mRNA_E-fasciculatus_F_contig10488.388.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10488.388.1
Unique NamemRNA_E-fasciculatus_F_contig10488.388.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10488.388.1 vs. uniprot
Match: D7FY62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY62_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 2.740e-106
Identity = 165/194 (85.05%), Postives = 174/194 (89.69%), Query Frame = 3 
Query:    3 LMPQASLYKLGSPRKLSGEGNTWDILWALHINGVVHQVSMQRRLSQKIVVKHDGKTLLDKVFVLAKPYEGYCLVAWVNQGISFGIFCTTDLRCIQTNADHYDLRVNGVKFTDMPDGCRLRQIQQDVALRRSASVPNMSGTRAGDA--SGGNGHSGTSSGGAGRNRSGSAAVPGAKALATPAAPAKAHSISRMTT 578
            LMPQAS+YKLGSPRKLSGEGNTWDILWAL ING VHQVSMQRRLSQKI+VKHDGKTLLDKVFVL KPYEGYCLVAWVNQGISFGIFCTT+LRCIQTNADHYDLRVNGVKFT +PDGCRLRQIQQD ALRRSASVPNMSG RAGDA   GGNGH G+++GGAGR+  GSAA  G KA AT   P KAH+ISRMTT
Sbjct:   26 LMPQASIYKLGSPRKLSGEGNTWDILWALQINGAVHQVSMQRRLSQKIIVKHDGKTLLDKVFVLTKPYEGYCLVAWVNQGISFGIFCTTELRCIQTNADHYDLRVNGVKFTALPDGCRLRQIQQDAALRRSASVPNMSGARAGDAFGDGGNGHRGSNNGGAGRDSRGSAAEAGGKASATTTVPPKAHAISRMTT 219
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10488.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY62_ECTSI2.740e-10685.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10488contigE-fasciculatus_F_contig10488:519..3767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003670.1
Exons4
Model size1569
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10488.388.1prot_E-fasciculatus_F_contig10488.388.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10488 524..2779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.915583-UTR-E-fasciculatus_F_contig10488:518..5231622927545.915583-UTR-E-fasciculatus_F_contig10488:518..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10488 519..523 +
1695995588.5968072-UTR-E-fasciculatus_F_contig10488:518..5231695995588.5968072-UTR-E-fasciculatus_F_contig10488:518..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10488 519..523 +
1622927545.9726243-UTR-E-fasciculatus_F_contig10488:2779..37671622927545.9726243-UTR-E-fasciculatus_F_contig10488:2779..3767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10488 2780..3767 +
1695995588.6595423-UTR-E-fasciculatus_F_contig10488:2779..37671695995588.6595423-UTR-E-fasciculatus_F_contig10488:2779..3767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10488 2780..3767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.9249995-CDS-E-fasciculatus_F_contig10488:523..6311622927545.9249995-CDS-E-fasciculatus_F_contig10488:523..631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 524..631 +
