mRNA_E-fasciculatus_F_contig1552.3850.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1552.3850.1
Unique NamemRNA_E-fasciculatus_F_contig1552.3850.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A6H5K6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H7_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 1.380e-110
Identity = 211/266 (79.32%), Postives = 227/266 (85.34%), Query Frame = 2 
Query:  290 EPPASRNELASAITASGVEQDRVMYTRLHPALLPKGLRAVLQSTPSQRGSSSS---SSSRTEAASLARFSDFVRGVVGGTRGHRETTAAIASKLEGKMFYLESFASGQTEAQSAGARAERQAGRAAKRGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGGGGGRQQ 1078
            E PA++NE ASAITA G +QD+VMY RL PALLP GLRA L STP   GS+ S   SSS   AASL RFSD VRG+VGGTRGHR+TTAAIASKLEGK+ YL+S ASGQTE Q+AGARAERQAGRA KRGLSGKRCKQMGLNALEARNGG IPFRDLLGLHGVWKNYAA LVSK SSQK+LQQR LSA+LQGCYLTVSRAS S+LVNVAGIVLRET N FQLVTPAGK LTIPKRSCAVRLAFGD+ VT +GG LMGR GGG  +QQ
Sbjct: 1044 EAPATQNERASAITADGSQQDQVMYARLPPALLPTGLRAAL-STPQSGGSTPSRRHSSSTAAAASLDRFSDLVRGMVGGTRGHRKTTAAIASKLEGKVVYLDSLASGQTETQTAGARAERQAGRATKRGLSGKRCKQMGLNALEARNGGRIPFRDLLGLHGVWKNYAARLVSKCSSQKILQQRTLSAELQGCYLTVSRASVSSLVNVAGIVLRETVNIFQLVTPAGKMLTIPKRSCAVRLAFGDRMVTRNGGTLMGRRGGGARQQQ 1308
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: D8LNP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP5_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.660e-108
Identity = 187/219 (85.39%), Postives = 195/219 (89.04%), Query Frame = 2 
Query:  506 VVGGTRGHRETTAAIASKLEGKMFYLESFASGQTEAQSAGARAERQAGRAAKRGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGGGGGRQQRKTGKGRGPWAGGGSDDPAALPLPTAAL 1162
            +VGGTRGHRETTAA+ASKLEGK+ YL++FASGQTEAQSAGARAERQAGRA K GLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAA LVSK  SQKVLQQRILSADLQGCYLTVSRAS S+LVNVAGIVLRE ANTFQLVTPAGKTLTIPKRSCAVRLAF D+ VTLDGGALMGR GGG  RQQ+K GK          DDPAALPLPTAAL
Sbjct:    1 MVGGTRGHRETTAALASKLEGKVVYLDNFASGQTEAQSAGARAERQAGRATKLGLSGKRCKQMGLNALEARNGGSIPFRDLLGLHGVWKNYAARLVSKCPSQKVLQQRILSADLQGCYLTVSRASASSLVNVAGIVLREAANTFQLVTPAGKTLTIPKRSCAVRLAFADRVVTLDGGALMGRRGGGA-RQQQKAGKXXXXXXXXXPDDPAALPLPTAAL 218
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A0B2UWF8_TOXCA (Ribonuclease P protein subunit p29 n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2UWF8_TOXCA)

HSP 1 Score: 73.6 bits (179), Expect = 2.070e-11
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 2 
Query:  728 SIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGAL 1042
            +I +     L+ +W +Y  +L++  S  K   +RIL AD  GC L VS A   + V + GIV+RET  TFQL+T A + LTIPK+    R AF  +  TL G A 
Sbjct:   49 NIRYEQFEPLYEMWCDYFGSLLTATS--KRTDERILKADFHGCLLMVSNADNPSQVGLHGIVVRETRQTFQLITKADRLLTIPKQGTTFRFAFEGRVYTLFGDAF 151
