mRNA_E-fasciculatus_F_contig15550.3864.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15550.3864.1
Unique NamemRNA_E-fasciculatus_F_contig15550.3864.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: D8LJC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC2_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 5.990e-67
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1
Query:    1 FQVLEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQDTLPG 324
            +QVLEEALHVTAGSGTGVAA GNPAYVLSRLSVLSEDDFMSAF+YAGGGGYPA RDWA DLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQD LPG
Sbjct:  246 YQVLEEALHVTAGSGTGVAAGGNPAYVLSRLSVLSEDDFMSAFDYAGGGGYPAGRDWAADLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQDALPG 353          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A6H5KZ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ36_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 5.900e-63
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 1
Query:    7 VLEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQDTLPG 324
            VLEEALHVTAGSGTG AA GNPAYVLSRLSVLSEDDFMSAF+YAGGGGYPA RDWA DLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQD LPG
Sbjct:  478 VLEEALHVTAGSGTGFAAGGNPAYVLSRLSVLSEDDFMSAFDYAGGGGYPAGRDWAADLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAPSSQDALPG 583          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: K3X6G3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6G3_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 6.430e-12
Identity = 32/97 (32.99%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   10 LEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAP 300
             ++ L+V   + T  ++     YVL RL +LS+D  +  + ++ G  +   ++W+  LP+DA I+M +F C  D +LP D E DRPF + +F+ + P
Sbjct:  353 FDKYLNVGDPNSTEYSSLERQQYVLERLIMLSKDRSLDRYRWSKGSTWKG-KEWSDSLPSDAEILMNVFCCMMDNMLPADSERDRPFWKSYFLSKGP 448          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A8K1FML5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML5_PYTOL)

HSP 1 Score: 70.1 bits (170), Expect = 8.790e-12
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   10 LEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAP 300
             E+ L+V   +G   ++     YVL RL +LS+D  +  F +  G  +   ++W   LP+DA I+M +F C  D LLP D   DRPF + +F+ +AP
Sbjct:  357 FEKYLNVGDATGAEYSSLERQQYVLERLIMLSKDRNLDRFRWNKGSTWKG-KEWTEALPSDAEILMNVFSCILDNLLPADTGRDRPFWKSYFMGKAP 452          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A5D6XQQ7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQQ7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-11
Identity = 31/97 (31.96%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   10 LEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAP 300
             ++ L+V   + T  ++     YVL RL +LS+D  +  + +  G  +   ++W+  LP+DA ++M +F C  D +LP D E DRPF + +F+ + P
Sbjct:  346 FDKYLNVGDPNSTEYSSLERQQYVLERLIMLSKDRSLDRYRWNKGSAWKG-KEWSESLPSDAEVLMNVFCCMMDNMLPADSERDRPFWKSYFLGKGP 441          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A024G5M2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5M2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.040e-11
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   10 LEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDR 294
             E+ L V   S T   +     YVL RL +LS+D  ++ + +  G  +   + W   LP+DA I+M +F C  D LLP D E DRPF + +F+++
Sbjct:  344 FEKYLKVGDPSSTEYVSLDRQQYVLERLILLSKDRNLNRYRWKSGFSWKG-KQWTESLPSDAEILMNVFCCMLDNLLPADNERDRPFWKSYFLNK 437          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: F0WVF4_9STRA (Uncharacterized protein AlNc14C295G10296 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVF4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.690e-10
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   10 LEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDR 294
             E+ L V   S T  A+     YVL RL +LS+D  ++ + +  G  +   + W   LP+D  I+M +F C  D LLP D E DR F + +F+++
Sbjct:  345 FEKYLKVGDPSSTAYASLDRQQYVLERLILLSKDRNLNRYRWNSGFSWKG-KQWTESLPSDTEILMNVFCCMLDNLLPADNERDRSFWKSYFLNK 438          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A835YPT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.420e-9
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 FQVLEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLL---PRDWEEDRPFARQFFVDRAPSS 306
            +Q LE  L V+A          +P YV  RL  L+ D  +    + GGG + A   W+P LPTDA +VM +FVC  ++LL   P +  +  PFA +F+ D  P++
Sbjct:  135 YQDLERVLLVSA----------DPGYVYERLQQLAADAQLGGVRWDGGGAH-AGAPWSPALPTDAELVMHVFVCRCNELLARTPAERLDGAPFASRFY-DEVPAA 227          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: UPI0014028707 (transmembrane protein 209 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014028707)

