mRNA_E-fasciculatus_F_contig1561.3896.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1561.3896.1
Unique NamemRNA_E-fasciculatus_F_contig1561.3896.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A6H5KQJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.190e-73
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 1
Query:    1 WVLCGFDGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVLDSVTMR 351
            WVLCGFDGGEDIRLIGTGVGGV+ALKA IVKWDVCYGLVRCSHTLEQAGYVQT F+KFVWVYWRPDNIPVMRKMKIGV EGEMKSLFAPYHAELQACALHELGEQ LADVLDSVTMR
Sbjct:   35 WVLCGFDGGEDIRLIGTGVGGVEALKASIVKWDVCYGLVRCSHTLEQAGYVQTGFVKFVWVYWRPDNIPVMRKMKIGVNEGEMKSLFAPYHAELQACALHELGEQSLADVLDSVTMR 151          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: D8LSR6_ECTSI (Actin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR6_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.970e-72
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 1
Query:    1 WVLCGFDGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVLDSVTMR 351
            WVLCGFDGG DIRL GTGVGGV+ALKA IV+WDVCYGLVRCS+TLEQAG VQT F+KFVWVYWRPDNIPV+RKMKIGV EGEMKS+FAPYHAELQACALHELGEQPLADVLDSVTMR
Sbjct:   35 WVLCGFDGGGDIRLFGTGVGGVEALKASIVEWDVCYGLVRCSYTLEQAGDVQTGFVKFVWVYWRPDNIPVIRKMKIGVNEGEMKSVFAPYHAELQACALHELGEQPLADVLDSVTMR 151          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A2R5G251_9STRA (Drebrin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G251_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.830e-23
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 WVLCGFDGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVLDSVT 345
            ++L G++  + +++I  G  GV  LKA +   DV YGL+RC   +E+ G V  D  KF++V WRPD IP+ RKMKIG  +G++K LF+ YH ++      E+ ++ + D+L  +T
Sbjct:   25 FMLAGYEDDDTLKVIACGSEGVAGLKAALPSSDVAYGLLRCQFMVEKVGQVAADTTKFIFVLWRPDAIPLKRKMKIGRYDGQVKKLFSSYHTDMDINDEDEISDEIIHDMLAKIT 139          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A6S7ZCW5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZCW5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.040e-22
Identity = 44/117 (37.61%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 WVLCGFDGGED--IRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVLDSVT 345
            +V+ G+D      + L+G+G  G++ +KA     DVCY L+R ++T E+AG +++D  +F++VY RP++IP+ RKMKIG  EG++K LF P+    +  +L EL +  + D++ ++T
Sbjct:   25 FVVVGYDENNPNALILLGSGSSGIEGIKATCKADDVCYSLLRVNYTFEKAGVIKSDASRFIFVYLRPESIPLQRKMKIGTAEGQVKKLFTPFMKNFEISSLDELNKDKVDDMIATIT 141          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A0B6YA28_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YA28_9EUPU)

HSP 1 Score: 58.2 bits (139), Expect = 1.570e-7
Identity = 34/113 (30.09%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 WVLCG-FDGGED-IRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVL 333
            +V+CG FDG  + I ++ TG   +  + + +   +  YGLVR      +  +  +  IKFV+++W  +N+PV +K + GV  G ++S F+PYH  ++A +  +L    +   L
Sbjct:   29 YVICGHFDGNPNLIGVLYTG-SDISEIGSKMDPTEAMYGLVRY-----ETKFDMSTTIKFVYIHWIGENLPVGKKGRYGVIHGSIESRFSPYHLLVEASSPEDLDPSKILHTL 135          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A1Y1W684_9FUNG (Actin depolymerizing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W684_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-6
Identity = 31/109 (28.44%), Postives = 54/109 (49.54%), Query Frame = 1
Query:    1 WVLCGF--DGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPL 321
            W+L  F  D  +++++ GTG GG+  LK  +      +G VR   + ++         KFV++ W      VMRK K+ V +G++K++   +  E+ A  L EL    +
Sbjct:   25 WLLLEFVDDRKDELKVGGTGTGGLDELKTHLKDDQAAFGYVRMIMSNDELS----QRTKFVFISWCGVGTRVMRKAKLSVQKGDVKNVLRSFSIEVPASELGELANDEI 129          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: UPI0020074A68 (uncharacterized protein n=1 Tax=Xylaria bambusicola TaxID=326684 RepID=UPI0020074A68)