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: L8GQK2_ACACA (Ribonuclease, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQK2_ACACA)

HSP 1 Score: 68.9 bits (167), Expect = 7.700e-10
Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = 2 
Query:  677 KRCKQMGLNALEARNGGSIP-----FRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDG 1033
            KR K M       +N   IP     +   + LH +WK Y  +LV   +    L  ++L ADL GC L V+R+   +L+ + GIVL ET  TFQ++TP  +   +PK +         Q VTL G
Sbjct:   26 KRSKVMKAKEQREKNMFKIPEEARKYEMYVPLHAMWKEYIDSLVGNATGAP-LTAKLLKADLHGCCLKVTRSKCPSLIGLEGIVLLETEQTFQIITPQNQLRVVPKANNVFTFVVSSQVVTLYG 148
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A0N5AUU0_9BILA (Ribonuclease P protein subunit p29 n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AUU0_9BILA)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-8
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 2 
Query:  731 IPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDG 1033
            + ++    L+ +W  Y  +L++  +       R+L AD  GC   V+ A   + + +AGI++RET +TFQL+T A K +TIPK     +  F +Q +TL G
Sbjct:   47 LKYKQFEPLYQLWLEYYESLMNLAAYP---DDRLLKADYHGCLFMVTDALNPSQIGLAGILIRETRHTFQLITKADKLITIPKEGTTFQFVFKNQVITLFG 144
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A7J6WT79_THATH (Ribonuclease p protein subunit p29 n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WT79_THATH)

HSP 1 Score: 67.4 bits (163), Expect = 2.240e-8
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 2 
Query:  677 KRCKQMGLNALEARNGGSIPFR------DLLG-LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGR 1051
            KRC++  ++  + R  GS+ F       D+   +H +WK+Y   L+  +   K + QR+LSADL G  L V      +   V GI++RETA TF ++T   K   +PKR+    L      +TL G  L  R
Sbjct:  178 KRCRKH-MSTKQHRKSGSLDFPAEIHKFDIFEPMHEMWKSYVLKLIGSLGDMKKIAQRLLSADLHGAILRVVECKLISYTGVTGIMVRETAETFGIITRDNKFRVVPKRASVFMLQAHCWKITLCGDQLTSR 308
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A2G5D557_AQUCA (Uncharacterized protein n=3 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5D557_AQUCA)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-8
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 2 
Query:  755 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGR 1051
            +H +WK+Y   L+  V   K + QR+LSADL G  L V      +  +V GI++RETA TF ++T   K   +PKR+    L      +TL G  L  R
Sbjct:  208 MHEMWKDYVLKLIGNVGDLKKVAQRLLSADLHGVILRVVECKVISYTDVTGIMVRETAETFGIITRDNKFRVVPKRASVFMLQAHCWKITLRGDQLTSR 306
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: UPI0018AE47E6 (uncharacterized protein LOC120281673 isoform X1 n=3 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE47E6)

HSP 1 Score: 67.0 bits (162), Expect = 3.780e-8
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 2 
