mRNA_E-fasciculatus_F_contig15627.3904.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15627.3904.1
Unique NamemRNA_E-fasciculatus_F_contig15627.3904.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15627.3904.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 6.940e-72
Identity = 195/292 (66.78%), Postives = 212/292 (72.60%), Query Frame = 1 
Query:    1 SCGDVLRHL-EGASGAEGSPHGQSVVSGTGAGTGAELGGQASIRSVPFPTGGATPIARNSSTAARGAAVAPVQELVPASEATTTAAATVA----ARGDISTIVTEPGLQILPKRKKAEEQEEER--LDEGGVRSAPRGVRTPKRRKTAT-GGPVDSGKCSAGARNTSGNNGRISSSGDSGGGREGTVXXXXXXXXXXXXXXXXXAGRRKRRTSPSSMFRGRVFVVHGTGLEKEEEARMADLVTRHGGRCLDPSASSAPLLRQSLLSAGVELTPAAAAXXXXXXXXXPPCEEE 852
            SCGD LR L +GA GA GS H +SVVSGTG   GA++GGQA IR+ PFP G ATP A +SS AAR AA A VQELV ASEA  T+AA  A    AR DI TIVT+     +PKRKK+EE+      LDE G R APRG RTPKRR+T T GGPVDSGKCSAG  +TSGN+GRIS+S D     EG V XXXXXXXXXXXXXXX   RRKRR   SSMFRGRVFVVHGTGL KEEEARMA LV RHGGRCLDPSAS+  LLR+SLLSAGVELT AAA          PPCEEE
Sbjct:  400 SCGDGLRDLTKGAKGAAGSLHDRSVVSGTGVSAGAKVGGQAGIRNAPFPAGEATPTAWDSS-AARAAA-ASVQELVSASEAIPTSAAKAAPAPSARDDILTIVTDTPCPGIPKRKKSEEKXXXXXXLDEDGARPAPRGPRTPKRRRTTTLGGPVDSGKCSAGGGSTSGNSGRISTSSDXXXXXEGAVRXXXXXXXXXXXXXXX---RRKRRQPSSSMFRGRVFVVHGTGLGKEEEARMAGLVARHGGRCLDPSASTPSLLRRSLLSAGVELTSAAAPAAAPFA---PPCEEE 683
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BLAST of mRNA_E-fasciculatus_F_contig15627.3904.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.150e-70
Identity = 181/292 (61.99%), Postives = 196/292 (67.12%), Query Frame = 1 
Query:    1 SCGDVLRHL-EGASGAEGSPHGQSVVSGTGAGTGAELGGQASIRSVPFPTGGATPIARNSSTAARGAAVAPVQELVPASEATTTAAATVA----ARGDISTIVTEPGLQILPKRKKAEEQEEER--LDEGGVRSAPRGVRTPKRRKTAT-GGPVDSGKCSAGARNTSGNNGRISSSGDSGGGREGTVXXXXXXXXXXXXXXXXXAGRRKRRTSPSSMFRGRVFVVHGTGLEKEEEARMADLVTRHGGRCLDPSASSAPLLRQSLLSAGVELTPAAAAXXXXXXXXXPPCEEE 852
            SCGD L+ L +GA GA GS H +SVVSGTG   GAE GGQA IR+ PF  GGATP A  SS AA G A  PVQEL PASEA TT+AA  A    ARG+ISTIV EP     PKR+KA         LDE G R APRG RTPKR++T T GGPVDSGKCSAG  +TSGN+GRIS+SG         V         XXXXXXX   R KRR S SSMFRGRVFV+HGTGLEKEEE RMA LV RHGGRCLDP ASS  LLRQSLLSAGVELT  +AA         P C+EE
Sbjct:  518 SCGDGLQGLTKGAKGAAGSLHDRSVVSGTGVSAGAEDGGQAGIRNAPFRAGGATPTASGSSAAAGGVAAVPVQELAPASEAITTSAAKAAPAPSARGEISTIVPEPSGPGFPKRRKAXXXXXXXXXLDEDGARPAPRGCRTPKRQRTRTVGGPVDSGKCSAGGGSTSGNSGRISTSGXXXXXXXXAVRRSSSGNRRXXXXXXX---RSKRRQSLSSMFRGRVFVLHGTGLEKEEEVRMAGLVARHGGRCLDPCASSPSLLRQSLLSAGVELT--SAASPAAAPLLAPHCQEE 804
