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Homology
BLAST of mRNA_E-fasciculatus_F_contig15552.3865.1 vs. uniprot
Match: D7G9D4_ECTSI (Spherulin 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI) HSP 1 Score: 427 bits (1097), Expect = 1.470e-146 Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 1
Query: 7 VLDASFVFCSVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGDGGLKIIAPLLGSDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNNLATLEEVVETFTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQ 663
VL F +VRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGDGGLKIIAPLLG+DDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGN+LATLEEVVET+TFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQ
Sbjct: 146 VLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGDGGLKIIAPLLGNDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQ 364
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 663 |
| Cds size | 663 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15552.3865.1 >prot_E-fasciculatus_F_contig15552.3865.1 ID=prot_E-fasciculatus_F_contig15552.3865.1|Name=mRNA_E-fasciculatus_F_contig15552.3865.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp
MLVLDASFVFCSVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPF
VDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGD
GGLKIIAPLLGSDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDR
AAAVRDAGAKVLCYIEADKYGNNLATLEEVVETFTFFPLNEICGGFFFGA
FNILLAIEDMPGMQSLYLKTQ back to topmRNA from alignment at E-fasciculatus_F_contig15552:247..2986+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15552.3865.1 ID=mRNA_E-fasciculatus_F_contig15552.3865.1|Name=mRNA_E-fasciculatus_F_contig15552.3865.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2740bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15552:247..2986+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGTACTTGATGCTTCCTTTGTTTTTTGCAGCGTGAGGCAGCTCGG
AGTGCCCGAAACCAGCGACATCTCCACGCCGCCCCAGAACATGCTTCTCC
TGCACAGCGCCACCGAGCTGGCCGAGAAGCCTGAGGTACGCCTGCGATTG
GACTAACTGAAGGTCGTAATACGGTTCCTTTCTCGTCTCTTCTTGTCTTG
TCACAATTGATAATCTACTGCACCTTGTATGCTCTTCCCCTGCCTCCTCT
CTTTTCGTGTCCCATCACAAACTTCCCCCCCCCCTCCGCGCTTCCCCGTC
GCCACCGCCTCCTTGCTCGTTCTCTCTCCGGCCGTCAATCACCACAACAT
GACAGCTGATCCAACCCTTCGTGGACAAGGCCTACTGCAAGGGCTGGGGC
ACGGTGTACGTGACGGACGACCTCTTCGACGAGGTGCGTTCTTCTTTTTT
TTTATTGAAGTACTTGCGGTTCTTTGGTCGAAGCCTGTTGTACTGTTCGC
CGCGGCCATCGTCCTCCTCGTCGGTGTTAGTTTAGTCACCACTTTTACCG
ATGTCGTTATTGTTGCTGTCGTCACCGTGTACCCAAGGGTGTCTGTCGCC
AGCCTTGCATCAAAACCCGTCGCCAGCCCACCTTCTTGTCCCCAGCGCTG
AGAATGTCCGATTCATCGTCCGGCCTCATCTCGTCTCCTCTAGCTGTCGT
TGCCGTGCCCCGAGGGTGTCTTTCCCCTCCCCAGCTCCGCATTAAAACCC
GGCCGACTGACGCCCTAAGGAAATGTTCGACTTACCGTCTTGACGCCTTC
CTCTGCAGGGCAACCCTTGGGACAACCCGCCGACCTTCTGGACAGCCTTC
ATCGAGGCCTCGAGGAACATCCCCACGGTGGAGTCCTGCGGCGACGGCGG
CCTCAAGATCATCGCCCCGCTCCTCGGCAGTGACGACGCCGGTGAGCGAT
AACACGGAAACTTTCCCTACCCTGGAACCCTTTTTTTTCTCTCAGTTTTT
TCAGAGAATGTCGGGAAAACATCAGAGCATTCGAAGCTGGCGAGGGACAA
CACGACAAAACTTTTTTTTTCTTTCGATTTTTGCAAGAAATATCGGGGGG
ATGTCAAAGCATCCGAAGTCGGGGAGTGTCAACGTGACAACTTACCTTGG
GACTTCGCGCGCGAAGTTTGGAAAGGGTCTCTATTCCGTTAGATTGTTTG
TTTGTTTGTTTTTTCCCCGCGAAGAATGCCGTATTTTTCGCAAAGATTAG
AAAAGGAAACTTGCGAATATCGCTGGTTGGTCTCTTCGTACCGCCGTCGA
