mRNA_E-fasciculatus_F_contig15531.3854.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15531.3854.1
Unique NamemRNA_E-fasciculatus_F_contig15531.3854.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15531.3854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15531contigE-fasciculatus_F_contig15531:149..2796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size319
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15531.3854.1prot_E-fasciculatus_F_contig15531.3854.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15531 149..2796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928028.0171728-CDS-E-fasciculatus_F_contig15531:148..2431622928028.0171728-CDS-E-fasciculatus_F_contig15531:148..243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 149..243 +
1695995794.6733503-CDS-E-fasciculatus_F_contig15531:148..2431695995794.6733503-CDS-E-fasciculatus_F_contig15531:148..243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 149..243 +
1622928028.0319664-CDS-E-fasciculatus_F_contig15531:992..10641622928028.0319664-CDS-E-fasciculatus_F_contig15531:992..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 993..1064 +
1695995794.6841698-CDS-E-fasciculatus_F_contig15531:992..10641695995794.6841698-CDS-E-fasciculatus_F_contig15531:992..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 993..1064 +
1622928028.0465586-CDS-E-fasciculatus_F_contig15531:1528..16001622928028.0465586-CDS-E-fasciculatus_F_contig15531:1528..1600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 1529..1600 +
1695995794.6951787-CDS-E-fasciculatus_F_contig15531:1528..16001695995794.6951787-CDS-E-fasciculatus_F_contig15531:1528..1600Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 1529..1600 +
1622928028.073689-CDS-E-fasciculatus_F_contig15531:2717..27961622928028.073689-CDS-E-fasciculatus_F_contig15531:2717..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 2718..2796 +
1695995794.7040668-CDS-E-fasciculatus_F_contig15531:2717..27961695995794.7040668-CDS-E-fasciculatus_F_contig15531:2717..2796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15531 2718..2796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15531.3854.1

>prot_E-fasciculatus_F_contig15531.3854.1 ID=prot_E-fasciculatus_F_contig15531.3854.1|Name=mRNA_E-fasciculatus_F_contig15531.3854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
SLNNNRLTTAIFSWLDDNGQPLLGGMHDLERLDLRRNSLENVPAGAFDSL
SALQTLNLYYCGVTSLEADAFLGLEALVYLGIGLGNSLGHLPAGAFNGLS
ALRKL*
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mRNA from alignment at E-fasciculatus_F_contig15531:149..2796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15531.3854.1 ID=mRNA_E-fasciculatus_F_contig15531.3854.1|Name=mRNA_E-fasciculatus_F_contig15531.3854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15531:149..2796+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCTAAACAACAACCGCCTGACGACCGCTATCTTCTCGTGGCTGGATGA
CAACGGCCAGCCTCTTCTAGGCGGGATGCACGACCTAGAACGCCTGTGAG
TACTCACATTTTGATTATCATCACGTTGTTTCATCACCAAATTACAGTAG
CCTTCGGGAAGGTATTGATCTTGGTTTTAGTATTTGGGGTGGTGGGTTCG
TTTTATTTAGGGATAGGAATACTAAATGCCCTCTATATTTCATAGATAAA
CGATCAGACCTTGCCAAGGCAGTCCTAAGTCCCATAGGTAGGTCGCTGAC
CTCACTCTCTAGTTTAGCGTTATTCGTGCACTGTAAAACTTGTGACCCGT
CCCGGTTGTTGCCAATTCCTGTACTGATGCGTAATATAACAGCGGGAATT
CGAAGTGCGACAGACATACCACTTTGGCTTGTGCGGTTTGCTTTCACGGA
