mRNA_E-fasciculatus_F_contig1554.3856.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1554.3856.1 vs. uniprot
Match: D7FWA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA7_ECTSI) HSP 1 Score: 283 bits (723), Expect = 1.570e-84 Identity = 140/188 (74.47%), Postives = 160/188 (85.11%), Query Frame = 1
Query: 1393 VATGSWWVL--QGPLSVPCGRASLASGEGPITVGQCLESEGGSRYLGWVPGMAWKARLTVTEDGAVYSGSDGQEVPFSAVLGEKKN-------GDDSGQEG--GMLCSAERMVRRAVPFVGTAEHRARMRGKSLVVGGGIFCHTHATPRPPPKSVLDALFRGRGGGIAIFSEHTGDLQVVNSRGEVVW 1923
VA G+W VL QGPLSVPCGR SLASGEGP+ VG+C+ESEGGSRYLGWVPG++WKARLTVT+DGAVYSG+DG+EVPFSAVLG+ + GD +GQ+G GMLCSAER+VRRAVPF+G EHRARMRG+ LVVG G FC TH TPR PP+SV+DALFRGRGGG+A FSEHTGDL VVNSRG+VVW
Sbjct: 261 VAVGTWPVLLLQGPLSVPCGRTSLASGEGPMAVGECVESEGGSRYLGWVPGVSWKARLTVTDDGAVYSGTDGKEVPFSAVLGKGMSSNGGDGGGDGNGQDGAGGMLCSAERLVRRAVPFIGDFEHRARMRGEKLVVGRGFFCRTHETPRRPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVVW 448
BLAST of mRNA_E-fasciculatus_F_contig1554.3856.1 vs. uniprot
Match: A0A6H5JF69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF69_9PHAE) HSP 1 Score: 294 bits (752), Expect = 1.590e-84 Identity = 164/246 (66.67%), Postives = 187/246 (76.02%), Query Frame = 1
Query: 1390 VVATGSWWVL--QGPLSVPCGRASLASGEGPITVGQCLESEGGSRYLGWVPGMAWKARLTVTEDGAVYSGSDGQEVPFSAVLGEKKNGDDS-------GQEG--GMLCSAERMVRRAVPFVGTAEHRARMRGKSLVVGGGIFCHTHATPRPPPKSVLDALFRGRGGGIAIFSEHTGDLQVVNSRGEVVWSVGDNTS---------SXXXXXXXXXXNPAEGRARWWRRGWGKKKKRDGSEKTGGWG 2067
VVA G+W VL QGPLSVPCGR SLASGEGP+ VG+C+ESEGGSRYLGWVPG++WKARLTVT DGAVYSG+DG+EVPFSAVLG+ +GD GQ+G GM CS ER+VRRA+P +G +H ARM G+ LVVG G FC THATPRPPP+SV+DALFRGRGGG+A FSEHTGDL VVNSRG+V WS GD+ S XXXXXXXXXX RWWRRGWGKK D +E+T WG
Sbjct: 621 VVAVGTWSVLLLQGPLSVPCGRTSLASGEGPMAVGECIESEGGSRYLGWVPGVSWKARLTVTTDGAVYSGTDGKEVPFSAVLGKDLSGDGGDGXXXXXGQDGARGMFCSMERLVRRALPIIGDFDHHARMSGERLVVGRGFFCRTHATPRPPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVEWSAGDDVSIISDSAGSTXXXXXXXXXXXXXXXXXXRWWRRGWGKK---DLAEETSSWG 863
BLAST of mRNA_E-fasciculatus_F_contig1554.3856.1 vs. uniprot
Match: D8LF92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF92_ECTSI) HSP 1 Score: 279 bits (714), Expect = 9.960e-79 Identity = 138/192 (71.88%), Postives = 157/192 (81.77%), Query Frame = 1
Query: 1393 VATGSWWVL--QGPLSVPCGRASLASGEGPITVGQCLESEGGSRYLGWVPGMAWKARLTVTEDGAVYSGSDGQEVPFSAVLGEKKNGDDSGQE---------GGMLCSAERMVRRAVPFVGTAEHRARMRGKSLVVGGGIFCHTHATPRPPPKSVLDALFRGRGGGIAIFSEHTGDLQVVNSRGEVVWSVGD 1935
VA G+W VL QGPLSVPCGR SLASGEGP+ VG+C+ESEGGSRYLGWVPG++WKARLTVT+DGAVYSG+DG+EVPFSAVLG+ +G+ GGMLCSAER+VRRAVPF+G EHRARMRG+ LVVG G FC TH TPR PP+SV+DALFRGRGGG+A FSEHTGDL VVNSRG+VVW D
Sbjct: 724 VAVGTWPVLLLQGPLSVPCGRTSLASGEGPMAVGECVESEGGSRYLGWVPGVSWKARLTVTDDGAVYSGTDGKEVPFSAVLGKDLSGNGGDXXXXXXXQDGAGGMLCSAERLVRRAVPFIGDFEHRARMRGEKLVVGRGFFCRTHETPRRPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVVWEGND 915 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1554.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1554.3856.1 >prot_E-fasciculatus_F_contig1554.3856.1 ID=prot_E-fasciculatus_F_contig1554.3856.1|Name=mRNA_E-fasciculatus_F_contig1554.3856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=690bp AAVVGAAVVGTAAVGAVAPAVVVAEATSPRCEVAELDSGAGPVPQGRGMAback to top mRNA from alignment at E-fasciculatus_F_contig1554:11314..17466- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1554.3856.1 ID=mRNA_E-fasciculatus_F_contig1554.3856.1|Name=mRNA_E-fasciculatus_F_contig1554.3856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1554:11314..17466- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1554:11314..17466- >mRNA_E-fasciculatus_F_contig1554.3856.1 ID=mRNA_E-fasciculatus_F_contig1554.3856.1|Name=mRNA_E-fasciculatus_F_contig1554.3856.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1554:11314..17466- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |