mRNA_E-fasciculatus_F_contig1049.390.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1049.390.1
Unique NamemRNA_E-fasciculatus_F_contig1049.390.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 8.820e-86
Identity = 120/161 (74.53%), Postives = 137/161 (85.09%), Query Frame = 3
Query:    3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
            DNRLQ VPIRDPRAVAVSTYF+ V+ ++  NY++ H SLD+ VLEILP LCH TTLRHILF GLLS+R+ELFWYE+ +E+PFDWH+RWASFAGLILPG WIDGMV  NQ  +  NPHPGG + S  RTW+DEVSPGIR EMDSILRKWLPGVLLAR+GIPP
Sbjct:   65 DNRLQFVPIRDPRAVAVSTYFHRVHKDN--NYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIPP 223          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.750e-63
Identity = 99/166 (59.64%), Postives = 121/166 (72.89%), Query Frame = 3
Query:    3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYRE---QHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWI---DGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIP 482
            D+ LQ   +RDPRAVAVSTYFY    + P  Y +   +  SLDEAVL ILPQLC  TT+RH+LF+G LSD+SE+FWYE+A+ +P  WH+RWASFAG  LP SWI   D  +   Q+    +PHPGG++ S+KRTW DE+SP IR+EMDSILR WLPGVLL R GIP
Sbjct:   27 DDSLQFAVLRDPRAVAVSTYFY--VKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIP 190          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.440e-56
Identity = 89/156 (57.05%), Postives = 110/156 (70.51%), Query Frame = 3
Query:   27 IRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWID----GMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIP 482
            +RDPRAVAVSTYFY   +    ++  +  SLDEAV+ ILPQ+C  TT+RHILF+G LSDRSE+FWYE+A+ +P  W++RWAS AG  LP  WI      +  A +  R   PHPGG+  S+ RTW DEVSP  R EM+SILR WLPGVLLARF +P
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVP 156          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.700e-54
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 3
Query:  180 LFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
            +FEGLLSDRSE+FWYEE +E+PF WH+RWASFAGLILP +WIDGMV  NQE   FN HPGG K++AKRTWRDEVSPGI  +M+SILRKWLP VLLARF +PP
Sbjct:    1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVNQERLFFNRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVPP 102          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.690e-32
Identity = 65/171 (38.01%), Postives = 100/171 (58.48%), Query Frame = 3
Query:    3 DNRLQMVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQE--------GRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGI--PP 485
            D+R+QM+ +RDPRAVAVS++F+   ++ P        S+D  VL +LP +CH   LR+++    L  ++  F Y+E++ +P  WH RW S  GL  P   +  +   N          G+  + HPGGK+ + KRTW DE+S  + ++++ I R+WLP VLL +FGI  PP
Sbjct:  258 DDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIGAPP 426          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.890e-25
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 3
Query:   63 FYHVYNNSPRNYREQH-HSLDEAVLEILPQLCHLTTLRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMVVANQE--------GRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGI--PP 485
            F+H+  +    ++  H  S+D  VL +LP +CH   LR+++    L  ++  F Y+E++ +P  WH RW S  GL  P + +  +   N          G+  + HPGGK+ + KRTW DE+S  + ++++ I R+WLP VLL +FGI  PP
Sbjct:   10 FFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVV--LQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIGAPP 159          
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Match: A0A6H5KK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK10_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.880e-22
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  312 MVVANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLARFGIPP 485
            MV  NQ  +  NPHPGG +   KRTW++EVSPGIR EMDSILRKWLPGVLLAR+GIPP
Sbjct:    1 MVAENQAHKHLNPHPGGAETPFKRTWQNEVSPGIRPEMDSILRKWLPGVLLARYGIPP 58          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1049.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KDV7_9PHAE8.820e-8674.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE2.750e-6359.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI1.440e-5657.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUF6_ECTSI1.700e-5475.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJE4_ECTSI4.690e-3238.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP89_9PHAE1.890e-2534.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK10_9PHAE1.880e-2272.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1049contigE-fasciculatus_F_contig1049:18493..19038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1049.390.1prot_E-fasciculatus_F_contig1049.390.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1049 18510..18980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.1336482-UTR-E-fasciculatus_F_contig1049:18492..185091622927546.1336482-UTR-E-fasciculatus_F_contig1049:18492..18509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1049 18493..18509 +
1695995588.7734284-UTR-E-fasciculatus_F_contig1049:18492..185091695995588.7734284-UTR-E-fasciculatus_F_contig1049:18492..18509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1049 18493..18509 +
1622927546.154402-UTR-E-fasciculatus_F_contig1049:18980..190381622927546.154402-UTR-E-fasciculatus_F_contig1049:18980..19038Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1049 18981..19038 +
1695995588.7930415-UTR-E-fasciculatus_F_contig1049:18980..190381695995588.7930415-UTR-E-fasciculatus_F_contig1049:18980..19038Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1049 18981..19038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.1451685-CDS-E-fasciculatus_F_contig1049:18509..189801622927546.1451685-CDS-E-fasciculatus_F_contig1049:18509..18980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1049 18510..18980 +
1695995588.7817707-CDS-E-fasciculatus_F_contig1049:18509..189801695995588.7817707-CDS-E-fasciculatus_F_contig1049:18509..18980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1049 18510..18980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1049.390.1

