mRNA_E-fasciculatus_F_contig1562.3901.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1562.3901.1
Unique NamemRNA_E-fasciculatus_F_contig1562.3901.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1562.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1562contigE-fasciculatus_F_contig1562:15025..15564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size540
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928036.6753361-UTR-E-fasciculatus_F_contig1562:15024..151381622928036.6753361-UTR-E-fasciculatus_F_contig1562:15024..15138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1562 15025..15138 +
1695995797.8797321-UTR-E-fasciculatus_F_contig1562:15024..151381695995797.8797321-UTR-E-fasciculatus_F_contig1562:15024..15138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1562 15025..15138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928036.68648-CDS-E-fasciculatus_F_contig1562:15138..155641622928036.68648-CDS-E-fasciculatus_F_contig1562:15138..15564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1562 15139..15564 +
1695995797.8882647-CDS-E-fasciculatus_F_contig1562:15138..155641695995797.8882647-CDS-E-fasciculatus_F_contig1562:15138..15564Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1562 15139..15564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1562.3901.1prot_E-fasciculatus_F_contig1562.3901.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1562 15139..15564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1562.3901.1

>prot_E-fasciculatus_F_contig1562.3901.1 ID=prot_E-fasciculatus_F_contig1562.3901.1|Name=mRNA_E-fasciculatus_F_contig1562.3901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
MLLLPTPKSAVSGFVYAPRAHVSVSFLFFLLLLLLIYFYCATRRFWVSFA
ACNSVGFSGTRTLLQLSLRHLRFFFLTHVVAGYEFHSMGIRFLSAKSGPC
CTWYGMQYFHTQRSGVQKMHFRGTLVHGVAEEGVAADFRFI*
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mRNA from alignment at E-fasciculatus_F_contig1562:15025..15564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1562.3901.1 ID=mRNA_E-fasciculatus_F_contig1562.3901.1|Name=mRNA_E-fasciculatus_F_contig1562.3901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1562:15025..15564+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACCCAGACAAGCAACAGCACATACTCTCCGCGCGTGACCCAACAACTC
CGATTCTCGGCGGAACCTCAGAACGTACTATGCATAGTTTAGTGCTGAGT
GTTCCGACAAAACTATGCTTCTTCTTCCAACTCCGAAAAGCGCCGTTTCG
GGGTTCGTCTACGCCCCTCGAGCTCACGTCTCCGTCTCTTTTCTTTTCTT
CCTCCTCCTCCTCCTCCTAATCTACTTCTACTGCGCGACGAGAAGGTTTT
GGGTTAGTTTTGCGGCGTGCAACAGCGTCGGATTTTCTGGCACCCGGACC
CTTCTTCAGCTTTCCTTGCGCCATCTTCGATTTTTCTTCCTCACACACGT
CGTAGCTGGTTACGAATTTCACAGCATGGGGATCCGTTTTCTCAGCGCCA
AGTCTGGCCCGTGCTGCACGTGGTACGGCATGCAGTACTTCCACACCCAA
CGGTCGGGAGTGCAAAAGATGCACTTCAGGGGCACGTTGGTGCATGGTGT
GGCAGAGGAGGGTGTTGCCGCCGACTTCAGGTTTATTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1562:15025..15564+

>mRNA_E-fasciculatus_F_contig1562.3901.1 ID=mRNA_E-fasciculatus_F_contig1562.3901.1|Name=mRNA_E-fasciculatus_F_contig1562.3901.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1562:15025..15564+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTCTTCTTCCAACTCCGAAAAGCGCCGTTTCGGGGTTCGTCTACGC
CCCTCGAGCTCACGTCTCCGTCTCTTTTCTTTTCTTCCTCCTCCTCCTCC
TCCTAATCTACTTCTACTGCGCGACGAGAAGGTTTTGGGTTAGTTTTGCG
GCGTGCAACAGCGTCGGATTTTCTGGCACCCGGACCCTTCTTCAGCTTTC
CTTGCGCCATCTTCGATTTTTCTTCCTCACACACGTCGTAGCTGGTTACG
AATTTCACAGCATGGGGATCCGTTTTCTCAGCGCCAAGTCTGGCCCGTGC
TGCACGTGGTACGGCATGCAGTACTTCCACACCCAACGGTCGGGAGTGCA
AAAGATGCACTTCAGGGGCACGTTGGTGCATGGTGTGGCAGAGGAGGGTG
TTGCCGCCGACTTCAGGTTTATTTAGATGCTTCTTCTTCCAACTCCGAAA
AGCGCCGTTTCGGGGTTCGTCTACGCCCCTCGAGCTCACGTCTCCGTCTC
TTTTCTTTTCTTCCTCCTCCTCCTCCTCCTAATCTACTTCTACTGCGCGA
CGAGAAGGTTTTGGGTTAGTTTTGCGGCGTGCAACAGCGTCGGATTTTCT
GGCACCCGGACCCTTCTTCAGCTTTCCTTGCGCCATCTTCGATTTTTCTT
CCTCACACACGTCGTAGCTGGTTACGAATTTCACAGCATGGGGATCCGTT
TTCTCAGCGCCAAGTCTGGCCCGTGCTGCACGTGGTACGGCATGCAGTAC
TTCCACACCCAACGGTCGGGAGTGCAAAAGATGCACTTCAGGGGCACGTT
GGTGCATGGTGTGGCAGAGGAGGGTGTTGCCGCCGACTTCAGGTTTATTT
AG
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