Query:  755 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALMGRWGG 1060
            +H +WK Y   L+ ++  +K L Q +L ADL G  L+V    T+    V GI++RETA TF ++T   + L +PK+     L  G   +TL G  L  R GG
Sbjct:  237 MHEIWKEYILELLKEIGGKK-LAQNLLIADLHGAILSVVECKTAVFKGVNGIMIRETAQTFGIITTENRFLVVPKKGSVFILQAGPWKITLYGDKLSLRCGG 337
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A1Y1IMU1_KLENI (Ribonuclease P family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMU1_KLENI)

HSP 1 Score: 65.5 bits (158), Expect = 6.970e-8
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:  755 LHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGALM 1045
            L  +W+ Y   L      Q  L  R+L+AD  G +L+VS +   T +   G+++RET NTFQ+VT   +   +PKR    ++  G+  V+L G  ++
Sbjct:  160 LQAIWQEYILKLTQGCGGQ-ALMSRLLTADYHGAFLSVSASKDPTYIGTEGLIVRETQNTFQMVTTQNRLQVVPKRGSIFQMKLGNNLVSLFGNQIV 255
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BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Match: A0A0K0J4Y8_BRUMA (Ribonuclease P protein subunit p29 n=5 Tax=Brugia TaxID=6278 RepID=A0A0K0J4Y8_BRUMA)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-7
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 2 
Query:  728 SIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQGCYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLAFGDQAVTLDGGAL 1042
            S+ +     L+ +W +Y +TL++  + Q  L  R+L AD  GC L +  A+    V + GIV+RET  TF L+T   + LTIPK+    + A   +   L G A 
Sbjct:   50 SLKYSQFEPLYELWCDYFSTLINGSNGQ--LDARMLKADYHGCLLMIVEAANPAQVGLCGIVIRETRQTFMLITKQDRLLTIPKQDTIFQFALEGKIYLLFGNAF 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1552.3850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6H7_9PHAE1.380e-11079.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP5_ECTSI1.660e-10885.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0B2UWF8_TOXCA2.070e-1140.95Ribonuclease P protein subunit p29 n=2 Tax=Toxocar... [more]
L8GQK2_ACACA7.700e-1034.68Ribonuclease, putative n=1 Tax=Acanthamoeba castel... [more]
A0A0N5AUU0_9BILA1.090e-833.66Ribonuclease P protein subunit p29 n=1 Tax=Syphaci... [more]
A0A7J6WT79_THATH2.240e-833.33Ribonuclease p protein subunit p29 n=1 Tax=Thalict... [more]
A0A2G5D557_AQUCA2.950e-837.37Uncharacterized protein n=3 Tax=Aquilegia coerulea... [more]
UPI0018AE47E63.780e-837.25uncharacterized protein LOC120281673 isoform X1 n=... [more]
A0A1Y1IMU1_KLENI6.970e-832.99Ribonuclease P family protein n=1 Tax=Klebsormidiu... [more]
A0A0K0J4Y8_BRUMA1.130e-734.29Ribonuclease P protein subunit p29 n=5 Tax=Brugia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1552contigE-fasciculatus_F_contig1552:7208..13468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.3
Seed ortholog evalue5.5e-91