1695995588.610011-CDS-E-fasciculatus_F_contig10488:523..6311695995588.610011-CDS-E-fasciculatus_F_contig10488:523..631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 524..631 +
1622927545.9382312-CDS-E-fasciculatus_F_contig10488:975..11311622927545.9382312-CDS-E-fasciculatus_F_contig10488:975..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 976..1131 +
1695995588.6224017-CDS-E-fasciculatus_F_contig10488:975..11311695995588.6224017-CDS-E-fasciculatus_F_contig10488:975..1131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 976..1131 +
1622927545.9501698-CDS-E-fasciculatus_F_contig10488:1388..15101622927545.9501698-CDS-E-fasciculatus_F_contig10488:1388..1510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 1389..1510 +
1695995588.6349962-CDS-E-fasciculatus_F_contig10488:1388..15101695995588.6349962-CDS-E-fasciculatus_F_contig10488:1388..1510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 1389..1510 +
1622927545.96314-CDS-E-fasciculatus_F_contig10488:2589..27791622927545.96314-CDS-E-fasciculatus_F_contig10488:2589..2779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 2590..2779 +
1695995588.6450124-CDS-E-fasciculatus_F_contig10488:2589..27791695995588.6450124-CDS-E-fasciculatus_F_contig10488:2589..2779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10488 2590..2779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10488.388.1

>prot_E-fasciculatus_F_contig10488.388.1 ID=prot_E-fasciculatus_F_contig10488.388.1|Name=mRNA_E-fasciculatus_F_contig10488.388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=192bp
MPQASLYKLGSPRKLSGEGNTWDILWALHINGVVHQVSMQRRLSQKIVVK
HDGKTLLDKVFVLAKPYEGYCLVAWVNQGISFGIFCTTDLRCIQTNADHY
DLRVNGVKFTDMPDGCRLRQIQQDVALRRSASVPNMSGTRAGDASGGNGH
SGTSSGGAGRNRSGSAAVPGAKALATPAAPAKAHSISRMTT*
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mRNA from alignment at E-fasciculatus_F_contig10488:519..3767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10488.388.1 ID=mRNA_E-fasciculatus_F_contig10488.388.1|Name=mRNA_E-fasciculatus_F_contig10488.388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3249bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10488:519..3767+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACTCATGCCGCAAGCATCACTTTACAAGCTAGGGTCCCCGAGAAAGCTC
