mRNA_E-fasciculatus_F_contig1562.3900.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1562.3900.1
Unique NamemRNA_E-fasciculatus_F_contig1562.3900.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1562.3900.1 vs. uniprot
Match: D7G8N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N4_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 6.490e-81
Identity = 141/187 (75.40%), Postives = 145/187 (77.54%), Query Frame = 3 
Query:   30 RRLAATPSPHT*REEGCSVSHRAANPSRRQGGRAEHQ*Q*RQMALAHEGAAPGVFRRVQRLPGSRALPGLGRSEHTAVSVGKEITRGAAEGWQRVPTAPLCLHQQQR*QETISSHHATDVARGPRVNRRVGSTVSRCRRRADLPAGGGVLEVWVSFQRAARYPEEHHGLLLSLA*DLGDSGPRAEVP 590
            RR AATPSPHT REEGCSVS RAANPSRRQG RAE Q   RQMALAHE AAPGV RRVQRLP  RALP LGRSEHTA+SVGK+ T GAAEGW+RVPT P  LH        ISSHHA DV R PRVN RVGST SR RRRA LPAG GVLEVWVSFQRAA  P+E HGL LSLA DL  SGPR EVP
Sbjct:   33 RRPAATPSPHTFREEGCSVSRRAANPSRRQGSRAEQQQ--RQMALAHERAAPGVLRRVQRLPERRALPCLGRSEHTAISVGKKTTSGAAEGWERVPTVPPSLHXXXXXXXXISSHHAADVVRDPRVNGRVGSTFSRRRRRAVLPAGRGVLEVWVSFQRAA-CPKEQHGL-LSLARDLDYSGPRPEVP 215
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BLAST of mRNA_E-fasciculatus_F_contig1562.3900.1 vs. uniprot
Match: A0A6H5KVX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX3_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.230e-76
Identity = 134/174 (77.01%), Postives = 137/174 (78.74%), Query Frame = 3 
Query:   30 RRLAATPSPHT*REEGCSVSHRAANPSRRQGGRAEHQ*Q*RQMALAHEGAAPGVFRRVQRLPGSRALPGLGRSEHTAVSVGKEITRGAAEGWQRVPTAPLCLHQQQR*QETISSHHATDVARGPRVNRRVGSTVSRCRRRADLPAGGGVLEVWVSFQRAARYPEEHHGLLLSLA 551
            RR AATPSPHT REEGCSV  RAANPSRRQGGRAE Q   RQMALAHE AAPGV RRVQRLP  RALP LGRSEHTAVSVGKE T GA+EGW+RVP  P CLH  QR QETI S  A DV R PRVN RVGST SR RRRA LPAG GVLEVWV FQRAA  P+E HGL LSLA
Sbjct:   38 RRPAATPSPHTFREEGCSVPRRAANPSRRQGGRAEQQQ--RQMALAHERAAPGVLRRVQRLPERRALPCLGRSEHTAVSVGKETTSGASEGWERVPIVPACLHHHQRQQETIFSQQAADVVRDPRVNGRVGSTSSRRRRRAVLPAGRGVLEVWVLFQRAA-CPKEQHGL-LSLA 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1562.3900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8N4_ECTSI6.490e-8175.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX3_9PHAE1.230e-7677.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1562contigE-fasciculatus_F_contig1562:12310..12900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size593
Cds size591
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928036.6132817-CDS-E-fasciculatus_F_contig1562:12309..129001622928036.6132817-CDS-E-fasciculatus_F_contig1562:12309..12900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1562 12310..12900 -
1695995797.869844-CDS-E-fasciculatus_F_contig1562:12309..129001695995797.869844-CDS-E-fasciculatus_F_contig1562:12309..12900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1562 12310..12900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1562.3900.1prot_E-fasciculatus_F_contig1562.3900.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1562 12310..12900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1562.3900.1