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15627.3904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G795_ECTSI6.940e-7266.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJL2_9PHAE1.150e-7061.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15627contigE-fasciculatus_F_contig15627:4..2012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.2
Seed ortholog evalue2.2e-66
Seed eggNOG ortholog2880.D7G795
KEGG koko:K03507,ko:K10728
KEGG Pathwayko03440,map03440
EggNOG free text desc.protein localization to site of double-strand break
EggNOG OGsKOG1929@1,KOG1929@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size854
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.2078125-CDS-E-fasciculatus_F_contig15627:3..7101622928037.2078125-CDS-E-fasciculatus_F_contig15627:3..710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15627 4..710 +
1695995798.1703873-CDS-E-fasciculatus_F_contig15627:3..7101695995798.1703873-CDS-E-fasciculatus_F_contig15627:3..710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15627 4..710 +
1622928037.2218442-CDS-E-fasciculatus_F_contig15627:1867..20121622928037.2218442-CDS-E-fasciculatus_F_contig15627:1867..2012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15627 1868..2012 +
1695995798.193707-CDS-E-fasciculatus_F_contig15627:1867..20121695995798.193707-CDS-E-fasciculatus_F_contig15627:1867..2012Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15627 1868..2012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15627.3904.1prot_E-fasciculatus_F_contig15627.3904.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15627 4..2012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15627.3904.1

>prot_E-fasciculatus_F_contig15627.3904.1 ID=prot_E-fasciculatus_F_contig15627.3904.1|Name=mRNA_E-fasciculatus_F_contig15627.3904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=284bp
SCGDVLRHLEGASGAEGSPHGQSVVSGTGAGTGAELGGQASIRSVPFPTG
GATPIARNSSTAARGAAVAPVQELVPASEATTTAAATVAARGDISTIVTE
PGLQILPKRKKAEEQEEERLDEGGVRSAPRGVRTPKRRKTATGGPVDSGK
CSAGARNTSGNNGRISSSGDSGGGREGTVRGSSDGNRRSDGSGEGGAGRR
KRRTSPSSMFRGRVFVVHGTGLEKEEEARMADLVTRHGGRCLDPSASSAP
LLRQSLLSAGVELTPAAAAAAAPAAPLAPPCEEE
