mRNA_E-fasciculatus_F_contig15557.3868.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15557.3868.1
Unique NamemRNA_E-fasciculatus_F_contig15557.3868.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.650e-50
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEE 282
            VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFD  E
Sbjct:  968 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDIAE 1061
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.380e-33
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQ 204
            VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITL++
Sbjct:  715 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLKR 782
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.750e-27
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEE 282
            V++QIL+G+VWEE+AL RAKQ+F Q HE  +KSLEG STE LM +MS GDSRF+S+P E +  +TLEQ   A+   L T  MEVSL GDF+  E
Sbjct:  689 VVNQILTGYVWEEDALNRAKQAFYQLHEASIKSLEGSSTEQLMAQMSSGDSRFLSVPHEAVRALTLEQVREAVMSQLTTDAMEVSLAGDFELAE 782
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A7S3XQN3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN3_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 1.770e-22
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            V+HQIL+GFVWEE+AL RAK  F Q+H+TL KSLEG +TE LM R++GGD  F+S+       +TL+Q   A+   L T  ++VS+ GD D  E+
Sbjct:    1 VVHQILTGFVWEEDALGRAKAGFQQTHDTLTKSLEGATTEALMARVAGGDPAFLSVGHATTRGLTLDQVREAVTAQLTTDALDVSICGDVDLAEL 95
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A7S1HIP4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIP4_HEMAN)

HSP 1 Score: 99.4 bits (246), Expect = 2.080e-22
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            V+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE  + E L++ M GGD+R++SIP E +E +TL+Q   A+   L T ++E+S+ GDFD  E+
Sbjct:  282 VVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKVEALTLDQVRSAVTSRLTTDNIELSVSGDFDPSEL 376
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A7S1HIF8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIF8_HEMAN)

HSP 1 Score: 99.4 bits (246), Expect = 3.010e-22
Identity = 45/95 (47.37%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            V+H +++ F WEE+AL+RAKQ+F+Q+HE + KSLE  + E L++ M GGD+R++SIP E +E +TL+Q   A+   L T ++E+S+ GDFD  E+
Sbjct:  743 VVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKVEALTLDQVRSAVTSRLTTDNIELSVSGDFDPSEL 837
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A6U0SKE1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SKE1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.660e-21
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            ++ +IL GF WEE+AL R KQS+  +HE++ KSLEG+STE +ME M+  D RF+SI  + +  +TLE A  A+   L  S +E+S+ GDFD +EV
Sbjct:  565 IVREILIGFHWEEDALGRGKQSYRTAHESMQKSLEGKSTEKIMESMTSQDDRFLSIDVDTVNAVTLEDAKNAVMSQLQPSDLEISVAGDFDQQEV 659
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.660e-21
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            +L +IL  F WEE+AL R+KQSF  +HE+L K+LEG++TE++ME M+G D RF+SI  + +  +TL++A  A+   L    +E+S+ GDFD  EV
Sbjct:  824 ILREILVDFHWEEDALGRSKQSFRSAHESLQKNLEGKTTEVIMEGMTGNDKRFLSIDVDTVNAVTLDEAKSAVMSQLLPPELEMSVAGDFDVSEV 918
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: A0A7S0CAA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAA1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.020e-21
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFD 273
            +L +I+ GF WEE+AL R+K SF  +HE L K+LEG +TE++ME M+G D RF+SI  + +  +TL+ A  A+   L+ S +EVS+VGDFD
Sbjct:   93 ILREIIIGFKWEEDALGRSKSSFRSAHEGLQKNLEGMTTELIMETMTGQDERFLSIDVDTVNAVTLDDAKNAVMSQLSPSELEVSVVGDFD 183
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Match: B8CCG1_THAPS (Stromal processing peptidase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG1_THAPS)

HSP 1 Score: 95.1 bits (235), Expect = 9.250e-21
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    1 VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV 285
            ++ +IL  F WEE+AL R+K S+  +HE+L KSLEG+STEM+M+ ++GGD RF+SI    +  +TLE A  A+   L  S +E+S+ GDF   EV
Sbjct:  674 IVREILIDFNWEEDALGRSKTSYRSAHESLGKSLEGKSTEMIMDNLAGGDKRFLSIDSRTVSEVTLEDAKNAVMSQLIPSELEISVAGDFVVNEV 768
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15557.3868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCY0_9PHAE2.650e-5097.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0R1_ECTSI1.380e-3397.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C760_9STRA7.750e-2758.51Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S3XQN3_HETAK1.770e-2250.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1HIP4_HEMAN2.080e-2247.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1HIF8_HEMAN3.010e-2247.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U0SKE1_9STRA2.660e-2148.42Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4HUK7_9STRA3.660e-2147.37Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CAA1_9STRA5.020e-2149.45Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8CCG1_THAPS9.250e-2147.37Stromal processing peptidase (Fragment) n=1 Tax=Th... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15557contigE-fasciculatus_F_contig15557:1704..2630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue8e-29
Seed eggNOG ortholog2880.D7G0R1
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.4436452-CDS-E-fasciculatus_F_contig15557:1703..18021622928029.4436452-CDS-E-fasciculatus_F_contig15557:1703..1802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15557 1704..1802 -
1695995795.2730613-CDS-E-fasciculatus_F_contig15557:1703..18021695995795.2730613-CDS-E-fasciculatus_F_contig15557:1703..1802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15557 1704..1802 -
1622928029.4597278-CDS-E-fasciculatus_F_contig15557:2444..26301622928029.4597278-CDS-E-fasciculatus_F_contig15557:2444..2630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15557 2445..2630 -
1695995795.284139-CDS-E-fasciculatus_F_contig15557:2444..26301695995795.284139-CDS-E-fasciculatus_F_contig15557:2444..2630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15557 2445..2630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15557.3868.1prot_E-fasciculatus_F_contig15557.3868.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15557 1704..2630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15557.3868.1

>prot_E-fasciculatus_F_contig15557.3868.1 ID=prot_E-fasciculatus_F_contig15557.3868.1|Name=mRNA_E-fasciculatus_F_contig15557.3868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
VLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGD
SRFMSIPQEDIEPITLEQASMAIEGHLATSHMEVSLVGDFDTEEV
back to top

mRNA from alignment at E-fasciculatus_F_contig15557:1704..2630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15557.3868.1 ID=mRNA_E-fasciculatus_F_contig15557.3868.1|Name=mRNA_E-fasciculatus_F_contig15557.3868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=927bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15557:1704..2630- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCTTCATCAAATTCTGTCTGGGTTCGTGTGGGAAGAGGAAGCCCTGAA
GCGGGCTAAGCAGTCCTTCCTGCAGTCCCACGAGACCCTGGTGAAGAGCC
TCGAGGGCAGGTCTACGGAGATGCTCATGGAGCGCATGTCCGGAGGCGAC
AGCCGGTTCATGTCCATCCCCCAGGAAGACATCGAGGTACTGCCTATCAA
AGTATACGTAAAATGGTTTTATTTTTTTTTTTGCGCATACTTTTGAGGGT
TTGAGTTGCTTGTTTTTTGTGCCAAGTCGTTTTGACGAGAAACTGCTGTA
TTTTCGTTTTTTTTCTCGCGTTGAAGAATTGAACCCGCTCCTTGTAACAA
GTGCAACACGCCCGTCTCTATTTCTTGTTTCACCCTTTTCTTTTGTAGGC
TGATGTTAAGAATCTGAAAGGTTCGCATTGCTCCTCGTGTTTTTGCCGAC
GACCCTTCGAAAAGGCTTGTATCATTTAAAGTAGGATCTTACCAACTACT
TTCTGTCGACGTTACTTTTCTGTTTCGGGTTCACTCGTCCCGTGTCGAAG
CCACTGAGGGCCAAACGTCATTTTTTTTTTTTTTTATGACCACTCTCTCT
CATGTTTCTCTCTTGTTTCAGGTTGAACAGTAACCGATACCATCCATCTG
AGAGTAGTGAGGTTGACTCTCAACACACTTCGGGTCGTGCTTGTTAAGTT
GATTACCAGAGTTGGTGTTGAAAACCATGAAATGCTTCCCCTCGTGTACA
GTCCCTCTCGTTCTCCCTTTGTTACATTCGTGTTCTCCCTCGTCACGTTC
GTGTTCCTTTTTTTTCCCCGTGCTTCAGCCAATCACCCTCGAGCAGGCCT
CTATGGCGATCGAGGGACACCTTGCCACGTCCCACATGGAGGTATCGCTC
GTCGGCGACTTCGACACCGAAGAGGTA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15557:1704..2630-

>mRNA_E-fasciculatus_F_contig15557.3868.1 ID=mRNA_E-fasciculatus_F_contig15557.3868.1|Name=mRNA_E-fasciculatus_F_contig15557.3868.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15557:1704..2630- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTCTTCATCAAATTCTGTCTGGGTTCGTGTGGGAAGAGGAAGCCCTGAA
GCGGGCTAAGCAGTCCTTCCTGCAGTCCCACGAGACCCTGGTGAAGAGCC
TCGAGGGCAGGTCTACGGAGATGCTCATGGAGCGCATGTCCGGAGGCGAC
AGCCGGTTCATGTCCATCCCCCAGGAAGACATCGAGGTTCTTCATCAAAT
TCTGTCTGGGTTCGTGTGGGAAGAGGAAGCCCTGAAGCGGGCTAAGCAGT
CCTTCCTGCAGTCCCACGAGACCCTGGTGAAGAGCCTCGAGGGCAGGTCT
ACGGAGATGCTCATGGAGCGCATGTCCGGAGGCGACAGCCGGTTCATGTC
CATCCCCCAGGAAGACATCGAGCCAATCACCCTCGAGCAGGCCTCTATGG
CGATCGAGGGACACCTTGCCACGTCCCACATGGAGGTATCGCTCGTCGGC
GACTTCGACACCGAAGAGGTACCAATCACCCTCGAGCAGGCCTCTATGGC
GATCGAGGGACACCTTGCCACGTCCCACATGGAGGTATCGCTCGTCGGCG
ACTTCGACACCGAAGAGGTA
back to top