mRNA_E-fasciculatus_F_contig15518.3848.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15518.3848.1
Unique NamemRNA_E-fasciculatus_F_contig15518.3848.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15518.3848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15518contigE-fasciculatus_F_contig15518:1455..1968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.2051997-UTR-E-fasciculatus_F_contig15518:1454..16111622928027.2051997-UTR-E-fasciculatus_F_contig15518:1454..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15518 1455..1611 +
1695995794.2606142-UTR-E-fasciculatus_F_contig15518:1454..16111695995794.2606142-UTR-E-fasciculatus_F_contig15518:1454..1611Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15518 1455..1611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.2208552-CDS-E-fasciculatus_F_contig15518:1611..19681622928027.2208552-CDS-E-fasciculatus_F_contig15518:1611..1968Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15518 1612..1968 +
1695995794.2702549-CDS-E-fasciculatus_F_contig15518:1611..19681695995794.2702549-CDS-E-fasciculatus_F_contig15518:1611..1968Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15518 1612..1968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15518.3848.1prot_E-fasciculatus_F_contig15518.3848.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15518 1612..1968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15518.3848.1

>prot_E-fasciculatus_F_contig15518.3848.1 ID=prot_E-fasciculatus_F_contig15518.3848.1|Name=mRNA_E-fasciculatus_F_contig15518.3848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
MFHRPCQHEFVRVSNQTQRITASSTDLQHGCHSQNAQLRTCETSRREQNN
TPHRLHMMTRVPGKFCRLYEKPPPPNAMTLRCNEQRCDRDDNGPGMRLHE
YTPCPCFFARRWLMISPFA
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mRNA from alignment at E-fasciculatus_F_contig15518:1455..1968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15518.3848.1 ID=mRNA_E-fasciculatus_F_contig15518.3848.1|Name=mRNA_E-fasciculatus_F_contig15518.3848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=514bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15518:1455..1968+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGCTTGACGCCTAGAGTGAAAACAAAAACTGGCTCTATGTCCCGGGG
ACGTGTTCCGCGGGAAGAAAGCCTTCGCAAGAAATACAAAACAACGTTTC
GCGTAAAAAAGAAAAAATCGTGCCTGCGTGCCTGCGCAACGCACAACGCA
CACATACATGTTCCACAGACCATGTCAACATGAATTCGTCAGAGTGAGTA
ATCAAACGCAGCGGATTACAGCAAGCAGTACAGACCTGCAGCACGGTTGC
CATAGCCAGAACGCACAACTACGCACATGCGAAACATCACGACGAGAACA
AAACAATACCCCTCACAGGTTGCACATGATGACGCGAGTTCCAGGCAAAT
TCTGCAGGTTGTACGAGAAACCGCCACCACCGAACGCCATGACGTTGAGA
TGTAACGAGCAACGATGCGACCGCGATGACAATGGCCCTGGCATGCGTTT
GCATGAGTACACCCCCTGTCCCTGCTTTTTCGCCCGCAGGTGGTTGATGA
TATCACCGTTTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15518:1455..1968+

>mRNA_E-fasciculatus_F_contig15518.3848.1 ID=mRNA_E-fasciculatus_F_contig15518.3848.1|Name=mRNA_E-fasciculatus_F_contig15518.3848.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15518:1455..1968+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCCACAGACCATGTCAACATGAATTCGTCAGAGTGAGTAATCAAAC
GCAGCGGATTACAGCAAGCAGTACAGACCTGCAGCACGGTTGCCATAGCC
AGAACGCACAACTACGCACATGCGAAACATCACGACGAGAACAAAACAAT
ACCCCTCACAGGTTGCACATGATGACGCGAGTTCCAGGCAAATTCTGCAG
GTTGTACGAGAAACCGCCACCACCGAACGCCATGACGTTGAGATGTAACG
AGCAACGATGCGACCGCGATGACAATGGCCCTGGCATGCGTTTGCATGAG
TACACCCCCTGTCCCTGCTTTTTCGCCCGCAGGTGGTTGATGATATCACC
GTTTGCGATGTTCCACAGACCATGTCAACATGAATTCGTCAGAGTGAGTA
ATCAAACGCAGCGGATTACAGCAAGCAGTACAGACCTGCAGCACGGTTGC
CATAGCCAGAACGCACAACTACGCACATGCGAAACATCACGACGAGAACA
AAACAATACCCCTCACAGGTTGCACATGATGACGCGAGTTCCAGGCAAAT
TCTGCAGGTTGTACGAGAAACCGCCACCACCGAACGCCATGACGTTGAGA
TGTAACGAGCAACGATGCGACCGCGATGACAATGGCCCTGGCATGCGTTT
GCATGAGTACACCCCCTGTCCCTGCTTTTTCGCCCGCAGGTGGTTGATGA
TATCACCGTTTGCG
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