mRNA_E-fasciculatus_F_contig15591.3886.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15591.3886.1
Unique NamemRNA_E-fasciculatus_F_contig15591.3886.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15591.3886.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.330e-37
Identity = 234/491 (47.66%), Postives = 246/491 (50.10%), Query Frame = 1 
Query:    4 QAGGSGRELDVEVFGKRVRFERTGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------GRGKSGRRAPTSPRNFTVRGXXXXXXXXXXXPPTKMSDRRLGPSRDAGEADDGEWAAGFETVSAKETE--------------------------------------------------SDCESAMGGSGAA--KVEWEAGFRESRTAPGAEDSEDGEWPAGFEAVSEXXXXXXXXXXXXXXXXSAEAEWEAGFQESRTEEEVEDXXXXGEKAARFGSVSQEAESDCESAMGSGGAASAEVEWEDGFREEPQLHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRREEQGAEDGDDDEWAAGFEPVSAEEPARDTKADRGFGITRV 1287
            QAGGSGRELDVEVFGKRVRFERTGGSP         X             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                 XXXXXXXXXXXXXXXXXX           GRGK G R P S RNF VRGXXXXXXXXX  PPTK+  RR   SRDAG ADDGEWAAGFETVSA+ETE                                                  SDCESAMGG GAA  +VEWE GFRESRT  GAEDS+DGEW AGFEAVSE                SAE EWE GF+ESRTE+    XXXX        + ++EAESDCESAMGSG         + GFRE                                                  R EQGAE G      AGFEPVS E   R+T ADRG   T +
Sbjct:  686 QAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGHEGGHDDSRGGRGPAVLGSDDPENASISSAXXXXXXXXXXXXXXXXXXXXXXGLDSSAAGRGKPGLRNPASRRNFNVRGXXXXXXXXXE-PPTKIPGRRTRSSRDAGGADDGEWAAGFETVSAEETEADPENGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAAGFEAVSEEAESDCESAMGGGGAASAEVEWEDGFRESRTEQGAEDSDDGEWAAGFEAVSEEAESDCESAMGGGGAASAEVEWEDGFRESRTEQXXXXXXXXXXXXXXELASAKEAESDCESAMGSGXXXXXXXXXKAGFRES-------------------------------------------------RREQGAEXGX---XXAGFEPVS-EVTGRNTAADRGSAPTEI 1122
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15591.3886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLY3_ECTSI1.330e-3747.66Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15591contigE-fasciculatus_F_contig15591:88..1377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog2880.D8LLY3
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_002100.1
Exons1
Model size1290
Cds size1290
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928032.037388-CDS-E-fasciculatus_F_contig15591:87..13771622928032.037388-CDS-E-fasciculatus_F_contig15591:87..1377Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15591 88..1377 +
1695995796.1434731-CDS-E-fasciculatus_F_contig15591:87..13771695995796.1434731-CDS-E-fasciculatus_F_contig15591:87..1377Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15591 88..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15591.3886.1prot_E-fasciculatus_F_contig15591.3886.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15591 88..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15591.3886.1