Seed eggNOG ortholog2880.D8LNP5
Preferred namePOP4
KEGG koko:K03538
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000294,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0019222,GO:0019439,GO:0019843,GO:0022613,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033204,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042134,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099116,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease P RNA binding
EggNOG OGsKOG4046@1,KOG4046@2759
EC3.1.26.5
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease P/MRP, subunit p29
Ec32 orthologEc-08_006350.1
Exons5
Model size2284
Cds size1062
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.48845-UTR-E-fasciculatus_F_contig1552:7207..73101622928027.48845-UTR-E-fasciculatus_F_contig1552:7207..7310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 7208..7310 +
1695995794.4084327-UTR-E-fasciculatus_F_contig1552:7207..73101695995794.4084327-UTR-E-fasciculatus_F_contig1552:7207..7310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 7208..7310 +
1622928027.592374-UTR-E-fasciculatus_F_contig1552:12349..134681622928027.592374-UTR-E-fasciculatus_F_contig1552:12349..13468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 12350..13468 +
1695995794.4768877-UTR-E-fasciculatus_F_contig1552:12349..134681695995794.4768877-UTR-E-fasciculatus_F_contig1552:12349..13468Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 12350..13468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.5049171-CDS-E-fasciculatus_F_contig1552:7310..74971622928027.5049171-CDS-E-fasciculatus_F_contig1552:7310..7497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 7311..7497 +
1695995794.4210992-CDS-E-fasciculatus_F_contig1552:7310..74971695995794.4210992-CDS-E-fasciculatus_F_contig1552:7310..7497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 7311..7497 +
1622928027.5156286-CDS-E-fasciculatus_F_contig1552:9872..102761622928027.5156286-CDS-E-fasciculatus_F_contig1552:9872..10276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 9873..10276 +
1695995794.4313538-CDS-E-fasciculatus_F_contig1552:9872..102761695995794.4313538-CDS-E-fasciculatus_F_contig1552:9872..10276Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 9873..10276 +
1622928027.5318031-CDS-E-fasciculatus_F_contig1552:10665..108211622928027.5318031-CDS-E-fasciculatus_F_contig1552:10665..10821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 10666..10821 +
1695995794.4434543-CDS-E-fasciculatus_F_contig1552:10665..108211695995794.4434543-CDS-E-fasciculatus_F_contig1552:10665..10821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 10666..10821 +
