mRNA_E-fasciculatus_F_contig1552.3849.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1552.3849.1
Unique NamemRNA_E-fasciculatus_F_contig1552.3849.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1552.3849.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 8.670e-76
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 3 
Query:  351 ENRRKKGEISAKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLQAALEEEDHLASALMEEQEKAMMEAVDSLREKYEEAAKVQAQVKLLGDCMRQHFQVVRSHVVDQVGSKLTETDGVVHAIHNQPDKTLSLIRSAGGLS 788
            ENRR+KGEISAKAKAVAAGVRRNASKRVDE R GQNKLATELRSTLGSL AALEEEDHLAS LMEEQE AM EAV+SL EKYEEAAKVQA+VKLLGDCMRQHFQVVRSH+VDQVGSKLT+T+ +VHAIH QPDKTLSLIR AGGLS
Sbjct:    9 ENRRQKGEISAKAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDKTLSLIRRAGGLS 154
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BLAST of mRNA_E-fasciculatus_F_contig1552.3849.1 vs. uniprot
Match: D8LNP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.620e-57
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 3 
Query:  381 AKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLQAALEEEDHLASALMEEQEKAMMEAVDSLREKYEEAAKVQAQVKLLGDCMRQHFQVVRSHVVDQVGSKLTET 713
            +KAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSL AALEEEDHLASALMEEQE+ M EAVDSL EKYEEAAKVQAQVKLLGDCMRQHFQVVRSH+VDQVGSKLTET
Sbjct:   10 SKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLHAALEEEDHLASALMEEQERTMKEAVDSLSEKYEEAAKVQAQVKLLGDCMRQHFQVVRSHIVDQVGSKLTET 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1552.3849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6H0_9PHAE8.670e-7688.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNP6_ECTSI4.620e-5793.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1552contigE-fasciculatus_F_contig1552:3546..7087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006340.1
Exons7
Model size1023
Cds size711
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.2943864-UTR-E-fasciculatus_F_contig1552:3545..37771622928027.2943864-UTR-E-fasciculatus_F_contig1552:3545..3777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 3546..3777 -
1695995794.304769-UTR-E-fasciculatus_F_contig1552:3545..37771695995794.304769-UTR-E-fasciculatus_F_contig1552:3545..3777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 3546..3777 -
1622928027.4325855-UTR-E-fasciculatus_F_contig1552:7007..70871622928027.4325855-UTR-E-fasciculatus_F_contig1552:7007..7087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 7008..7087 -
1695995794.3980913-UTR-E-fasciculatus_F_contig1552:7007..70871695995794.3980913-UTR-E-fasciculatus_F_contig1552:7007..7087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1552 7008..7087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.3358943-CDS-E-fasciculatus_F_contig1552:3777..38541622928027.3358943-CDS-E-fasciculatus_F_contig1552:3777..3854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 3778..3854 -