HSP 1 Score: 61.2 bits (147), Expect = 1.130e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   67 NPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRD--WEEDRPFARQFFVDRAPSSQDT 315
            N  Y++ R+  L+    MS+F + GGG Y  SR W  DLPTD+AI+M++F    D  LP    + + + F  Q F+ + P   DT
Sbjct:  403 NQEYLVERIKELAHGGCMSSFRWNGGGDYK-SRKWDTDLPTDSAIIMRMFCTYLDSRLPPHPKYPDGKTFTSQHFI-QTPDKPDT 485          
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Match: A0A1B6FSW8_9HEMI (Uncharacterized protein n=3 Tax=Proconiini TaxID=565685 RepID=A0A1B6FSW8_9HEMI)

HSP 1 Score: 55.5 bits (132), Expect = 1.200e-6
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   67 NPAYVLSRLSVLSEDDFMSAFEYAGGGGYPASRDWAPDLPTDAAIVMKLFVCCSDKLLPR-DWEEDRPFARQFFV 288
            N  Y++SR+  L+    MS + + GGG +   ++WAP LPTDAA+V+ L     D  LP+    + RPF+    V
Sbjct:  370 NQEYLVSRIKELARGGCMSEYRWNGGGVW-GGKEWAPPLPTDAALVLHLLATYLDCQLPQTSLPDSRPFSSHHLV 443          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15550.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LJC2_ECTSI5.990e-6794.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ36_9PHAE5.900e-6394.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3X6G3_GLOUD6.430e-1232.99Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FML5_PYTOL8.790e-1236.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XQQ7_9STRA1.630e-1131.96Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024G5M2_9STRA3.040e-1135.79Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WVF4_9STRA2.690e-1034.74Uncharacterized protein AlNc14C295G10296 n=1 Tax=A... [more]
A0A835YPT6_9STRA9.420e-936.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00140287071.130e-837.65transmembrane protein 209 n=1 Tax=Amblyraja radiat... [more]
A0A1B6FSW8_9HEMI1.200e-637.33Uncharacterized protein n=3 Tax=Proconiini TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15550contigE-fasciculatus_F_contig15550:1852..2995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue6.2e-54
Seed eggNOG ortholog2880.D8LJC2
Preferred nameTMEM209
GOsGO:0006810,GO:0006897,GO:0006909,GO:0008150,GO:0016192,GO:0051179,GO:0051234,GO:0098657
EggNOG free text desc.Cytochrome B561, N terminal
EggNOG OGsKOG4670@1,KOG4670@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.1365886-CDS-E-fasciculatus_F_contig15550:1851..20001622928029.1365886-CDS-E-fasciculatus_F_contig15550:1851..2000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15550 1852..2000 +
1695995795.1325705-CDS-E-fasciculatus_F_contig15550:1851..20001695995795.1325705-CDS-E-fasciculatus_F_contig15550:1851..2000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15550 1852..2000 +
1622928029.1527503-CDS-E-fasciculatus_F_contig15550:2820..29951622928029.1527503-CDS-E-fasciculatus_F_contig15550:2820..2995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15550 2821..2995 +
1695995795.1438754-CDS-E-fasciculatus_F_contig15550:2820..29951695995795.1438754-CDS-E-fasciculatus_F_contig15550:2820..2995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15550 2821..2995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15550.3864.1prot_E-fasciculatus_F_contig15550.3864.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15550 1852..2995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15550.3864.1