1622928027.5552783-CDS-E-fasciculatus_F_contig1552:11341..114311622928027.5552783-CDS-E-fasciculatus_F_contig1552:11341..11431Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 11342..11431 +
1695995794.4543755-CDS-E-fasciculatus_F_contig1552:11341..114311695995794.4543755-CDS-E-fasciculatus_F_contig1552:11341..11431Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 11342..11431 +
1622928027.57432-CDS-E-fasciculatus_F_contig1552:12124..123491622928027.57432-CDS-E-fasciculatus_F_contig1552:12124..12349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 12125..12349 +
1695995794.465885-CDS-E-fasciculatus_F_contig1552:12124..123491695995794.465885-CDS-E-fasciculatus_F_contig1552:12124..12349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 12125..12349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1552.3850.1prot_E-fasciculatus_F_contig1552.3850.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1552 7311..12349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1552.3850.1

>prot_E-fasciculatus_F_contig1552.3850.1 ID=prot_E-fasciculatus_F_contig1552.3850.1|Name=mRNA_E-fasciculatus_F_contig1552.3850.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=354bp
MSADKRALDDLDALFRAVPDEAAASSSRPAKKVRSAADAARASSSRGNSN
RASSLSGAGAKWEPPASRNELASAITASGVEQDRVMYTRLHPALLPKGLR
AVLQSTPSQRGSSSSSSSRTEAASLARFSDFVRGVVGGTRGHRETTAAIA
SKLEGKMFYLESFASGQTEAQSAGARAERQAGRAAKRGLSGKRCKQMGLN
ALEARNGGSIPFRDLLGLHGVWKNYAATLVSKVSSQKVLQQRILSADLQG
CYLTVSRASTSTLVNVAGIVLRETANTFQLVTPAGKTLTIPKRSCAVRLA
FGDQAVTLDGGALMGRWGGGGGRQQRKTGKGRGPWAGGGSDDPAALPLPT
AAL*
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mRNA from alignment at E-fasciculatus_F_contig1552:7208..13468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1552.3850.1 ID=mRNA_E-fasciculatus_F_contig1552.3850.1|Name=mRNA_E-fasciculatus_F_contig1552.3850.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6261bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1552:7208..13468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCTCGCCGCTTGATGCTTGGGTTTGGCGCAGCGATGTCGTGTCCTTTC
ACGCCTCCCTTGACACCCCACACCCACAGCAGACACCGCACTACGCAGCT
GCTATGTCTGCTGACAAACGTGCGCTCGATGACCTGGATGCCTTGTTCCG
CGCTGTGCCCGATGAGGCAGCGGCGTCGAGCTCTCGGCCTGCCAAGAAGG
TTCGATCGGCGGCAGACGCGGCACGAGCAAGCAGCAGCAGAGGCAACAGC
AACCGTGCTTCGTCTTTGAGCGGCGCCGGGGCCAAATGGGGTGAGAGACA
TTAGACAGATTACCTTTTGACACACGAAGGCGGCGGGGAACATACTTTTG
GATTCACCCCCATTGGTGCTGCCGGGGTGAGGGAGTAGTGAGTGACCAGC
TGCTGCTGCCGACAGCGATGGCCATCTGATGCTGCTACAAAATCGTCTGG
CCTCAAGAACAGGACAGCCGGTACGTACCAGCGTGAACATCAGGGCTCTC
GTGGTGCCCGTGGTGGGCGCAATCTGTAGACTGCTATACGCCGGCATATA
TGCAGCGGTCTTGAGGGTGTAGGCATATACTGATGCTGATGGAGTCTTGT
ACGTTAGTCTAGGGAAACGTTACTTGTGTACAGGGAAGCCAGCGCCGCAG
GTTGCTTAAGATACCACACCCCCTGGACCGACTTCAAAGCCCGATTTACA
GCAACGAAGACGACAACAGCAGTTCTGTTGGTGTCTATAATGGCGGCGCG
GGACCCCATCTCGTCGAGATCTTTCCGAAAACGAAGATACCATTCGGTTG