TTATATCATGTGGGTGAAATACACGTTCGTACACACCATGCTCCTTTTAT
TTGTGCTTGTTGCCTTGTTCGTTTTGTGGGGAAGGGTGTTCTTGAACCGT
GTTCGGGGCGCAAGCCATCCGTCGTATTTTATGTGCGCACTTCACTCCAC
GCGTTTTCTGTCGGCGAAAACCAACCTCCATCCCGCCCCCCCTGTCGTGT
GCTGCTCCTTTTTTTCTCTCCCCCTTCGGCAGACACGGAGGCCATCATGG
CCACCGCCGACCCGGGAGACTACGGCGACAGGATCATGGTCGCCATGAAC
GTCGAGATTACCGAGACCGGCGAGTCTACCGACAGGGCTGCCGCCGTCAG
GGACGCAGGGGCCAAGGTAAAGAGTTATATATATATTTTTTTTTATTGCT
CAAAATCAGATGTTTGTTTATTTATTTATTCATTCATTTTTATGGCTTTA
CATCAGCGCTCACGGCTTTTCTGGCGGGTAGGAGCTCCAACCTGTCGTTA
CAAGAAAAAGCAAAACGAAACAGTGAAAGAAGTAGACCGTTTTGGGCACA
AATCAACCGAAATCTTGCAGGGTGGCAACGTCACAGCTCTGTGGGATGCT
TGCCCCATCCCGCGTCGTCGTTTTCGATTTCCGTCAAGCTTATTGTCGAT
TGATGACATGAATTAGCTCCTTTTGTGTGTTGTGCTCTAGTGCACTGGGG
TCCGGCTTGAAGGTTTGGAGCCCGGCTCGTACAGTAGTCGCTCTATTGTA
GTCTACACCAGCCGTATGCTGCATGTGACCGCCTTCGTCGGTTGGCTTGA
GTTTCGCGTGTGTTTGTCTTGAACCAGAACATCTTGAAGTGTAGTTTGAT
TCAACTGGATGGCGTTGTTCTATTTCGTCGTGCTTCTTGTTGGTCGGAGG
AACAAAACGATCGTGTGTCACGTGCAGTTGTTTGTTCACTCATGCTCCGA
TATTTTTTCTTGTACCGCTTCCAGTTGCCACATTGACCCAACCCCGCTGT
GTTCGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTA
GGGATGCGAGGTCAATGATCTAATGACTACGGCATGCACGACTATGAGTA
CCCCCCCGTCCCGCTGTGTTCCTCGGCTCGAACGGAACACGTAACACGCA
CACAAAGCTGAGTTAAGTCCCTCTTCGGCCGGCCGGATCGTTGCCCATGC
TGTCTGTCGCCTGCGCCCCCCCCTTCTTCCTCGTGTGTCGCCTTCTTGCC
CCATAAGGTGCTCTGCTACATCGAGGCTGACAAGTACGGCAACAACCTGG
CCACCCTCGAGGAGGTCGTGGAGACGTTCACCTTCTTCCCCCTCAACGAG
ATCTGCGGCGGTTTCTTCTTCGGGGCCTTCAACATCCTGCTGGCCATCGA
GGACATGCCCGGCATGCAGTCCCTCTACCTCAAGACCCAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15552:247..2986+ >mRNA_E-fasciculatus_F_contig15552.3865.1 ID=mRNA_E-fasciculatus_F_contig15552.3865.1|Name=mRNA_E-fasciculatus_F_contig15552.3865.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15552:247..2986+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTGTACTTGATGCTTCCTTTGTTTTTTGCAGCGTGAGGCAGCTCGG
AGTGCCCGAAACCAGCGACATCTCCACGCCGCCCCAGAACATGCTTCTCC
TGCACAGCGCCACCGAGCTGGCCGAGAAGCCTGAGATGCTTGTACTTGAT
GCTTCCTTTGTTTTTTGCAGCGTGAGGCAGCTCGGAGTGCCCGAAACCAG
CGACATCTCCACGCCGCCCCAGAACATGCTTCTCCTGCACAGCGCCACCG
AGCTGGCCGAGAAGCCTGAGCTGATCCAACCCTTCGTGGACAAGGCCTAC
TGCAAGGGCTGGGGCACGGTGTACGTGACGGACGACCTCTTCGACGAGCT
GATCCAACCCTTCGTGGACAAGGCCTACTGCAAGGGCTGGGGCACGGTGT
ACGTGACGGACGACCTCTTCGACGAGGGCAACCCTTGGGACAACCCGCCG
ACCTTCTGGACAGCCTTCATCGAGGCCTCGAGGAACATCCCCACGGTGGA
GTCCTGCGGCGACGGCGGCCTCAAGATCATCGCCCCGCTCCTCGGCAGTG
ACGACGCCGGGCAACCCTTGGGACAACCCGCCGACCTTCTGGACAGCCTT
CATCGAGGCCTCGAGGAACATCCCCACGGTGGAGTCCTGCGGCGACGGCG
GCCTCAAGATCATCGCCCCGCTCCTCGGCAGTGACGACGCCGACACGGAG
GCCATCATGGCCACCGCCGACCCGGGAGACTACGGCGACAGGATCATGGT
CGCCATGAACGTCGAGATTACCGAGACCGGCGAGTCTACCGACAGGGCTG
CCGCCGTCAGGGACGCAGGGGCCAAGACACGGAGGCCATCATGGCCACCG
CCGACCCGGGAGACTACGGCGACAGGATCATGGTCGCCATGAACGTCGAG
ATTACCGAGACCGGCGAGTCTACCGACAGGGCTGCCGCCGTCAGGGACGC
AGGGGCCAAGGTGCTCTGCTACATCGAGGCTGACAAGTACGGCAACAACC
TGGCCACCCTCGAGGAGGTCGTGGAGACGTTCACCTTCTTCCCCCTCAAC
GAGATCTGCGGCGGTTTCTTCTTCGGGGCCTTCAACATCCTGCTGGCCAT
CGAGGACATGCCCGGCATGCAGTCCCTCTACCTCAAGACCCAGGTGCTCT
GCTACATCGAGGCTGACAAGTACGGCAACAACCTGGCCACCCTCGAGGAG
GTCGTGGAGACGTTCACCTTCTTCCCCCTCAACGAGATCTGCGGCGGTTT
CTTCTTCGGGGCCTTCAACATCCTGCTGGCCATCGAGGACATGCCCGGCA
TGCAGTCCCTCTACCTCAAGACCCAG back to top
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