TGCTGCTGATACGCAGCGAAGTCCTTGGCCGGGATATGGTAGATCCTCCT
GGTTTCACGGCGAATCTGATGGTTGAACTAAATCTTGTCGACCATGACGC
CCTCGGCAGTCGCGTCGCGACCGGCCGATTCCGCGTCGTATCCTTTGATT
GAAAGCATTCTCGGTCCTGACGCATCCGTCAGTCCACGCCGTGAGGTGCA
AGAATTGAGTCCGAATGGATCGTTGATTCACGCCTGCCACACGTCTACAG
GTCCAAAATGCTACGCTACAGGGATGAAAGATGCGGATTCTTCTCCTCTC
TCTTTCTCTCGCTCACACACACACACTCGCTCAATCGACGACAATAACGT
TCTATTATTGGAGCTGATCGTCAAATTTAACGTATTGTTTACAGGGACTT
GCGCAGAAATTCGCTGGAAAACGTGCCGGCCGGAGCGTTCGACAGCCTGT
CTGCGCTCCAAACATTGTAAGTATCTCCGAATACGTCTGACGTTGCTGTG
AGCCTCGCAGCGAAACGCTTGGGTGGTGCTTGACGTGCGTTCGATGCGTC
CAATCTTCGTAAAAGTGGACTTGGCCTTGAGAATTAACCAAGGTCGTTCA
GTCAGTCAGTGCGGAGTCTGCGGATTGGTGTCTCGAAAGAACCCTTGATA
AGTGATGGCGAAGCTTGTCACGGGTAGTCTCGCAGATGATTTGATTGTGG
ACAAGTGGCGCAATGCGTCTCGGCGTGTGTAGGCGTAACCATCGAGCACC
TCTTGCGCTTTTCCGCCCCAGCCTTTTTGTCGTTGAAGGCGAATCTGTGG
GTGGCTATTTTGTTTTGTACGGCATTCTACATCAAATACACATAGTTCAT
GGGCATACGACATACAAATGCCTCTTGGACTGCAACACCGGTTTTTCCTG
CATTGGTGGCGGTCCGCACTCTCGTGACAGGAACCTCTACTACTGCGGCG
TGACATCCCTGGAGGCCGACGCCTTCCTGGGCCTCGAGGCTCTCGTTTAT
CTGTGAGCGGGCTAGAACCATTGTTATATATGTTCTATATACATAGTCCT
ATTTATTTTTTCCATCTCTTGAAATCGGCGCTCACACACCACGAACATTT
TGCCTGGTAGGTGCTCCTCGTAGACCGTGCGCATCAATTTACAGTAGTAG
GTGTGCATGTATCCACGCCTTTGCTCGTAGGACACACCCGCACTCCGAAT
GGTTTACTAAGCATAGCAATCGGGTGCCTCGCTGGGCACTTGTACGTAGT
ATCATACCTTGTTGGCAGACTTGAGGGCGCTCGTGTGCAGCACCACTGCC
TCTCCAAAACCGGATAATATATCACGTTGAATATGGATATTTACCATAAA
AAAGTTTAGTCTACACGAGGTGGGGAGGGAGAGGAGCTCTCCTGTGACCA
CGGGTCGGAGCTCATAACCGGCAGCAATGCTGTGTGAGCACAGGTATTAA
GTGTGATGAGTAGTAGTTAGCATGAAAAAGCGCTCCATACGTATCTGATT
GCAATGGTCGAAGGTGGAGATGAGTGTTGCTTGTGTTCCCTCCTCGGCCT
TGCTTCTGACTAAAGGGTCTCAGTCTTTCTCCACATGCGCAGACTTTTTG
CTGGTGCCGTTTACCTTCAACGACATGGCCTTCGCGGGTAGGCAATCGCT
GTAGAACAAAACGAGGCCGGTAGTTGAGGACACAGCGTCGTGTCTGTTGG
GCGAATGGAGCTCCTGGCTCGACGTGCCTACAGCAGTCTGCACTTTCTCA
TTCTCGCGAGCCAGCCCTGTGTTATGCCTTGGTGGTCTGTGGAGGTGGGA
CTAGCTTTCCAAATATTAATTTGCATCGTAGTCCCCGGGCGCCTTCAGCA
GTGTTTCGCATAGAGGCCCTTCGTCCATGCTTTATCGCTACCTGAAACGA
GTCTTTTACTGCTTCTGAGTGCCTTCCCCTATCCTTTTCCCTTTCCTTGC
TCTATATCGGCGGTCCCTCGTTTTTCCTGTCCCTCCTTCTGCTGCCTGCA
TGTCTGTCTCTCTGTCTCTCCCTCTTTCTCTCTGTCTCTCACCCCTCTCT
CTGCCCTCTCAACGCGACGACGTTCACCATGGGGATCCCTTACAACTCAA
CCTCGACTCAAACATGCAGGGGTATAGGCCTTGGGAATTCGTTGGGACAT
TTACCAGCCGGAGCGTTCAACGGTCTTTCGGCCCTGCGAAAGCTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15531:149..2796+

>mRNA_E-fasciculatus_F_contig15531.3854.1 ID=mRNA_E-fasciculatus_F_contig15531.3854.1|Name=mRNA_E-fasciculatus_F_contig15531.3854.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15531:149..2796+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCTAAACAACAACCGCCTGACGACCGCTATCTTCTCGTGGCTGGATGA
CAACGGCCAGCCTCTTCTAGGCGGGATGCACGACCTAGAACGCCTTCCCT
AAACAACAACCGCCTGACGACCGCTATCTTCTCGTGGCTGGATGACAACG
GCCAGCCTCTTCTAGGCGGGATGCACGACCTAGAACGCCTGGACTTGCGC
AGAAATTCGCTGGAAAACGTGCCGGCCGGAGCGTTCGACAGCCTGTCTGC
GCTCCAAACATTGGACTTGCGCAGAAATTCGCTGGAAAACGTGCCGGCCG
GAGCGTTCGACAGCCTGTCTGCGCTCCAAACATTGAACCTCTACTACTGC
GGCGTGACATCCCTGGAGGCCGACGCCTTCCTGGGCCTCGAGGCTCTCGT
TTATCTGAACCTCTACTACTGCGGCGTGACATCCCTGGAGGCCGACGCCT
TCCTGGGCCTCGAGGCTCTCGTTTATCTGGGTATAGGCCTTGGGAATTCG
TTGGGACATTTACCAGCCGGAGCGTTCAACGGTCTTTCGGCCCTGCGAAA
GCTGTGAGGGTATAGGCCTTGGGAATTCGTTGGGACATTTACCAGCCGGA
GCGTTCAACGGTCTTTCGGCCCTGCGAAAGCTGTGA
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