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mRNA from alignment at E-fasciculatus_F_contig15627:4..2012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15627.3904.1 ID=mRNA_E-fasciculatus_F_contig15627.3904.1|Name=mRNA_E-fasciculatus_F_contig15627.3904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2009bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15627:4..2012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTTGCGGCGATGTTTTGCGACACTTAGAGGGGGCGAGTGGCGCTGAAGG
ATCGCCGCACGGTCAGAGCGTTGTGAGTGGCACAGGTGCCGGTACCGGCG
CCGAACTCGGAGGTCAGGCTAGTATTAGGAGTGTGCCTTTCCCAACGGGG
GGAGCGACGCCAATCGCAAGGAACTCGTCCACAGCAGCGCGGGGGGCGGC
GGTTGCGCCAGTCCAAGAGCTCGTACCTGCATCGGAAGCAACAACAACCG
CCGCGGCGACAGTGGCAGCGAGAGGTGACATATCGACCATCGTGACCGAG
CCAGGCTTGCAGATTTTACCCAAGCGGAAAAAAGCCGAGGAGCAGGAAGA
GGAGAGGCTGGACGAAGGCGGCGTAAGGTCTGCACCGCGAGGGGTTAGAA
CACCAAAGCGACGGAAGACGGCAACAGGAGGCCCTGTTGACAGCGGCAAG
TGTTCGGCCGGCGCGAGAAATACTAGCGGTAACAACGGGAGAATCAGCAG
CAGCGGCGATAGCGGCGGCGGGCGGGAGGGTACAGTCCGGGGGAGTAGCG
ACGGTAACCGGAGAAGCGACGGGAGCGGTGAGGGTGGTGCCGGTCGCAGG
AAGCGCCGGACGTCTCCGTCGTCGATGTTCCGCGGGCGAGTATTCGTCGT
TCATGGAACCGGGCTAGAGAAGGAAGAGGAAGCGAGGATGGCGGATCTCG
TAACAAGGTGTGTTCCTATCCACCCTTTGTTAGTGTTGGCCAACCGGTGG
GTCGCCTCTTGTCGTTTGTAGCAGCTACACCGATGCAGTCTATGGCTCTG
ATTTGGAGGGTGTTGTGACAAAGGCCCTCGACCCTCGCATGTAGGAGCCC
CCCTCGTTTACCGGACTAAGAGGTTACCCAAAGTTACAGCAGCGGGTTGA
GTCCGTGACAACCGGTTCCGACCCTGTGCCGTCTGTGGTATTTGTGTAGC
TGTCGCTCCTGGCGGCTGCCCCGACGTCCGGTGTTTGTGTACAAGTAGCG
GCCACGGACTGTGTCCCGCCTTTTGCTTGCTGCGGTGCGTGAAGGCAGGC
AGGCGGTGCTAGTAGGGGTGGGCGGAGTTTCCCAAGAGTACTGTAGTACG
ATATGACCAGGGACGTAAATATCTTAACTTTGACATCGAAATATGTACAC
TGAAAATGTATCGATTTTTGTAGGTTCCTTTTTAACAATGCTGCCGTGTT
CCTCGCTCAGTCGTCTCTTGGCTTCGGAACAAGAGGCTGAAGGCGCGCTC
AGGAGAGTCTTTTTGTGCTTGCTCCCTACAGTTGAAGCAGCCCCGCTCAG
AGCTCGCACAAAAAGCTCACGGCAATGACCACACACCCTCCATGTTGGTC
GCAGCCCCCATGCATCCCCTTGCATGAAGTATATGCATGTGTCTTCACAT
CCTTACGACACGTGCAGTCATGTTCGATTCATTTCTTGTGGAAAACAACG
ATCTGCACTTCTACCCAAGCGCTGTCACGATGTATGGGGTGTTTGGTGTG
ATGTATAACGAAATCACCATCCCCGATTGACGGCCTGTTGGTCCCCCAGA
AAACCACATTTCGTGCTCGTTTTTTTCCGTCTTGGCACATACATCCCACA
TCGGTCGTTCGTCTACAGTACTCTTTTTTTCATGTCCAGGGCTATGGTTG
CTCTCCAAGGGCGAAAACAAATCAAAAATAGTTGACGTGTGCTTCAGGAA
AATGCTACCCGAGAGGATCTCTCCTCTCACGTGATGTGGCGATATTTTCG
ATGCTTGTTCTTCGCATTGTCACTCTTAGAATCGTTTCCCTCTTTCCCAC