>prot_E-fasciculatus_F_contig15591.3886.1 ID=prot_E-fasciculatus_F_contig15591.3886.1|Name=mRNA_E-fasciculatus_F_contig15591.3886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=430bp
RQAGGSGRELDVEVFGKRVRFERTGGSPPPPRPGSSRPPSMATAEAADTW
SDDDDGGGGGGGVDDDDSGLGDVSAAATHGSSSSWSSEEDDGDDGYGQGE
GHDDDGGGSNRGGAVVGSDDPDSSSSSSSNDDEERRLESSAAGRGKSGRR
APTSPRNFTVRGGGGGGDGGGGKPPTKMSDRRLGPSRDAGEADDGEWAAG
FETVSAKETESDCESAMGGSGAAKVEWEAGFRESRTAPGAEDSEDGEWPA
GFEAVSEEAESDCEGAVGGGGAASAEAEWEAGFQESRTEEEVEDDDDDGE
KAARFGSVSQEAESDCESAMGSGGAASAEVEWEDGFREEPQLHREDGEWA
AGFEVVSEECESDCESALGGGGAESAKVEWEDGFRESRREEQGAEDGDDD
EWAAGFEPVSAEEPARDTKADRGFGITRV*
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mRNA from alignment at E-fasciculatus_F_contig15591:88..1377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15591.3886.1 ID=mRNA_E-fasciculatus_F_contig15591.3886.1|Name=mRNA_E-fasciculatus_F_contig15591.3886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15591:88..1377+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACAGGCGGGTGGCTCCGGGCGAGAGCTAGACGTCGAAGTGTTCGGGAA
ACGGGTCCGCTTCGAGCGGACCGGGGGCTCGCCGCCGCCCCCACGGCCTG
GCTCTTCGCGGCCGCCCTCGATGGCCACCGCCGAGGCTGCTGACACGTGG
TCTGACGATGATGACGGAGGCGGCGGCGGCGGCGGTGTCGACGACGACGA
CTCTGGTCTTGGCGACGTGTCCGCCGCTGCTACCCACGGCTCCTCCTCTT
CTTGGTCCTCCGAGGAGGACGACGGTGATGATGGCTATGGGCAGGGGGAG
GGGCACGACGACGACGGCGGTGGTAGTAATCGGGGGGGCGCGGTTGTGGG
CAGCGATGACCCCGACAGCAGCAGCAGCAGCAGCAGTAACGACGACGAGG
AACGCCGCCTTGAGTCGAGTGCTGCCGGGAGGGGGAAGTCCGGCCGACGA
GCCCCGACGTCGCCGAGGAATTTCACCGTGCGCGGGGGCGGCGGCGGCGG
TGACGGCGGTGGCGGCAAGCCGCCGACAAAGATGTCTGATCGACGGCTTG
GGCCATCGAGGGACGCAGGAGAGGCAGACGACGGCGAGTGGGCTGCGGGG
TTCGAGACAGTGTCAGCCAAAGAAACGGAGTCGGACTGCGAGAGTGCGAT
GGGCGGCAGCGGGGCGGCAAAGGTTGAATGGGAGGCCGGTTTTCGGGAGT
CGAGAACAGCACCAGGAGCGGAAGACAGCGAGGACGGCGAGTGGCCTGCG
GGGTTCGAAGCGGTGTCCGAAGAAGCTGAGTCGGACTGCGAGGGTGCGGT
GGGTGGCGGCGGAGCGGCATCGGCCGAGGCTGAATGGGAGGCCGGTTTCC
AGGAGTCGAGAACAGAAGAAGAGGTGGAAGACGACGATGACGATGGCGAG
AAGGCGGCGAGGTTCGGATCGGTGTCTCAAGAAGCTGAGTCGGACTGCGA
GAGCGCAATGGGTAGTGGCGGAGCGGCATCGGCCGAGGTTGAATGGGAAG
ACGGTTTTCGCGAGGAGCCGCAGTTGCACAGAGAAGACGGCGAGTGGGCT
GCGGGGTTCGAAGTGGTGTCTGAAGAATGTGAGTCGGACTGCGAGAGCGC
ATTGGGTGGCGGCGGAGCGGAATCGGCCAAGGTTGAATGGGAGGACGGTT
TCCGCGAGTCTCGCAGAGAAGAACAAGGGGCGGAAGACGGCGACGATGAC
GAGTGGGCGGCAGGGTTTGAGCCGGTGTCAGCGGAAGAACCTGCCCGAGA
CACAAAGGCTGACCGCGGCTTCGGCATCACCCGAGTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15591:88..1377+

>mRNA_E-fasciculatus_F_contig15591.3886.1 ID=mRNA_E-fasciculatus_F_contig15591.3886.1|Name=mRNA_E-fasciculatus_F_contig15591.3886.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2580bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15591:88..1377+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACAGGCGGGTGGCTCCGGGCGAGAGCTAGACGTCGAAGTGTTCGGGAA