TTGACATTGCCATCCTCTTCGTCGTGGAGTAATCAAGCTTAAGCTTTGAA
TGTCGACCCAGGGGGTGTGGTATCTTACGCAACCTACAGCAGCAGTGCGC
AAGGAAACGCTCAAGATTTCAATAAAATGATGGCCGAAGACATCCGACAC
GGTTGACGGTCTGTCCCAACGTAACCGGCTAGACTTATGGGACAGAGGAA
GCATAAACAAAACTTGAGCAGAGTTCAAATTCCTTCAAAAACAAGGAGGC
CCTGAGAAGTTTGCTGCAAAAATCACAGCCCAAACTATAACCAGAAACAA
ACAGAAAATGGAACGGGAGAGAAAAAAATGGAATTTCCCCGCCCCCTTCC
TTAACCGTAACTCTGAAGGGTAGCTTTGCGGTCTTGTGTGGTGGGGGGGG
GCACCAGAGTACTCGAGATAGAATTGCCGTGAAAGCACGAGTGACAGAGT
GGGTCAGCAATCCTGCTACGCGTATTGCTATTGCTCGCCAAGGCCGCGTG
CACCAAGCGCGACCTGCTGATTCTTGGCGTAGTTTGCGTACGGCCACCAG
GACGACGATCTTCCCCAACCCCCGCTTTACGGTCACGCTGCACGAGCTCA
TTCAAGTGTTGAATGTTTCCCGAGCTTCCTTCCATCAACACGCTCTTTAA
GGTAGCAATCGGCCTGGGGATAGCTGGTACGCGGGATTCCCGAATATGTA
GTACGGAACGCCTGCTGCGAGTGTTGAAGTCACTGCTGCGTTATTCCACT
CTCCCCCAGCATCGCAACGTCGTGGACACTACCAAGCATGTGACCCACAG
CTGCCGAATGGCACCATCCGGTGTCTACAGCCTGGTATTGTAAGGCGTGC
TTCCGCTTCCAACCGCTGTACCTAAGTCTTATCTTGCTCCACGGACGAGC
AATCGCACGTATTGTACCGTCGATTAAAAGCCCCCCCAGCACCTGTCAAG
AGCAGCCAAATGGCATTAAAAGAAGACGTCAATCTTTGGGAGGGTCGCTT
GGTGTTGTAAGTCGAGCACAAGTTACGCCCACCTTTCGTGAATGGCCTCC
CATGGTCGTGAGGTTGAAGACCTCGCCAGCCTTGGACTCAACGACGTGAT
TGGGCGTGGCGCCGCCGCTGAAGTCTGACCCACTGCAGTCTGAGCCGCGA
TGCTTTCGGCAGTCTTGTGTGCTTCGTTCGTCTCCGCTGTGTTGTGCGTC
GCCGTAGCTCTAACGCAGGAATGGCGTGCGCTTTGTGCGTGATCACGGCT
ATTCCACACCGGTGTAATATACCAGGGCTTCGTGGGTATATATGTGGAGC
TCAGCGTTCGGGGTGTGGTATCTTCTGTGACCGTGTCATGTATCGATGCT
TTCGTCTTTCCAGGCCGACACAACATGTCACACGGGTTTTGTGTACATTT
TCGTTAGGGGTGTGGTATCTTCTGTGGGTCGCATTATGTCGCCTGCGGTA
TGTCCTTCAGATCACCGCGGGCAAACATATCCCGATCACCGATGTCCTTC
TAATCATCTCGGGAAAACTTACACCGAATCACCAATGTCCTACCAATCAA
CAGGGACATACCCCTCAAAGCTCAAAAGAGCTAGATCGATCTGCCAGAAT
GCGATTGCTTGCGAAAGGTAAAGGTCCGGTGAGACTTGCCAGCTCGTTCG
TGCACATTCCTTACCTTGCCCGAATGAAGTCGTCATGTGGATGCTGCACG
TTGTTGAACCTTACTTGCATGTTGTTGAAATTGTTGAACTGTATCAGCGA
TCTTCCACGTCAACATTCCCCACCCAACTGTGCGCGCACGCACAAAACTT
GCATCAGCAACGTTCCGCCTCATAGTTCCCCACCCAACCGTGCGCACGCA
CGAAACGGCCCGCAGAACCGCCCGCGTCAAGGAACGAGCTTGCCAGCGCC
ATCACAGCGAGCGGGGTTGAGCAAGATCGGGTCATGTACACCCGCCTGCA
CCCGGCTCTCCTGCCGAAAGGGCTCCGCGCAGTGTTGCAATCTACCCCAT
CCCAGAGAGGCAGCAGCAGCAGCAGCAGTAGCAGGACGGAGGCGGCATCT
TTGGCTCGATTTTCTGACTTTGTTCGGGGTGTGGTGGGAGGGACAAGAGG
GCATCGCGAGACGACAGCGGCCATAGCGTCCAAGCTCGAGGGGAAGATGT
TTTACCTGGAGAGTTTCGCGTCTGGCCAGACAGAGGCACAGAGCGCTGGC
GCGCGGGCGGAGCGGCAGGCGGGAAGAGCGGCGAAGCGTGGCTTGAGCGG
GAAGCGCTGCAAACAGATGGTGAGAGGGCGATCTTCCAGGTGGTGAACCC
TGAGCATGTAGATGACCATCCATGCCCAACGAATGTTCCATGTATTTCTC
GGGGAACAGGGTTACGTTACTGTGCACTGGTTGCTCCTGTGTTGACCTTT
TCTTCGGACATCCATCAGGTTTCGTTTTTGTCTCCTTGCCCCCGCTGCAT
CTCTTTCAACATGCTTCAGCCGTCCAACGACACCTTCTCTATCCGCACAC
GCCCTACCGCGTCGGAAACGTCGGACGTCGATATGAGCCAAGATGACCTG
TGTTTTGCTGCTGACTTGTGTAGAGAGGTGGGCCGGTTGCATGCGCTTCT
GACCTATGTACCGCCGCGCTTCCGCACGTTGTGTGCATTCATACGGAACT
ATTCTCAGGGGCTGAACGCGCTGGAGGCACGGAACGGAGGCAGTATTCCG
TTCCGCGATCTGCTGGGTCTTCACGGGGTGTGGAAAAACTACGCCGCCAC
GCTGGTCTCCAAGGTCTCGAGCCAGAAGGTTTTGCAGCAGAGGATCCTGT
CAGCTGACCTGCAGGTAGATAGGCGTGCCCGACCGAGGGCCTGGGCAAGG
CTTGACCCATACCGATGTTCTATTGCACGCCTTCTCTCCCCCCATCCTTG
TCCACCGCTCTTTCAGCACATTTCAGCAAGGCCCGACATAAACTGGGTCA
ACTATTAAGTCCTCCTTGTTGAAGGCCTGGCCCTCCGTGGAATCCCGTTA
CGGTACGGTTTCCCCGCCTGGGTCACAACAGTCTTTATTATTTTAGTTCG
CCAGACCAGGCATGGCGACTCTCGCCTCGAGCGGCCGTCTACCCTGTCCC
CTGTGCACCCCGTCCTGCATATAGGTGTTTAGCTCGATTTTGCTGTGTAC
GTCCTGAAAATATTCTGGCACTTCCTTCTCATTTTTCCAAGTACGTCCCA
GCGTAGCTACCTCATTTAGTTCCTTGCTCTTCTCCCACAACAGCCTATTT
CATTCAGATGCTGCTCATGTTTCACTGTTTTCTCTCCTGTCGGTATCACC
CCTCCCTTCGTCTTTGTGTACGTCTCTCCCTCAGGGGTGCTACCTTACGG
TGTCGAGAGCCTCGACCTCTACTTTGGTGAACGTTGCTGGCATTGTGCTG
CGAGAAACGGCCAACACATTCCAGGTGACTTACGCTGTTGCCGCTGATGT
CGCTTCAGTACTTTAGTCGGCTAACGTAGAGTACGCTGTATTTGCGGTAG
GCAGGTGTTCAGTAAATTCTTGTCAGCGGCATGAAATGTTGCCCGAGCAT
CAACTTGCTTCGTGGTCGGAGCGCAGCGTACGTACGTGTCTGGATTCTTG
ATTCCTCCGTTCGCATTCTACCGGCTGCAGCGCAGCAGCCTGTGGCTTTC
CCAGTATCAGCTTCGCGTTGCCTCGTATTGCTAGGCTGCTCTTTGATCCC
ATGTTTCACTGAAAACGGGGGGTCAGGTTTGGTGGCGCACAGTTTCTCAG
GTTGGGTCTGTCTCCTCTCCTCACTGAGTATGGTCCTGCCCAGACATGGC
TTACGACCCGGTGTGCGCTAAAAGAGCCGGATGACACGACAAATCAACCG
TTGTAGTGGTACTCGCTACACGAGGCTTTCGCACCCTGTTGAGATAAAGG
ACTTCCTAGCTGTATTTTTGCACACGGTACCGTTTTCGCAGTTCGTTACG
GAGCTCTCGGAAAACTCCTGAAATTGGCTCTCAACTTCACGTCCCAGTTG
TTGCTTGTGCTCCGTCTCCGAATTGATTGTTCGGCCAGTTCCCCCGAGCG
ACTATTATAGCAACGTAATGCCCCCCTGCTTTCCCTGCTATGCGTCTCGC
GTGCTAACGTCGCACAGCTGGTCACGCCTGCGGGCAAGACGTTGACAATC
CCCAAGCGATCGTGTGCCGTTCGCCTCGCCTTTGGCGATCAAGCGGTTAC
CCTCGATGGCGGGGCTTTGATGGGCCGGTGGGGAGGAGGAGGAGGACGGC
AACAACGAAAAACAGGGAAAGGGCGGGGTCCCTGGGCGGGAGGAGGTTCA
GACGACCCCGCCGCTCTCCCGCTCCCGACGGCCGCGTTGTAGCGTTGATC
CTGCAGGCTTTGTCTCTCGCCTGTTGATGGCGTGGGTCGGTCGATCTGAA
GGATGGGTGGGTTGTCGCCGTTGGTCTCAGGGGAAACAGCACGGCTTGCC
GGGAGGGGCATAGAGGGGGGCCGCTAGTGGAGTGAAAAGAGGTATGTACT
TCGTGTAAGGGGAGGGTGCACAGAGGCGAAACGCTTGCGACGCGCCAAGT
TGCCGCTGGCCTGTACGTCGGGCATGCAAAGCATGTCATATAAGGTGCAC
AGACAGCGAAGCATAGGAGGTTCTAAAGTGTGGCTAGACAGGAGCCTGCC
TGGACGTGGGGCATGCGAAGGTTAAGGTCGTTGCAGTAGAGAGAGAGAGA
TTGCGCTCTCCCGCACCGTACCAGCTGCGTGGCCACGTGATGTCGGACGC
TGTCACCTCGCGCTGGATGCCCGCAGCCTCGCATGTCTCGCATGTCTCGC
ATGTCTCGCATGTCTCGCATGTCTCGCATGTCTCGCATGTCACAGACGAG
ACGACCCGTCTCCGAGGTTGTCTTGGGGTGGTTGCGATGAAGTCCAGCGA
CAGGGCCGATTCTCCCCCGTTGTCCGTTCAAAAGCACCCCGGAGCCCCCG
TTCCGTTCGTGTCGGGCCAGGAAGCGCTTTATGAACCTCCCCGAAGCCGG
GGGCGCTCGGTGTATTTTGGTGCTGCCGGAATGTCCGTGGCGAATGTCGC
GCTCAACATTAGTGGAGAGCCACGCCGCGTGCTGTCGCAGGCTTTGCATG
CGCCCCCGAGGTTTTTATTGCTGTGACTAAGTTCCGAAGAGCAATCGGCT
CTTTTCGAGTTCAGTGTGTTGAGCGAATTCTTCGGCATCTCCTTTTGGCC
TTTCCTGCTGCTTTTCTCATTTTTTTTTCCTTCGCGCGGGACTATTTTAT
TGGTGCTGTATTGTTTTGTTTTTGCGTTGTTGCCGGATTGCATGTGACAA
TAGAAAAAATTCCGCGTGTTGTAAGTACAGGGGGGCAACAAAAGGTTTTC
AGCGTTAAGAAAGAGCAATTCAACATTCTACAATCGCGCAGAGTACACAA
CCCTTGGAGAAGAAGTGTCCTTAACTCCGAATAGGTCATTTACCAGCCTG
CGACATGGTGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1552:7208..13468+

>mRNA_E-fasciculatus_F_contig1552.3850.1 ID=mRNA_E-fasciculatus_F_contig1552.3850.1|Name=mRNA_E-fasciculatus_F_contig1552.3850.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2124bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1552:7208..13468+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTGCTGACAAACGTGCGCTCGATGACCTGGATGCCTTGTTCCGCGC
TGTGCCCGATGAGGCAGCGGCGTCGAGCTCTCGGCCTGCCAAGAAGGTTC
GATCGGCGGCAGACGCGGCACGAGCAAGCAGCAGCAGAGGCAACAGCAAC
CGTGCTTCGTCTTTGAGCGGCGCCGGGGCCAAATGGGATGTCTGCTGACA
AACGTGCGCTCGATGACCTGGATGCCTTGTTCCGCGCTGTGCCCGATGAG
GCAGCGGCGTCGAGCTCTCGGCCTGCCAAGAAGGTTCGATCGGCGGCAGA
CGCGGCACGAGCAAGCAGCAGCAGAGGCAACAGCAACCGTGCTTCGTCTT
TGAGCGGCGCCGGGGCCAAATGGGAACCGCCCGCGTCAAGGAACGAGCTT
GCCAGCGCCATCACAGCGAGCGGGGTTGAGCAAGATCGGGTCATGTACAC
CCGCCTGCACCCGGCTCTCCTGCCGAAAGGGCTCCGCGCAGTGTTGCAAT
CTACCCCATCCCAGAGAGGCAGCAGCAGCAGCAGCAGTAGCAGGACGGAG
GCGGCATCTTTGGCTCGATTTTCTGACTTTGTTCGGGGTGTGGTGGGAGG
GACAAGAGGGCATCGCGAGACGACAGCGGCCATAGCGTCCAAGCTCGAGG
GGAAGATGTTTTACCTGGAGAGTTTCGCGTCTGGCCAGACAGAGGCACAG
AGCGCTGGCGCGCGGGCGGAGCGGCAGGCGGGAAGAGCGGCGAAGCGTGG
CTTGAGCGGGAAGCGCTGCAAACAGATGAACCGCCCGCGTCAAGGAACGA
GCTTGCCAGCGCCATCACAGCGAGCGGGGTTGAGCAAGATCGGGTCATGT
ACACCCGCCTGCACCCGGCTCTCCTGCCGAAAGGGCTCCGCGCAGTGTTG
CAATCTACCCCATCCCAGAGAGGCAGCAGCAGCAGCAGCAGTAGCAGGAC
GGAGGCGGCATCTTTGGCTCGATTTTCTGACTTTGTTCGGGGTGTGGTGG
GAGGGACAAGAGGGCATCGCGAGACGACAGCGGCCATAGCGTCCAAGCTC
GAGGGGAAGATGTTTTACCTGGAGAGTTTCGCGTCTGGCCAGACAGAGGC
ACAGAGCGCTGGCGCGCGGGCGGAGCGGCAGGCGGGAAGAGCGGCGAAGC
GTGGCTTGAGCGGGAAGCGCTGCAAACAGATGGGGCTGAACGCGCTGGAG
GCACGGAACGGAGGCAGTATTCCGTTCCGCGATCTGCTGGGTCTTCACGG
GGTGTGGAAAAACTACGCCGCCACGCTGGTCTCCAAGGTCTCGAGCCAGA
AGGTTTTGCAGCAGAGGATCCTGTCAGCTGACCTGCAGGGGCTGAACGCG
CTGGAGGCACGGAACGGAGGCAGTATTCCGTTCCGCGATCTGCTGGGTCT
TCACGGGGTGTGGAAAAACTACGCCGCCACGCTGGTCTCCAAGGTCTCGA
GCCAGAAGGTTTTGCAGCAGAGGATCCTGTCAGCTGACCTGCAGGGGTGC
TACCTTACGGTGTCGAGAGCCTCGACCTCTACTTTGGTGAACGTTGCTGG
CATTGTGCTGCGAGAAACGGCCAACACATTCCAGGGGTGCTACCTTACGG
TGTCGAGAGCCTCGACCTCTACTTTGGTGAACGTTGCTGGCATTGTGCTG
CGAGAAACGGCCAACACATTCCAGCTGGTCACGCCTGCGGGCAAGACGTT
GACAATCCCCAAGCGATCGTGTGCCGTTCGCCTCGCCTTTGGCGATCAAG
CGGTTACCCTCGATGGCGGGGCTTTGATGGGCCGGTGGGGAGGAGGAGGA
GGACGGCAACAACGAAAAACAGGGAAAGGGCGGGGTCCCTGGGCGGGAGG
AGGTTCAGACGACCCCGCCGCTCTCCCGCTCCCGACGGCCGCGTTGTAGC
TGGTCACGCCTGCGGGCAAGACGTTGACAATCCCCAAGCGATCGTGTGCC
GTTCGCCTCGCCTTTGGCGATCAAGCGGTTACCCTCGATGGCGGGGCTTT
GATGGGCCGGTGGGGAGGAGGAGGAGGACGGCAACAACGAAAAACAGGGA
AAGGGCGGGGTCCCTGGGCGGGAGGAGGTTCAGACGACCCCGCCGCTCTC
CCGCTCCCGACGGCCGCGTTGTAG
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