TCTGGGGAGGGCAACACCTGGGACATACTCTGGGCGCTGCATATAAACGG
GGTCGTTCATCAGGTACGGCGAAATACGCTGTGCATATTGCGTGATCACG
TTGCCTTCAATTATTCCAGGGGCCGGTAAGCTGTTTCCCGGGATGAAGCC
TTCTCACGAAGAACCTTGGAGGAAAACAGCGCAAGAGGCCGACATTAGTG
ACCCCTGTCGCGACTTCACACTCCGGCTTCACCACTGAGTCTGCGCGTGC
GATGTCAACCACACCTATATCGGAAATTGCATGATCTGGTCGTCGCCAGC
AACACGCCATGACGCTTTCATCCACCACAACGCGGTACTTGGGAGATCGA
GGCTGAAATAACTCTGAAAATGCGTCTCTCCTTGCGCGCACGTATTCCTC
GACCAAGGTATCGATGCAGAGGAGGCTCTCCCAAAAGATAGTCGTGAAGC
ACGACGGGAAAACCTTGCTGGACAAGGTGTTCGTGTTGGCGAAGCCTTAC
GAGGGCTACTGCCTGGTGGCCTGGGTCAACCAGGGGATCAGTTTCGGGAT
ATTCTGCACAACGGTAAGGATGCGACGGCCTTCACGCCAACGGCGATTTC
AGCCCTATACCCGCAAAATGCCGCGTTATCGTTCTCCGGGCGGATGTGAT
TCTTGCCCCTGATTCCGCCCCCCTCATAAGACCATGCGCGCCTTTGAGGT
GTCCGCATACTACGACGTCCAGGTACGTCAAGCAACCTCTATGTCCCGGT
TGACTGCCCTTCCTCTGACAAGTGTTTCCCCCCTTTAGCGCAAGACCTGA
CCCTAACGCTACTTGTGCAGGATTTGAGGTGCATCCAGACAAACGCCGAT
CACTACGATCTCCGCGTCAATGGGGTCAAGTTCACGGACATGCCGGACGG
CTGTCGGTTGAGGCAGATACAGCAAGATGTTGCTCTCCGGCGGTAAGTGC
CGTTGTCAGACGTGATAAATAGCGGTTTTGTGGCCTACCAAAGAACGTCG
ACAGGCGGCAGGAGGTTTCAAGACGCTCCAGTCAATTGATGTAGTTGAGG
CATCAGCCGGCAGGAGCCATCAGAACGCGGTATGTAGCTCTAGAAAAAGC
TGATTCATGCGAGAGTATGAGAAAACTTCTTCGAGCAAGCAAAGGTAGCA
GCGATCCGTGTCATAGGCCAGCGCAAAAGCGAAATTGAGGTGTTTGTTTT
TGAGCGCATTGGCTGAGCGCTCTGGTTCTTGGTGCCGTAGTTCCGGGGCG
ATTTCGTGTTTTCCAACTGTCCCCAAGACATGAGTGACACGACCAAATCA
GGTGGTGGAGGCCATTGCCAAAGAGAGATGGCTCTCGACCGGTGGGACGT
TCCAGTGTTTCACACGTTTCTATCTTGCTTGGTTCGGGCGGAAGCAACTG
TTCATGTCCTTGTCAAGCGAGTCGTGTCTTCTGGACACAAGTGCTCTTCG
TTTGAGGACGGCCAACATGTCGAAGGTTGCGCTAGAATGCGAGGAAGTGT
CAACACAGCAGCGAAGGAACGCTGCCGGCAGCACTGTCTGAAGCGGCAGA
ACCCAACAGCACTTACGGCCTATGATTTGAGGGCAATGCCGCACGAGGTC
GCCATCAAACAAGTGCTGTCTTTACGTATCAACACGAAAGCAAGCTCGAT
CGGATTGGCATTTGCTCTTTGTTGTTGTTGTGGCAAGTCAACCTTTGGCA
TTTCTTGGGGTCAATATTGTAAAACACATTCGAATTGAACCCCGCCGGCA
CCTCTTATGCCCGTGGCCGACCCGGCACATTTCATGTTTTTTCTTTAGTT
TCCGACCGTGTCGATCATTCGCTGTCCCCTTGCACCATCAGAATCATCCA
AGTATTCATCATTTGAGCGGTCCAAAAGTGCCCTTCAGCATGGCGACTAG
TTACCGGAAGAACCGTGTTCTTCAACCACCTCGATGTAGTGGCAGTCATT
GTTTCCGACGTCGACCCCCAACGAACGTCGTCGTTCTTGCCTTGCCCCTT
CTCTCTGCTGTGCGTGCGCAGGTCTGCTTCCGTTCCCAACATGTCCGGCA
CCCGCGCCGGTGACGCCTCCGGCGGCAATGGCCACAGCGGCACCAGCAGC
GGCGGGGCCGGCCGTAACAGAAGTGGCTCCGCGGCGGTGCCAGGGGCGAA
GGCTTTGGCGACACCGGCGGCTCCGGCCAAGGCCCACTCCATCTCCCGTA
TGACGACCTGAACGGGGCCCGTGGGCGTCGCAGTAGAACCCGCCCGGATC
GATGCGACGTGTTCAATAGCGTGTGGGTGGGGAACATGCCTCAGAACGGT
CTCGATGAAGGGCTTCTGTTGGGTACAGGTACACACATGATCGCTCGGCC