1695995794.3200178-CDS-E-fasciculatus_F_contig1552:3777..38541695995794.3200178-CDS-E-fasciculatus_F_contig1552:3777..3854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 3778..3854 -
1622928027.3485863-CDS-E-fasciculatus_F_contig1552:4295..44191622928027.3485863-CDS-E-fasciculatus_F_contig1552:4295..4419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 4296..4419 -
1695995794.338013-CDS-E-fasciculatus_F_contig1552:4295..44191695995794.338013-CDS-E-fasciculatus_F_contig1552:4295..4419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 4296..4419 -
1622928027.359561-CDS-E-fasciculatus_F_contig1552:4750..48621622928027.359561-CDS-E-fasciculatus_F_contig1552:4750..4862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 4751..4862 -
1695995794.3475296-CDS-E-fasciculatus_F_contig1552:4750..48621695995794.3475296-CDS-E-fasciculatus_F_contig1552:4750..4862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 4751..4862 -
1622928027.3755786-CDS-E-fasciculatus_F_contig1552:5553..56501622928027.3755786-CDS-E-fasciculatus_F_contig1552:5553..5650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 5554..5650 -
1695995794.3613956-CDS-E-fasciculatus_F_contig1552:5553..56501695995794.3613956-CDS-E-fasciculatus_F_contig1552:5553..5650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 5554..5650 -
1622928027.3896427-CDS-E-fasciculatus_F_contig1552:5917..59931622928027.3896427-CDS-E-fasciculatus_F_contig1552:5917..5993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 5918..5993 -
1695995794.3702917-CDS-E-fasciculatus_F_contig1552:5917..59931695995794.3702917-CDS-E-fasciculatus_F_contig1552:5917..5993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 5918..5993 -
1622928027.4035432-CDS-E-fasciculatus_F_contig1552:6463..66741622928027.4035432-CDS-E-fasciculatus_F_contig1552:6463..6674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 6464..6674 -
1695995794.3789678-CDS-E-fasciculatus_F_contig1552:6463..66741695995794.3789678-CDS-E-fasciculatus_F_contig1552:6463..6674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 6464..6674 -
1622928027.41777-CDS-E-fasciculatus_F_contig1552:6993..70071622928027.41777-CDS-E-fasciculatus_F_contig1552:6993..7007Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 6994..7007 -
1695995794.3892944-CDS-E-fasciculatus_F_contig1552:6993..70071695995794.3892944-CDS-E-fasciculatus_F_contig1552:6993..7007Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1552 6994..7007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1552.3849.1prot_E-fasciculatus_F_contig1552.3849.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1552 3778..7007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1552.3849.1

>prot_E-fasciculatus_F_contig1552.3849.1 ID=prot_E-fasciculatus_F_contig1552.3849.1|Name=mRNA_E-fasciculatus_F_contig1552.3849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp
MEMPRMPLLSMRDNQSPADGATSDRTAVAKTPTPFKLSQLDLGSIGSGKK
TSAKKRAADTATASDDDEDPREEAQMIQLLQQMQRVKQSKENRRKKGEIS
AKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLQAALEEEDHLA
SALMEEQEKAMMEAVDSLREKYEEAAKVQAQVKLLGDCMRQHFQVVRSHV
VDQVGSKLTETDGVVHAIHNQPDKTLSLIRSAGGLS*
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mRNA from alignment at E-fasciculatus_F_contig1552:3546..7087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1552.3849.1 ID=mRNA_E-fasciculatus_F_contig1552.3849.1|Name=mRNA_E-fasciculatus_F_contig1552.3849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1552:3546..7087- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCAACGCAGCTCAAGCAGATCAAGAGCACACCTCTCCACTCTCCCTCGC
CGAACCGGCAGCAGCAGCCGAGGAGACGTGATGGAGATGCCGCGGTCAGT
TTTGCCCAACTCTTATGGGGCTCAGGTCCTACGGTCAGCTTACAGTAGGA
GGCTTCGTACATCTGTGTGCTGAAAAGTGTATCCACCCTGGTTTCAACTT
TCGGCCGGCGTGCAACAGGAGTTCAAAGGACACTCAAACGGAACGACTTC
GTTGATACTCTTGAATCTCCATTTGTCTACACTAGGCTCTCTGAGCGACG
GAGTGCGTCTAGGCTGCAGAAAGTGGAGATGTCTTTGGCAGTCTGTCAGG
GTGTACTGTGGGTCATCTCTGACGACCTTGACCGACAATTATTTGCTGCC
GATCGGTGCGCAGAATGCCTCTGCTATCGATGCGGGACAACCAGTCGCCG
GCCGACGGCGCCACCAGCGACCGCACTGCTGTCGCCAAAACGCCAACCCC
GTTCAAGCTCTCGCAGCTGGATCTCGGCAGTATAGGAAGCGGCAAGAAGA
CCAGCGCGAAGAAGAGAGCAGCAGATACCGCTACTGCCTCTGACGATGAC
GAGGATCCGCGCGAGGAAGCTCAGGTCGTGTATGTGTTATGTACATACTG
TAGGTCTAGTCCCGTAGTCGAGGCATGCCTATTGCAATGGTCTCGGTTCT
CCGCATCATAACAGGCTTACGCTTTTCTCGAAAACGTCCGCCATGATTCG
TTTAAGTTGTTGGAGAAACTCTACACAAACTACAGACATGCTGTTACATA
CCGAGTCTTGTCATGCCGTCCCGTTCAGCGGCAAGTAGACTACTTGTATG
GTGATGTCATTTCGATGACGAGCACCAGCAGGGGGCATCTATCTCTGGCT
AATGGTTTGGCCCAACAAAGCCACTCCAGTGATGTGTCATGGTGCATCCA
TGCGCGCGCCCTTCATCCACCAGTCAGTCACTGGCATGAACCCGATATAT
ATTGTAACGTGAAAGAGGTATCACACACTGGATGAACCATCGCACTTCTT
GCCTTTCCCACGCATTTCCTGCGCGTCTGTTCCCTGTTCGGCAGATGATA
CAGCTTCTGCAGCAGATGCAGAGGGTGAAGCAGAGCAAAGAAAACAGGCG
CAAGAAGGGCGAGATTTCAGGTGGGAGTACACTGGAGCCAATGCAGCAGC
GGTCAATCGCAAGCCGCGTGACGTGATGCACCCAAACCAAAAACCCGGTT
TTAGCCCCACAACGCAGATAGACTAGCCCTGTTGAGGAAGATTGGCATAT
CCTGCTCCGGACGCCGCATGCATGACTAAGATCAACTTCAATGCAATAGT
TTGGGCAGCTGGGCTGAGCGGGAGTTTCACAAACACTTGATGGTGCTTTT
GCTAATCCATGTTCATTCTTTTCTCCGCTTTGCTCAGCGAAAGCCAAGGC
CGTGGCCGCTGGGGTCCGAAGGAATGCGTCCAAGAGAGTGGATGAAGTCA
GGACCGGCCAGAACAAGCTTGCCACCGAGCTCAGGTGATAATACAGTGCC
AGTAGTCTAATGAGTAATCTTCGCAATAGAAGTAAGAAGTAGCAGACGTG
ACGGGGGGTTGTACTCATATCCGTTCATGCCGTAGTCGTTAGACCAGTGA
CCTCGCATCCCTACAAAGCCGGGGCGGAGCTTGCTGAGGGTTCTCACCGG
ACCCGGCCCTAACATCACCAAGCACGAAGCGCCGTGAGGTATTCGGCGAG
TCGCAGGTAGGGTATCCTGCGTCCTTCTGACGGCATTCGGCATCTTGTGC
TTGCTGCATTGCTACGGATGACAGTTGTGAATGATTATATATATATTTTT
TTCTGGTACCCCCACTTCCAGAAACAGTTAAAAGCGTTGTGTATCTGCCT
CGAGGGTGCTTGACCGATTTAACACAACGTGGTGCGATCAGAGTTAGCAC
AACGTGGTGCGATCATCCCCTTTGCACGGGGTAAGGGCCTTGATCACGAA
CAAGATAATCACGTCTCGATCACACCATTCTGGTTAACTTAACAAACAAC
AAAGGAAAAGACAAAGCGGTAACCAGTAAACGCGCAGAGAGCCGTCGAAA
TCGGACTGGTAATGCTTTCGGCGTGTGAAAGCATCAGGGGCAAGTGGTCC
TTGCAAACTCTTTCACAACAAGCGTAGAATCTCACCCATCCGTGATGCTC
CGCCAAACACGAAAACGCCCACAAGGTCGACGTTGGGGTCTCTGCAGGCG
GCTCTCGAGGAGGAAGACCACCTCGCCTCGGCTCTCATGGAGGAGCAGGA
AAAGGCCATGATGGAGGCCGTCGACTCCCTCCGCGAGGTACCGTGCGTTG
GGCTGATGTTTGTGGAATGTTATCACGTTGTTGCTGATAACGCTTGCTGA