HSP 1 Score: 53.1 bits (126), Expect = 2.390e-6
Identity = 30/107 (28.04%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    1 WVLCGFDG--GEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQ 315
            W+L  +    G D++L GTG GG+  L A +      +G  R    +E A   ++  +KF+ V W   +  VMRK ++G    E+K + + +  ++ A    +L E+
Sbjct:   25 WLLISYAAPTGRDLKLSGTGKGGLSELAAHLDDGQAQWGYAR----VEYANDTESKRVKFILVVWIGASTKVMRKARVGFETAEVKKVLSHHSIQVDATDRGDLDEK 127          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: D3BR95_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BR95_POLPP)

HSP 1 Score: 54.7 bits (130), Expect = 2.760e-6
Identity = 33/113 (29.20%), Postives = 58/113 (51.33%), Query Frame = 1
Query:    1 WVLCGFDGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPLADVLDS 339
            W+L G++G E + L+G+G GG+  L + +    V YGLV+ S  ++ +   +   I +V +     N+  M K KI   +G +   F+P    L A    E+ ++   ++LDS
Sbjct:  234 WMLIGYEGNEQLSLVGSGSGGIDELVSNLRADQVNYGLVKVSDRIDNSITTKVAQINWVGI-----NVSPMFKGKITSHKGVVDDFFSPISIALYA----EITKELTNEILDS 337          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: UPI000440FAD2 (ADF-like domain-containing protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440FAD2)

HSP 1 Score: 52.4 bits (124), Expect = 4.540e-6
Identity = 31/109 (28.44%), Postives = 51/109 (46.79%), Query Frame = 1
Query:    1 WVLCGF--DGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPL 321
            W+L  +  D  + + L  TG GG+  LK  +      Y  VR  +  ++    +    KF+ V W      VMRK KI V  G++K++   +  E+ A    +L E+P+
Sbjct:   25 WMLIDYETDRSDKLVLTKTGSGGLSELKEVVDPSKASYAYVRVGYANDKESKRE----KFILVVWIGSGCKVMRKAKISVQAGDVKTVLRVFSIEVAAREKDDLNEEPI 129          
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Match: A0A8H4X0N3_9HYPO (ADF-H domain-containing protein n=1 Tax=Fusarium sarcochroum TaxID=1208366 RepID=A0A8H4X0N3_9HYPO)

HSP 1 Score: 52.4 bits (124), Expect = 4.690e-6
Identity = 32/109 (29.36%), Postives = 52/109 (47.71%), Query Frame = 1
Query:    1 WVLCGFDG--GEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGYVQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALHELGEQPL 321
            W+L  +    G  + L  TG GG+  L + +    V YG VR    +E A   ++  +KF  V W  +N  VMRK ++ +  G++KS  A +   +      EL E+ +
Sbjct:   25 WLLISYAAATGNKLTLTKTGTGGLSELVSELDDGQVQYGYVR----VEYANDKESTRVKFALVVWIGENTKVMRKARVSIESGDVKSQLAHHSIAVTTGDKSELDEKDI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1561.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KQJ0_9PHAE1.190e-7394.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSR6_ECTSI1.970e-7289.74Actin binding protein n=1 Tax=Ectocarpus siliculos... [more]
A0A2R5G251_9STRA2.830e-2339.13Drebrin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A6S7ZCW5_9STRA1.040e-2237.61Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0B6YA28_9EUPU1.570e-730.09Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
A0A1Y1W684_9FUNG1.260e-628.44Actin depolymerizing protein n=1 Tax=Linderina pen... [more]
UPI0020074A682.390e-628.04uncharacterized protein n=1 Tax=Xylaria bambusicol... [more]
D3BR95_POLPP2.760e-629.20Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
UPI000440FAD24.540e-628.44ADF-like domain-containing protein n=1 Tax=Stereum... [more]
A0A8H4X0N3_9HYPO4.690e-629.36ADF-H domain-containing protein n=1 Tax=Fusarium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1561contigE-fasciculatus_F_contig1561:1865..2626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue2.7e-58
Seed eggNOG ortholog2880.D8LSR6
EggNOG free text desc.Cofilin/tropomyosin-type actin-binding protein
EggNOG OGs2BN41@1,2S1NH@2759
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-15_002890.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.5394323-CDS-E-fasciculatus_F_contig1561:1864..21461622928034.5394323-CDS-E-fasciculatus_F_contig1561:1864..2146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1561 1865..2146 -
1695995797.6956077-CDS-E-fasciculatus_F_contig1561:1864..21461695995797.6956077-CDS-E-fasciculatus_F_contig1561:1864..2146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1561 1865..2146 -
1622928034.5509796-CDS-E-fasciculatus_F_contig1561:2557..26261622928034.5509796-CDS-E-fasciculatus_F_contig1561:2557..2626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1561 2558..2626 -
1695995797.706287-CDS-E-fasciculatus_F_contig1561:2557..26261695995797.706287-CDS-E-fasciculatus_F_contig1561:2557..2626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1561 2558..2626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1561.3896.1prot_E-fasciculatus_F_contig1561.3896.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1561 1865..2626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1561.3896.1