ACGAAACGTCGGGTATGTAGAGATGACAAGAAAACAATTCTGCTGCGTAC
GAAAATTTACATGAAATCTTCCTTGGGGATCTTTTCCTTCATTAACGCTT
CCGTGTGGAGGCTGAGCCTTGAATATTGACGGGATTTTCGCGGAGAGGAA
TACACCCGTCTTCTTTGGGACGAGTGACGACTATACATTTATGGGAAAAT
AGACTTGTATATCTATTTTTGAGTCTCTGCCTGTGGGGTGGTGTGTTCGG
CTCTCTTTCGATGTTCTCATGCTGCCTATTGACGTACGGCGTGTTCTGAG
GTCAAATGCTGCCTCTTAACGCGCGGCGTGTTCTTGAGGTCTGCAGTGCC
GGCCGTACATCCGTGTCGTGGGAGTAGTTCAGAGGGCTTCTCACCGGTAA
ATAGTTTAATGATCGACTTGCTGTGGGCTTTTCTGTCTCCGTAGGTCGTT
TATGTGTGTACGGTGTGGACACGTTTCAGTAGCAGAACGGCAGTGGGGCG
GCCGTAGGCGTGTTGACAGGGTTTCAGGCGTCTGCTGCTGTGCGAGGGAG
GGCGGGTAGCGAAACTCACTACGCGGAGGGCACCAGTATGCGTGTCAAAG
CCATGGTGCAGCACCCCCACTGCATACAACAATATGCGTGTCGTTTATTT
CAGTGAGGTGTGCCTACCCTGTCTTGTGGTAAATATGGTTTTTGAAATAG
CAATCCATCACGAACACTTACCTGCAGGAAAAGCAAAGTGCACAATTCCT
ACACAAATCTCAAGTCAAACCCTTTGCCTTGATCTATTGGAAAATGTTTA
GGGTTTTGGCCTCTGGATCGCGTATTTTCGTGATTGAGACACCTCAGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10488:519..3767+

>mRNA_E-fasciculatus_F_contig10488.388.1 ID=mRNA_E-fasciculatus_F_contig10488.388.1|Name=mRNA_E-fasciculatus_F_contig10488.388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10488:519..3767+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCAAGCATCACTTTACAAGCTAGGGTCCCCGAGAAAGCTCTCTGG
GGAGGGCAACACCTGGGACATACTCTGGGCGCTGCATATAAACGGGGTCG
TTCATCAGATGCCGCAAGCATCACTTTACAAGCTAGGGTCCCCGAGAAAG
CTCTCTGGGGAGGGCAACACCTGGGACATACTCTGGGCGCTGCATATAAA
CGGGGTCGTTCATCAGGTATCGATGCAGAGGAGGCTCTCCCAAAAGATAG
TCGTGAAGCACGACGGGAAAACCTTGCTGGACAAGGTGTTCGTGTTGGCG
AAGCCTTACGAGGGCTACTGCCTGGTGGCCTGGGTCAACCAGGGGATCAG
TTTCGGGATATTCTGCACAACGGTATCGATGCAGAGGAGGCTCTCCCAAA
AGATAGTCGTGAAGCACGACGGGAAAACCTTGCTGGACAAGGTGTTCGTG
TTGGCGAAGCCTTACGAGGGCTACTGCCTGGTGGCCTGGGTCAACCAGGG
GATCAGTTTCGGGATATTCTGCACAACGGATTTGAGGTGCATCCAGACAA
ACGCCGATCACTACGATCTCCGCGTCAATGGGGTCAAGTTCACGGACATG
CCGGACGGCTGTCGGTTGAGGCAGATACAGCAAGATGTTGCTCTCCGGCG
GATTTGAGGTGCATCCAGACAAACGCCGATCACTACGATCTCCGCGTCAA
TGGGGTCAAGTTCACGGACATGCCGGACGGCTGTCGGTTGAGGCAGATAC
AGCAAGATGTTGCTCTCCGGCGGTCTGCTTCCGTTCCCAACATGTCCGGC
ACCCGCGCCGGTGACGCCTCCGGCGGCAATGGCCACAGCGGCACCAGCAG
CGGCGGGGCCGGCCGTAACAGAAGTGGCTCCGCGGCGGTGCCAGGGGCGA
AGGCTTTGGCGACACCGGCGGCTCCGGCCAAGGCCCACTCCATCTCCCGT
ATGACGACCTGAGTCTGCTTCCGTTCCCAACATGTCCGGCACCCGCGCCG
GTGACGCCTCCGGCGGCAATGGCCACAGCGGCACCAGCAGCGGCGGGGCC
GGCCGTAACAGAAGTGGCTCCGCGGCGGTGCCAGGGGCGAAGGCTTTGGC
GACACCGGCGGCTCCGGCCAAGGCCCACTCCATCTCCCGTATGACGACCT
GA
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