ACGGGTCCGCTTCGAGCGGACCGGGGGCTCGCCGCCGCCCCCACGGCCTG
GCTCTTCGCGGCCGCCCTCGATGGCCACCGCCGAGGCTGCTGACACGTGG
TCTGACGATGATGACGGAGGCGGCGGCGGCGGCGGTGTCGACGACGACGA
CTCTGGTCTTGGCGACGTGTCCGCCGCTGCTACCCACGGCTCCTCCTCTT
CTTGGTCCTCCGAGGAGGACGACGGTGATGATGGCTATGGGCAGGGGGAG
GGGCACGACGACGACGGCGGTGGTAGTAATCGGGGGGGCGCGGTTGTGGG
CAGCGATGACCCCGACAGCAGCAGCAGCAGCAGCAGTAACGACGACGAGG
AACGCCGCCTTGAGTCGAGTGCTGCCGGGAGGGGGAAGTCCGGCCGACGA
GCCCCGACGTCGCCGAGGAATTTCACCGTGCGCGGGGGCGGCGGCGGCGG
TGACGGCGGTGGCGGCAAGCCGCCGACAAAGATGTCTGATCGACGGCTTG
GGCCATCGAGGGACGCAGGAGAGGCAGACGACGGCGAGTGGGCTGCGGGG
TTCGAGACAGTGTCAGCCAAAGAAACGGAGTCGGACTGCGAGAGTGCGAT
GGGCGGCAGCGGGGCGGCAAAGGTTGAATGGGAGGCCGGTTTTCGGGAGT
CGAGAACAGCACCAGGAGCGGAAGACAGCGAGGACGGCGAGTGGCCTGCG
GGGTTCGAAGCGGTGTCCGAAGAAGCTGAGTCGGACTGCGAGGGTGCGGT
GGGTGGCGGCGGAGCGGCATCGGCCGAGGCTGAATGGGAGGCCGGTTTCC
AGGAGTCGAGAACAGAAGAAGAGGTGGAAGACGACGATGACGATGGCGAG
AAGGCGGCGAGGTTCGGATCGGTGTCTCAAGAAGCTGAGTCGGACTGCGA
GAGCGCAATGGGTAGTGGCGGAGCGGCATCGGCCGAGGTTGAATGGGAAG
ACGGTTTTCGCGAGGAGCCGCAGTTGCACAGAGAAGACGGCGAGTGGGCT
GCGGGGTTCGAAGTGGTGTCTGAAGAATGTGAGTCGGACTGCGAGAGCGC
ATTGGGTGGCGGCGGAGCGGAATCGGCCAAGGTTGAATGGGAGGACGGTT
TCCGCGAGTCTCGCAGAGAAGAACAAGGGGCGGAAGACGGCGACGATGAC
GAGTGGGCGGCAGGGTTTGAGCCGGTGTCAGCGGAAGAACCTGCCCGAGA
CACAAAGGCTGACCGCGGCTTCGGCATCACCCGAGTTTGACGACAGGCGG
GTGGCTCCGGGCGAGAGCTAGACGTCGAAGTGTTCGGGAAACGGGTCCGC
TTCGAGCGGACCGGGGGCTCGCCGCCGCCCCCACGGCCTGGCTCTTCGCG
GCCGCCCTCGATGGCCACCGCCGAGGCTGCTGACACGTGGTCTGACGATG
ATGACGGAGGCGGCGGCGGCGGCGGTGTCGACGACGACGACTCTGGTCTT
GGCGACGTGTCCGCCGCTGCTACCCACGGCTCCTCCTCTTCTTGGTCCTC
CGAGGAGGACGACGGTGATGATGGCTATGGGCAGGGGGAGGGGCACGACG
ACGACGGCGGTGGTAGTAATCGGGGGGGCGCGGTTGTGGGCAGCGATGAC
CCCGACAGCAGCAGCAGCAGCAGCAGTAACGACGACGAGGAACGCCGCCT
TGAGTCGAGTGCTGCCGGGAGGGGGAAGTCCGGCCGACGAGCCCCGACGT
CGCCGAGGAATTTCACCGTGCGCGGGGGCGGCGGCGGCGGTGACGGCGGT
GGCGGCAAGCCGCCGACAAAGATGTCTGATCGACGGCTTGGGCCATCGAG
GGACGCAGGAGAGGCAGACGACGGCGAGTGGGCTGCGGGGTTCGAGACAG
TGTCAGCCAAAGAAACGGAGTCGGACTGCGAGAGTGCGATGGGCGGCAGC
GGGGCGGCAAAGGTTGAATGGGAGGCCGGTTTTCGGGAGTCGAGAACAGC
ACCAGGAGCGGAAGACAGCGAGGACGGCGAGTGGCCTGCGGGGTTCGAAG
CGGTGTCCGAAGAAGCTGAGTCGGACTGCGAGGGTGCGGTGGGTGGCGGC
GGAGCGGCATCGGCCGAGGCTGAATGGGAGGCCGGTTTCCAGGAGTCGAG
AACAGAAGAAGAGGTGGAAGACGACGATGACGATGGCGAGAAGGCGGCGA
GGTTCGGATCGGTGTCTCAAGAAGCTGAGTCGGACTGCGAGAGCGCAATG
GGTAGTGGCGGAGCGGCATCGGCCGAGGTTGAATGGGAAGACGGTTTTCG
CGAGGAGCCGCAGTTGCACAGAGAAGACGGCGAGTGGGCTGCGGGGTTCG
AAGTGGTGTCTGAAGAATGTGAGTCGGACTGCGAGAGCGCATTGGGTGGC
GGCGGAGCGGAATCGGCCAAGGTTGAATGGGAGGACGGTTTCCGCGAGTC
TCGCAGAGAAGAACAAGGGGCGGAAGACGGCGACGATGACGAGTGGGCGG
CAGGGTTTGAGCCGGTGTCAGCGGAAGAACCTGCCCGAGACACAAAGGCT
GACCGCGGCTTCGGCATCACCCGAGTTTGA
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