>prot_E-fasciculatus_F_contig1049.390.1 ID=prot_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp
MVPIRDPRAVAVSTYFYHVYNNSPRNYREQHHSLDEAVLEILPQLCHLTT
LRHILFEGLLSDRSELFWYEEAIEEPFDWHHRWASFAGLILPGSWIDGMV
VANQEGRIFNPHPGGKKQSAKRTWRDEVSPGIRQEMDSILRKWLPGVLLA
RFGIPP*
back to top

mRNA from alignment at E-fasciculatus_F_contig1049:18493..19038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1049.390.1 ID=mRNA_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1049:18493..19038+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACAATCGCCTGCAAATGGTACCCATCAGGGATCCTCGTGCTGTGGCT GTCAGCACCTACTTCTACCACGTATACAACAACTCACCGAGAAATTATCG GGAGCAGCACCACTCTCTGGACGAGGCAGTATTGGAGATTCTCCCGCAAC TTTGCCACTTGACCACTCTACGTCATATCCTGTTCGAGGGACTACTGTCC GACAGGAGTGAATTATTTTGGTACGAAGAAGCCATCGAGGAACCTTTTGA CTGGCACCACCGCTGGGCGTCATTTGCTGGCCTAATTCTGCCTGGAAGCT GGATCGACGGCATGGTCGTGGCGAATCAAGAGGGAAGGATATTCAACCCT CACCCGGGAGGAAAAAAGCAATCAGCCAAGAGGACCTGGCGGGACGAGGT TTCCCCGGGAATACGTCAAGAAATGGATTCCATCCTCCGAAAATGGCTGC CAGGAGTACTTCTAGCGCGATTTGGAATTCCGCCTTGAAGAGAAGAACAT CCACGGCATTTTATTGGTAGCCACAGTGGTTGCTGGTGCAGCACAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1049:18493..19038+

>mRNA_E-fasciculatus_F_contig1049.390.1 ID=mRNA_E-fasciculatus_F_contig1049.390.1|Name=mRNA_E-fasciculatus_F_contig1049.390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1049:18493..19038+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTACCCATCAGGGATCCTCGTGCTGTGGCTGTCAGCACCTACTTCTA
CCACGTATACAACAACTCACCGAGAAATTATCGGGAGCAGCACCACTCTC
TGGACGAGGCAGTATTGGAGATTCTCCCGCAACTTTGCCACTTGACCACT
CTACGTCATATCCTGTTCGAGGGACTACTGTCCGACAGGAGTGAATTATT
TTGGTACGAAGAAGCCATCGAGGAACCTTTTGACTGGCACCACCGCTGGG
CGTCATTTGCTGGCCTAATTCTGCCTGGAAGCTGGATCGACGGCATGGTC
GTGGCGAATCAAGAGGGAAGGATATTCAACCCTCACCCGGGAGGAAAAAA
GCAATCAGCCAAGAGGACCTGGCGGGACGAGGTTTCCCCGGGAATACGTC
AAGAAATGGATTCCATCCTCCGAAAATGGCTGCCAGGAGTACTTCTAGCG
CGATTTGGAATTCCGCCTTGAATGGTACCCATCAGGGATCCTCGTGCTGT
GGCTGTCAGCACCTACTTCTACCACGTATACAACAACTCACCGAGAAATT
ATCGGGAGCAGCACCACTCTCTGGACGAGGCAGTATTGGAGATTCTCCCG
CAACTTTGCCACTTGACCACTCTACGTCATATCCTGTTCGAGGGACTACT
GTCCGACAGGAGTGAATTATTTTGGTACGAAGAAGCCATCGAGGAACCTT
TTGACTGGCACCACCGCTGGGCGTCATTTGCTGGCCTAATTCTGCCTGGA
AGCTGGATCGACGGCATGGTCGTGGCGAATCAAGAGGGAAGGATATTCAA
CCCTCACCCGGGAGGAAAAAAGCAATCAGCCAAGAGGACCTGGCGGGACG
AGGTTTCCCCGGGAATACGTCAAGAAATGGATTCCATCCTCCGAAAATGG
CTGCCAGGAGTACTTCTAGCGCGATTTGGAATTCCGCCTTGA
back to top