>prot_E-fasciculatus_F_contig1562.3900.1 ID=prot_E-fasciculatus_F_contig1562.3900.1|Name=mRNA_E-fasciculatus_F_contig1562.3900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp
MTSSGVRHFYAGSRLPPPPTLDEKKDVPCLTALRILLGDRAAGQSINNNN
DKWLSPTRELRLVSFDVCNACRGAVPCRVWVGQNTPRSLWARKSREEQRK
GGNACQLPPSVFTSSNDSRRRSPPTTRRTLLGVRASTVVWDRPFRDVVAA
RTFLQGVVCLRFGFHFNEPLVIPRNTTGCCSHWPETLVTLDLGPRFQ
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mRNA from alignment at E-fasciculatus_F_contig1562:12310..12900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1562.3900.1 ID=mRNA_E-fasciculatus_F_contig1562.3900.1|Name=mRNA_E-fasciculatus_F_contig1562.3900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=591bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1562:12310..12900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGTCGTCTGGCGTTCGCCACTTTTACGCAGGCTCGCGGCTACCCCC
TCCCCCCACACTTGACGAGAAGAAGGATGTTCCGTGTCTCACCGCGCTGC
GAATCCTTCTCGGCGACAGGGCGGCAGGGCAGAGCATCAATAACAATAAC
GACAAATGGCTCTCGCCCACGAGGGAGCTGCGCCTGGTGTCTTTCGACGT
GTGCAACGCTTGCCGGGGAGCCGTGCCTTGCCGGGTTTGGGTCGGTCAGA
ACACACCGCGGTCTCTGTGGGCAAGGAAATCACGAGAGGAGCAGCGGAAG
GGTGGCAACGCGTGCCAACTGCCCCCCTCTGTCTTCACCAGCAGCAACGA
TAGCAGGAGACGATCTCCTCCCACCACGCGACGGACGTTGCTAGGGGTCC
GCGCGTCAACCGTCGTGTGGGATCGACCGTTTCGCGATGTCGTCGCCGCG
CGGACCTTCCTGCAGGGGGTGGTGTGCTTGAGGTTTGGGTTTCATTTCAA
CGAGCCGCTCGTTATCCCGAGGAACACCACGGGCTGCTGCTCTCATTGGC
CTGAGACCTTGGTGACTCTGGACCTAGGGCCGAGGTTCCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1562:12310..12900-

>mRNA_E-fasciculatus_F_contig1562.3900.1 ID=mRNA_E-fasciculatus_F_contig1562.3900.1|Name=mRNA_E-fasciculatus_F_contig1562.3900.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1562:12310..12900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGTCGTCTGGCGTTCGCCACTTTTACGCAGGCTCGCGGCTACCCCC
TCCCCCCACACTTGACGAGAAGAAGGATGTTCCGTGTCTCACCGCGCTGC
GAATCCTTCTCGGCGACAGGGCGGCAGGGCAGAGCATCAATAACAATAAC
GACAAATGGCTCTCGCCCACGAGGGAGCTGCGCCTGGTGTCTTTCGACGT
GTGCAACGCTTGCCGGGGAGCCGTGCCTTGCCGGGTTTGGGTCGGTCAGA
ACACACCGCGGTCTCTGTGGGCAAGGAAATCACGAGAGGAGCAGCGGAAG
GGTGGCAACGCGTGCCAACTGCCCCCCTCTGTCTTCACCAGCAGCAACGA
TAGCAGGAGACGATCTCCTCCCACCACGCGACGGACGTTGCTAGGGGTCC
GCGCGTCAACCGTCGTGTGGGATCGACCGTTTCGCGATGTCGTCGCCGCG
CGGACCTTCCTGCAGGGGGTGGTGTGCTTGAGGTTTGGGTTTCATTTCAA
CGAGCCGCTCGTTATCCCGAGGAACACCACGGGCTGCTGCTCTCATTGGC
CTGAGACCTTGGTGACTCTGGACCTAGGGCCGAGGTTCCAAATGACGTCG
TCTGGCGTTCGCCACTTTTACGCAGGCTCGCGGCTACCCCCTCCCCCCAC
ACTTGACGAGAAGAAGGATGTTCCGTGTCTCACCGCGCTGCGAATCCTTC
TCGGCGACAGGGCGGCAGGGCAGAGCATCAATAACAATAACGACAAATGG
CTCTCGCCCACGAGGGAGCTGCGCCTGGTGTCTTTCGACGTGTGCAACGC
TTGCCGGGGAGCCGTGCCTTGCCGGGTTTGGGTCGGTCAGAACACACCGC
GGTCTCTGTGGGCAAGGAAATCACGAGAGGAGCAGCGGAAGGGTGGCAAC
GCGTGCCAACTGCCCCCCTCTGTCTTCACCAGCAGCAACGATAGCAGGAG
ACGATCTCCTCCCACCACGCGACGGACGTTGCTAGGGGTCCGCGCGTCAA
CCGTCGTGTGGGATCGACCGTTTCGCGATGTCGTCGCCGCGCGGACCTTC
CTGCAGGGGGTGGTGTGCTTGAGGTTTGGGTTTCATTTCAACGAGCCGCT
CGTTATCCCGAGGAACACCACGGGCTGCTGCTCTCATTGGCCTGAGACCT
TGGTGACTCTGGACCTAGGGCCGAGGTTCCAA
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