TAACGCCCCCACCTCACGAACCTCTACATTAAAACTTACATGGCGGCCCT
GAGTCCCCACCAGCGAAACAAGAAACCCAGCCTCGGCAAAAAAACGGTTC
TTGACTGCCAGCTTGGTAGCTAGGTAAAAGATATTTCGAGGACTTTTCTT
CGCTTGCAACCCACCAACACTAAAGTCACAGAAGGACCCTTTCGGAAAGG
TTAACTGAGGTTGACGAAATGAAAACTATTTGGTACATCTGTCGCGCGCT
TTGTATCCCCGGGCGCAGAAGTACGAGGAGGCTGCAAAAGTACAAGCACA
GGTGAAGCTCCTGGGGGATTGCATGAGGCAGCATTTCCAGGTGGTGCGCA
GTCATGTCGTCGACCAAGTCGGCAGCAAGCTCACAGAGACGGGTGAGTCC
CGGTTAGGTTGTTCCCACTTCCTCTGTTCCAAAGCTCTGCGGTGGTTTGG
GGTAAAGCTTTTGCCTTCCTGCATCTGTAAGCAGCTCTAGGAACGGAACA
AACCATCTCCAAGTTAACTCTTTAAGGGGGATAGCTCGTCAAGGTACCCG
GTATTCTATTGTATCGACGTGTTGCGAAAGCTCGAACGATGTCGGTTAGG
GCTGCATCTTCCACATGGACGGATCGGCGTGTAAAATCTCAAGGAGCCAG
CAAGAAGGCTACCCGGTATTCGACCTTGATCCGTTGCCTCGAAGAATATC
TCGTACACGTATTGCCGCGCTACCGTTGACCCATTCGAGAACCATGGAAG
CGCGCAGTGTATCGTCCAGTTTGACTTCCCCAGCCCCCAACGTCTGCACT
CCTGTTGCCTCCCCTGTGTTTGCACTATCACAGATGGAGTGGTGCACGCG
ATACACAATCAGCCCGACAAAACGCTCAGCTTGATCAGGAGCGCAGGAGG
CTTGTCTTGAGCAGACAGCACCAACAAATATGATCGATCCTACCATATGT
AGAACCAGCGACCAGTCAACCCCTACCCTACTACCCCGCTGTGTGTGTGT
GTGTGTGTGTGTGAACCAAGACGACAAGAGGGCTCGCGTGATTGCTGCCG
TTTTCGGCACGGTGTGGACCCAGCCAGGCTGTGTCTCACCTGGATGGAGA
GAGAGGAACAAAAACAGGCCCACCTGGCGATGAAGCCGTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1552:3546..7087-

>mRNA_E-fasciculatus_F_contig1552.3849.1 ID=mRNA_E-fasciculatus_F_contig1552.3849.1|Name=mRNA_E-fasciculatus_F_contig1552.3849.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1552:3546..7087- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGATGCCGCGATGGAGATGCCGCGAATGCCTCTGCTATCGATGCGG
GACAACCAGTCGCCGGCCGACGGCGCCACCAGCGACCGCACTGCTGTCGC
CAAAACGCCAACCCCGTTCAAGCTCTCGCAGCTGGATCTCGGCAGTATAG
GAAGCGGCAAGAAGACCAGCGCGAAGAAGAGAGCAGCAGATACCGCTACT
GCCTCTGACGATGACGAGGATCCGCGCGAGGAAGCTCAGAATGCCTCTGC
TATCGATGCGGGACAACCAGTCGCCGGCCGACGGCGCCACCAGCGACCGC
ACTGCTGTCGCCAAAACGCCAACCCCGTTCAAGCTCTCGCAGCTGGATCT
CGGCAGTATAGGAAGCGGCAAGAAGACCAGCGCGAAGAAGAGAGCAGCAG
ATACCGCTACTGCCTCTGACGATGACGAGGATCCGCGCGAGGAAGCTCAG
ATGATACAGCTTCTGCAGCAGATGCAGAGGGTGAAGCAGAGCAAAGAAAA
CAGGCGCAAGAAGGGCGAGATTTCAGATGATACAGCTTCTGCAGCAGATG
CAGAGGGTGAAGCAGAGCAAAGAAAACAGGCGCAAGAAGGGCGAGATTTC
AGCGAAAGCCAAGGCCGTGGCCGCTGGGGTCCGAAGGAATGCGTCCAAGA
GAGTGGATGAAGTCAGGACCGGCCAGAACAAGCTTGCCACCGAGCTCAGC
GAAAGCCAAGGCCGTGGCCGCTGGGGTCCGAAGGAATGCGTCCAAGAGAG
TGGATGAAGTCAGGACCGGCCAGAACAAGCTTGCCACCGAGCTCAGGTCG
ACGTTGGGGTCTCTGCAGGCGGCTCTCGAGGAGGAAGACCACCTCGCCTC
GGCTCTCATGGAGGAGCAGGAAAAGGCCATGATGGAGGCCGTCGACTCCC
TCCGCGAGGTCGACGTTGGGGTCTCTGCAGGCGGCTCTCGAGGAGGAAGA
CCACCTCGCCTCGGCTCTCATGGAGGAGCAGGAAAAGGCCATGATGGAGG
CCGTCGACTCCCTCCGCGAGAAGTACGAGGAGGCTGCAAAAGTACAAGCA
CAGGTGAAGCTCCTGGGGGATTGCATGAGGCAGCATTTCCAGGTGGTGCG
CAGTCATGTCGTCGACCAAGTCGGCAGCAAGCTCACAGAGACGGAAGTAC
GAGGAGGCTGCAAAAGTACAAGCACAGGTGAAGCTCCTGGGGGATTGCAT
GAGGCAGCATTTCCAGGTGGTGCGCAGTCATGTCGTCGACCAAGTCGGCA
GCAAGCTCACAGAGACGGATGGAGTGGTGCACGCGATACACAATCAGCCC
GACAAAACGCTCAGCTTGATCAGGAGCGCAGGAGGCTTGTCTTGAATGGA
GTGGTGCACGCGATACACAATCAGCCCGACAAAACGCTCAGCTTGATCAG
GAGCGCAGGAGGCTTGTCTTGA
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