CACCAGCATCCCATGCGTTAGCCGACAACCACCCCACACCCCTTTCCCCT
TTCCCACGGATCAGGCACGGCGGGCGCTGCCTGGACCCGAGCGCCTCGTC
TGCGCCCCTCCTCCGGCAGTCTCTCCTCTCCGCCGGCGTCGAGCTTACGC
CCGCCGCCGCCGCCGCCGCCGCTCCAGCCGCCCCCTTAGCCCCCCCCTGC
GAGGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15627:4..2012+

>mRNA_E-fasciculatus_F_contig15627.3904.1 ID=mRNA_E-fasciculatus_F_contig15627.3904.1|Name=mRNA_E-fasciculatus_F_contig15627.3904.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15627:4..2012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTTGCGGCGATGTTTTGCGACACTTAGAGGGGGCGAGTGGCGCTGAAGG
ATCGCCGCACGGTCAGAGCGTTGTGAGTGGCACAGGTGCCGGTACCGGCG
CCGAACTCGGAGGTCAGGCTAGTATTAGGAGTGTGCCTTTCCCAACGGGG
GGAGCGACGCCAATCGCAAGGAACTCGTCCACAGCAGCGCGGGGGGCGGC
GGTTGCGCCAGTCCAAGAGCTCGTACCTGCATCGGAAGCAACAACAACCG
CCGCGGCGACAGTGGCAGCGAGAGGTGACATATCGACCATCGTGACCGAG
CCAGGCTTGCAGATTTTACCCAAGCGGAAAAAAGCCGAGGAGCAGGAAGA
GGAGAGGCTGGACGAAGGCGGCGTAAGGTCTGCACCGCGAGGGGTTAGAA
CACCAAAGCGACGGAAGACGGCAACAGGAGGCCCTGTTGACAGCGGCAAG
TGTTCGGCCGGCGCGAGAAATACTAGCGGTAACAACGGGAGAATCAGCAG
CAGCGGCGATAGCGGCGGCGGGCGGGAGGGTACAGTCCGGGGGAGTAGCG
ACGGTAACCGGAGAAGCGACGGGAGCGGTGAGGGTGGTGCCGGTCGCAGG
AAGCGCCGGACGTCTCCGTCGTCGATGTTCCGCGGGCGAGTATTCGTCGT
TCATGGAACCGGGCTAGAGAAGGAAGAGGAAGCGAGGATGGCGGATCTCG
TAACAAGAGTTGCGGCGATGTTTTGCGACACTTAGAGGGGGCGAGTGGCG
CTGAAGGATCGCCGCACGGTCAGAGCGTTGTGAGTGGCACAGGTGCCGGT
ACCGGCGCCGAACTCGGAGGTCAGGCTAGTATTAGGAGTGTGCCTTTCCC
AACGGGGGGAGCGACGCCAATCGCAAGGAACTCGTCCACAGCAGCGCGGG
GGGCGGCGGTTGCGCCAGTCCAAGAGCTCGTACCTGCATCGGAAGCAACA
ACAACCGCCGCGGCGACAGTGGCAGCGAGAGGTGACATATCGACCATCGT
GACCGAGCCAGGCTTGCAGATTTTACCCAAGCGGAAAAAAGCCGAGGAGC
AGGAAGAGGAGAGGCTGGACGAAGGCGGCGTAAGGTCTGCACCGCGAGGG
GTTAGAACACCAAAGCGACGGAAGACGGCAACAGGAGGCCCTGTTGACAG
CGGCAAGTGTTCGGCCGGCGCGAGAAATACTAGCGGTAACAACGGGAGAA
TCAGCAGCAGCGGCGATAGCGGCGGCGGGCGGGAGGGTACAGTCCGGGGG
AGTAGCGACGGTAACCGGAGAAGCGACGGGAGCGGTGAGGGTGGTGCCGG
TCGCAGGAAGCGCCGGACGTCTCCGTCGTCGATGTTCCGCGGGCGAGTAT
TCGTCGTTCATGGAACCGGGCTAGAGAAGGAAGAGGAAGCGAGGATGGCG
GATCTCGTAACAAGGCACGGCGGGCGCTGCCTGGACCCGAGCGCCTCGTC
TGCGCCCCTCCTCCGGCAGTCTCTCCTCTCCGCCGGCGTCGAGCTTACGC
CCGCCGCCGCCGCCGCCGCCGCTCCAGCCGCCCCCTTAGCCCCCCCCTGC
GAGGAGGAGGCACGGCGGGCGCTGCCTGGACCCGAGCGCCTCGTCTGCGC
CCCTCCTCCGGCAGTCTCTCCTCTCCGCCGGCGTCGAGCTTACGCCCGCC
GCCGCCGCCGCCGCCGCTCCAGCCGCCCCCTTAGCCCCCCCCTGCGAGGA
GGAG
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