>prot_E-fasciculatus_F_contig1561.3896.1 ID=prot_E-fasciculatus_F_contig1561.3896.1|Name=mRNA_E-fasciculatus_F_contig1561.3896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
WVLCGFDGGEDIRLIGTGVGGVQALKACIVKWDVCYGLVRCSHTLEQAGY
VQTDFIKFVWVYWRPDNIPVMRKMKIGVTEGEMKSLFAPYHAELQACALH
ELGEQPLADVLDSVTMR
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mRNA from alignment at E-fasciculatus_F_contig1561:1865..2626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1561.3896.1 ID=mRNA_E-fasciculatus_F_contig1561.3896.1|Name=mRNA_E-fasciculatus_F_contig1561.3896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1561:1865..2626- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGTGCTGTGCGGATTCGACGGAGGGGAGGACATCCGGCTGATCGGCAC CGGTGTCGGAGGCGTACAGGTGAGCGTGCACACATGCTTGCCATGGCGAA CTCGCCGCGGAGCTAGATTTGCTTGCGCTGGACAATCGCTTCGGTTTTGC GGTTGTTGTAGGGTGCTTCAAAGTCAAATGTCAAATGCATTTCAAAAACA TGGAGCAAAGAGACGGTTCTTTCTCCGAACGGAGCTTTAGGTTCTGCCGC GCTGGCGGCTATTAGCAATCCGTCCTGTTCGGTACTGCTGGAAAGCGTGT GGAACAACGACAGCAGCAAGGACTCCACACGCTAGCAAGAAGCTAAGCAT GCATGGCTTTCGAACGCCTGCGAGGTTGCTTGGTCGTTTGACGCATATTG TCCACGCATTGCTTTGCGGTGCGTTGTTGTGGTTGAAAACTGACAACCAT TTATTAGTCTCCCTTCCCGCTTGTCGGCAGGCTCTCAAAGCATGTATCGT GAAGTGGGATGTGTGCTACGGGTTGGTGCGCTGCAGCCACACGCTGGAGC AGGCCGGGTACGTGCAAACCGACTTCATTAAGTTCGTGTGGGTGTACTGG AGGCCGGACAACATCCCCGTGATGCGGAAGATGAAGATTGGGGTCACCGA AGGCGAGATGAAGTCTCTGTTCGCTCCCTACCACGCCGAGCTGCAGGCCT GCGCCCTGCACGAGTTAGGAGAGCAACCGCTCGCCGATGTCCTGGACAGC GTAACGATGAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1561:1865..2626-

>mRNA_E-fasciculatus_F_contig1561.3896.1 ID=mRNA_E-fasciculatus_F_contig1561.3896.1|Name=mRNA_E-fasciculatus_F_contig1561.3896.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1561:1865..2626- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGGTGCTGTGCGGATTCGACGGAGGGGAGGACATCCGGCTGATCGGCAC
CGGTGTCGGAGGCGTACAGTGGGTGCTGTGCGGATTCGACGGAGGGGAGG
ACATCCGGCTGATCGGCACCGGTGTCGGAGGCGTACAGGCTCTCAAAGCA
TGTATCGTGAAGTGGGATGTGTGCTACGGGTTGGTGCGCTGCAGCCACAC
GCTGGAGCAGGCCGGGTACGTGCAAACCGACTTCATTAAGTTCGTGTGGG
TGTACTGGAGGCCGGACAACATCCCCGTGATGCGGAAGATGAAGATTGGG
GTCACCGAAGGCGAGATGAAGTCTCTGTTCGCTCCCTACCACGCCGAGCT
GCAGGCCTGCGCCCTGCACGAGTTAGGAGAGCAACCGCTCGCCGATGTCC
TGGACAGCGTAACGATGAGGGCTCTCAAAGCATGTATCGTGAAGTGGGAT
GTGTGCTACGGGTTGGTGCGCTGCAGCCACACGCTGGAGCAGGCCGGGTA
CGTGCAAACCGACTTCATTAAGTTCGTGTGGGTGTACTGGAGGCCGGACA
ACATCCCCGTGATGCGGAAGATGAAGATTGGGGTCACCGAAGGCGAGATG
AAGTCTCTGTTCGCTCCCTACCACGCCGAGCTGCAGGCCTGCGCCCTGCA
CGAGTTAGGAGAGCAACCGCTCGCCGATGTCCTGGACAGCGTAACGATGA
GG
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