>prot_E-fasciculatus_F_contig15550.3864.1 ID=prot_E-fasciculatus_F_contig15550.3864.1|Name=mRNA_E-fasciculatus_F_contig15550.3864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
FQVLEEALHVTAGSGTGVAAWGNPAYVLSRLSVLSEDDFMSAFEYAGGGG
YPASRDWAPDLPTDAAIVMKLFVCCSDKLLPRDWEEDRPFARQFFVDRAP
SSQDTLPG
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mRNA from alignment at E-fasciculatus_F_contig15550:1852..2995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15550.3864.1 ID=mRNA_E-fasciculatus_F_contig15550.3864.1|Name=mRNA_E-fasciculatus_F_contig15550.3864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15550:1852..2995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGGTTCTGGAGGAGGCGTTGCATGTAACCGCCGGCTCCGGCACCGG GGTCGCCGCGTGGGGGAACCCGGCGTACGTGCTGTCCCGCCTGAGCGTGC TGTCGGAGGACGACTTCATGTCCGCCTTCGAGTACGCCGGGGGAGGCGGG TGAGGAAATAGCTTCCAGGAAAACTCTTTCGTGCTCAATTTCTGGTCGCA AGGAGAAATCTAAAATATTTGTGTGTTGAAATTCCATAATTTCTGACCAT CTCTGGCTGAGCGTGCTGTCCGATGACGACTTCATGTCCACGTTCGCATA CGCCGGGGGAGGCGGGCGAGGAAAATTCCTAGAATGTCATTGGCGTAAGA ATTGTGGAATTTCTGCTGACCATCTCGAGGGTGAGGTCATTTGGTAGTAA ATTCTTTCACACAATTTCTGACCGTTGCCTTCACCTCAGTGCTCACAGCA CTTGTGTGCCGTTTTACTCAATCCAACCCGTCGTCACACAGAAGGGTGCC GTTCCTCTCCTTGAGGCCCCCTACGGGCCCCTCCCGTTGTTCCGTGTAGG GATGCGAGGGCAATGGTGTCATGACTGCGGCATGCCCCCCCCCCGGCCCT GCTGCCTCCTTGTCTTTTTTTTGTCCTCACTTCAAATCAGAAGTCACAGC ATTTGTGCCGTTTTACTCTAACCTGCCGTCACACAGAAGAATTCCTCCCC CTGAGGCCCCCTACGGGCCCCTCCCGTTGTTCCGTGTGGGATGCGAGGGC AATGGTGTCATGACTGCGGCATGCATGGCTATGAATATATTCCCCCCCGG CCCTGCTGGTAACCCCCCCTCCCCCCGGCCCTGCTGCCTCTTTTTTTTTA TTGTCCTCACTTCAAATCAGCGCTGACAGTTATTGTGCCTTTTACTCCAA CCCGTGGTCACACTGAAGGGTTGCTCTCTACCCACCCCTCCTGCGTTGAT GTGTCTGTAATCCATATAGGTACCCGGCAAGCCGGGACTGGGCCCCCGAC CTTCCGACGGACGCGGCGATCGTGATGAAGCTCTTCGTGTGCTGCAGCGA CAAGCTCCTGCCCAGGGATTGGGAGGAGGACAGGCCCTTCGCTAGACAGT TTTTCGTCGACAGAGCACCCTCGAGTCAAGATACCCTCCCCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15550:1852..2995+

>mRNA_E-fasciculatus_F_contig15550.3864.1 ID=mRNA_E-fasciculatus_F_contig15550.3864.1|Name=mRNA_E-fasciculatus_F_contig15550.3864.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15550:1852..2995+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCAGGTTCTGGAGGAGGCGTTGCATGTAACCGCCGGCTCCGGCACCGG
GGTCGCCGCGTGGGGGAACCCGGCGTACGTGCTGTCCCGCCTGAGCGTGC
TGTCGGAGGACGACTTCATGTCCGCCTTCGAGTACGCCGGGGGAGGCGGT
TCCAGGTTCTGGAGGAGGCGTTGCATGTAACCGCCGGCTCCGGCACCGGG
GTCGCCGCGTGGGGGAACCCGGCGTACGTGCTGTCCCGCCTGAGCGTGCT
GTCGGAGGACGACTTCATGTCCGCCTTCGAGTACGCCGGGGGAGGCGGGT
ACCCGGCAAGCCGGGACTGGGCCCCCGACCTTCCGACGGACGCGGCGATC
GTGATGAAGCTCTTCGTGTGCTGCAGCGACAAGCTCCTGCCCAGGGATTG
GGAGGAGGACAGGCCCTTCGCTAGACAGTTTTTCGTCGACAGAGCACCCT
CGAGTCAAGATACCCTCCCCGGGGTACCCGGCAAGCCGGGACTGGGCCCC
CGACCTTCCGACGGACGCGGCGATCGTGATGAAGCTCTTCGTGTGCTGCA
GCGACAAGCTCCTGCCCAGGGATTGGGAGGAGGACAGGCCCTTCGCTAGA
CAGTTTTTCGTCGACAGAGCACCCTCGAGTCAAGATACCCTCCCCGGG
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