M  MGK
Sbjct:  372 MQRIEGIINSMTPEERRRPEIL-----KASRKRRIAAGAGVQVQDVNRLLNQFEQAQKMMKSMGK 431          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A2SKT4_METPP (Signal recognition particle protein n=7 Tax=Methylibium TaxID=316612 RepID=A2SKT4_METPP)

HSP 1 Score: 53.1 bits (126), Expect = 6.450e-6
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 65
            V+R EG+I+ MTP ERR P+LL      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  378 VRRMEGIIRSMTPLERRKPELL-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 435          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A5C5ZTI1_9BACT (Signal recognition particle protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZTI1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.510e-6
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM-GKQMAD 71
            ++R +G+I  MTPEERRTPK++      A+R RRIA  +GV+   +   +K+F+ MQ  M+ M GK M D
Sbjct:  373 LKRLQGVIHSMTPEERRTPKII-----DASRRRRIAAGSGVEPHVIGDLVKQFEPMQQMMTAMAGKGMGD 437          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 52.8 bits (125), Expect = 8.850e-6
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPS 83
            ++ A+ LIK MT +ER  P+LL    ++ +R  RI++ AG         +K+F  M+  MSRM KQM +G    G  GQP+
Sbjct:  372 LKLADSLIKSMTVKERTNPELLYSGGSARSRILRISKGAGRSRDDAEDLVKDFLKMRDMMSRMSKQMVNGQGGPGGSGQPA 452          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A059KHF7_9BURK (Signal recognition particle protein n=5 Tax=Sphaerotilus TaxID=34102 RepID=A0A059KHF7_9BURK)

HSP 1 Score: 52.4 bits (124), Expect = 1.200e-5
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 65
            V+R EG+I+ MTP ERR P+L+      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  363 VRRMEGIIRSMTPLERRKPELI-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 420          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A4Q7VGB3_9BURK (Signal recognition particle protein n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VGB3_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 65
            ++R EG+I+ MTP ERR P+LL      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  387 MRRMEGIIRSMTPLERRKPELL-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 444          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A2E0Z7S1_9CHLR (Signal recognition particle protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0Z7S1_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-5
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGK 67
            ++R E +I+ MTP+ERR PK+L      A+R RR+A  +G  +  V+A LK+FQ M+  M ++ K
Sbjct:  370 LKRIEAIIRSMTPQERRNPKIL-----KASRKRRVAAGSGTTVQDVNALLKQFQEMKKMMKQLTK 429          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A0S8K7A5_9CHLR (Signal recognition particle protein n=1 Tax=Anaerolineae bacterium SM23_84 TaxID=1703388 RepID=A0A0S8K7A5_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 4.160e-5
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADG 72
            ++R E +I+ MTPEERR P+++     S +R RRIAR +G  +S ++  L +F+ MQ    R+ KQ++ G
Sbjct:  370 MKRTEAIIRSMTPEERRNPRII-----SGSRKRRIARGSGTSVSEINQLLNQFRQMQ----RLMKQLSSG 430          
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A1E4IDX8_9BURK (Signal recognition particle protein n=1 Tax=Rubrivivax sp. SCN 71-131 TaxID=1660138 RepID=A0A1E4IDX8_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 4.180e-5
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    3 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 65
            V+R EG+I+ MTP ERR P+L+      A+R RRIA  AGV++  V+  L +F  MQ  M +M
Sbjct:  373 VRRMEGIIRSMTPLERRKPELI-----KASRKRRIASGAGVQVQEVNRLLNQFGQMQGMMKKM 430          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LN22_ECTSI8.600e-5797.09PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A5C9BAS4_9BACT1.360e-647.69Signal recognition particle protein n=1 Tax=bacter... [more]
A2SKT4_METPP6.450e-647.62Signal recognition particle protein n=7 Tax=Methyl... [more]
A0A5C5ZTI1_9BACT6.510e-644.29Signal recognition particle protein n=1 Tax=Pseudo... [more]
A0A2V3IRY4_9FLOR8.850e-638.27Signal recognition particle protein n=1 Tax=Gracil... [more]
A0A059KHF7_9BURK1.200e-546.03Signal recognition particle protein n=5 Tax=Sphaer... [more]
A0A4Q7VGB3_9BURK1.650e-546.03Signal recognition particle protein n=1 Tax=Riviba... [more]
A0A2E0Z7S1_9CHLR3.050e-541.54Signal recognition particle protein n=1 Tax=Anaero... [more]
A0A0S8K7A5_9CHLR4.160e-540.00Signal recognition particle protein n=1 Tax=Anaero... [more]
A0A1E4IDX8_9BURK4.180e-546.03Signal recognition particle protein n=1 Tax=Rubriv... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 3..62
e-value: 8.7E-11
score: 42.3
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 1..80
e-value: 2.7E-17
score: 64.6
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 4..62
IPR004780Signal recognition particle proteinPANTHERPTHR11564:SF7SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTICcoord: 3..74
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 3..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15633contigE-fasciculatus_F_contig15633:1127..2620 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15633.3909.1mRNA_E-fasciculatus_F_contig15633.3909.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15633 1127..2620 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15633.3909.1 ID=prot_E-fasciculatus_F_contig15633.3909.1|Name=mRNA_E-fasciculatus_F_contig15633.3909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
EGVQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSA
FLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPSPFQGLTGDTAPGAAPSM
NRQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022941SRP54
IPR004780SRP
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M