mRNA_E-fasciculatus_F_contig1558.3880.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1558.3880.1
Unique NamemRNA_E-fasciculatus_F_contig1558.3880.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1558.3880.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.520e-12
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = -1 
Query:  407 GRGSRQGVRGCEATVLEEWTELQRTMCLIPDTGRTVSQ 520
            G+G RQG+RGCEATV EEWTE QRTMCLIP+TGRTVSQ
Sbjct:  997 GKGFRQGIRGCEATVFEEWTERQRTMCLIPNTGRTVSQ 1034
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1558.3880.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.620e-10
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = -1 
Query:  407 HSTNGG---------RGSRQGVRGCEATVLEEWTELQRTMCLIPDTGRTVSQ 535
            H+ NGG         +G RQGVRGCE TV EEWTE QRTMCLIP+TGR VSQ
Sbjct: 1020 HNINGGNGREDDSSRKGFRQGVRGCETTVFEEWTERQRTMCLIPNTGRMVSQ 1071
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1558.3880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRN8_9PHAE7.520e-1284.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK33_ECTSI1.620e-1065.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1558contigE-fasciculatus_F_contig1558:15723..16257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1558.3880.1prot_E-fasciculatus_F_contig1558.3880.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1558 15858..16160 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.3587372-UTR-E-fasciculatus_F_contig1558:15722..158571622928031.3587372-UTR-E-fasciculatus_F_contig1558:15722..15857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1558 15723..15857 +
1695995795.759129-UTR-E-fasciculatus_F_contig1558:15722..158571695995795.759129-UTR-E-fasciculatus_F_contig1558:15722..15857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1558 15723..15857 +
1622928031.3815536-UTR-E-fasciculatus_F_contig1558:16160..162571622928031.3815536-UTR-E-fasciculatus_F_contig1558:16160..16257Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1558 16161..16257 +
1695995795.7882237-UTR-E-fasciculatus_F_contig1558:16160..162571695995795.7882237-UTR-E-fasciculatus_F_contig1558:16160..16257Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1558 16161..16257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.3707457-CDS-E-fasciculatus_F_contig1558:15857..161601622928031.3707457-CDS-E-fasciculatus_F_contig1558:15857..16160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 15858..16160 +
1695995795.776166-CDS-E-fasciculatus_F_contig1558:15857..161601695995795.776166-CDS-E-fasciculatus_F_contig1558:15857..16160Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 15858..16160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1558.3880.1

>prot_E-fasciculatus_F_contig1558.3880.1 ID=prot_E-fasciculatus_F_contig1558.3880.1|Name=mRNA_E-fasciculatus_F_contig1558.3880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MKTPQLVRVSPKANHFPRGTRFPICGPKTMHVWLETYVAGTLGMSTTTPA
KAQQVGQHQMPSPHRKVSFTIEPTRPSLLCPYEVALWRGLIEIQSSRCRG
*
back to top

mRNA from alignment at E-fasciculatus_F_contig1558:15723..16257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1558.3880.1 ID=mRNA_E-fasciculatus_F_contig1558.3880.1|Name=mRNA_E-fasciculatus_F_contig1558.3880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=535bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1558:15723..16257+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGACGTCTATTCATTGGCAAGCCCGTTTGCAGTGCGTCGATGCAAACAT
AATTCGCACAGACAGAGAGACGCAGCAGCCTCAGCGAACACGCTTGAGCA
TATGCTAGGAATATCCAGCGTGTGTCCCCGCCTCAATGAAAACGCCTCAA
CTTGTGCGTGTGTCCCCCAAGGCCAATCACTTCCCCCGTGGCACCAGATT
TCCGATATGTGGGCCTAAGACGATGCATGTGTGGCTTGAAACATATGTTG
CGGGTACCCTTGGTATGTCCACCACTACTCCAGCCAAAGCACAACAAGTG
GGGCAGCATCAGATGCCGTCTCCACACAGAAAGGTGAGTTTCACCATAGA
ACCAACTCGGCCTTCCCTGCTTTGTCCATATGAAGTAGCCCTCTGGCGTG
GCCTCATTGAGATACAGTCCTCCCGGTGTCGGGGATAAGGCACATCGTAC
GCTGCAGTTCGGTCCACTCCTCGAGCACTGTTGCCTCGCATCCCCGTACA
CCTTGGCGGGATCCTCTCCCACCGTTGGTGCTATG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1558:15723..16257+

>mRNA_E-fasciculatus_F_contig1558.3880.1 ID=mRNA_E-fasciculatus_F_contig1558.3880.1|Name=mRNA_E-fasciculatus_F_contig1558.3880.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1558:15723..16257+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAAACGCCTCAACTTGTGCGTGTGTCCCCCAAGGCCAATCACTTCCC
CCGTGGCACCAGATTTCCGATATGTGGGCCTAAGACGATGCATGTGTGGC
TTGAAACATATGTTGCGGGTACCCTTGGTATGTCCACCACTACTCCAGCC
AAAGCACAACAAGTGGGGCAGCATCAGATGCCGTCTCCACACAGAAAGGT
GAGTTTCACCATAGAACCAACTCGGCCTTCCCTGCTTTGTCCATATGAAG
TAGCCCTCTGGCGTGGCCTCATTGAGATACAGTCCTCCCGGTGTCGGGGA
TAAATGAAAACGCCTCAACTTGTGCGTGTGTCCCCCAAGGCCAATCACTT
CCCCCGTGGCACCAGATTTCCGATATGTGGGCCTAAGACGATGCATGTGT
GGCTTGAAACATATGTTGCGGGTACCCTTGGTATGTCCACCACTACTCCA
GCCAAAGCACAACAAGTGGGGCAGCATCAGATGCCGTCTCCACACAGAAA
GGTGAGTTTCACCATAGAACCAACTCGGCCTTCCCTGCTTTGTCCATATG
AAGTAGCCCTCTGGCGTGGCCTCATTGAGATACAGTCCTCCCGGTGTCGG
GGATAA
back to top