mRNA_E-fasciculatus_F_contig15517.3847.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15517.3847.1
Unique NamemRNA_E-fasciculatus_F_contig15517.3847.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15517.3847.1 vs. uniprot
Match: D8LBU0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU0_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.730e-62
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 VYLTALLTEWFQSAFLFVYLREMHPEQFVVRMYLAGVASQLSLSVLLEVMGGFVPHKLRCAACLALQAGSAVLMLHPAFGGLVTSRVLGGFAAALLHSSFEAWMVEQ 321
            VYLTALLTEWFQSAFLFVYLREMHPEQFVVRMYLAG ASQLSLSVLLEVMGGFVPHKLRCAACLALQAGSAVLMLHPAFGGLVTSRVLGGFAAALLHSSFEAWMVEQ
Sbjct:   59 VYLTALLTEWFQSAFLFVYLREMHPEQFVVRMYLAGAASQLSLSVLLEVMGGFVPHKLRCAACLALQAGSAVLMLHPAFGGLVTSRVLGGFAAALLHSSFEAWMVEQ 165
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15517.3847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBU0_ECTSI1.730e-6299.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15517contigE-fasciculatus_F_contig15517:2564..2905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.8e-51
Seed eggNOG ortholog2880.D8LBU0
EggNOG free text desc.molybdate ion transmembrane transporter activity
EggNOG OGsKOG4332@1,KOG4332@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928027.1624188-CDS-E-fasciculatus_F_contig15517:2563..29051622928027.1624188-CDS-E-fasciculatus_F_contig15517:2563..2905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15517 2564..2905 +
1695995794.2491937-CDS-E-fasciculatus_F_contig15517:2563..29051695995794.2491937-CDS-E-fasciculatus_F_contig15517:2563..2905Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15517 2564..2905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15517.3847.1prot_E-fasciculatus_F_contig15517.3847.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15517 2564..2905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15517.3847.1

>prot_E-fasciculatus_F_contig15517.3847.1 ID=prot_E-fasciculatus_F_contig15517.3847.1|Name=mRNA_E-fasciculatus_F_contig15517.3847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
VYLTALLTEWFQSAFLFVYLREMHPEQFVVRMYLAGVASQLSLSVLLEVM
GGFVPHKLRCAACLALQAGSAVLMLHPAFGGLVTSRVLGGFAAALLHSSF
EAWMVEQVRQRQRP
back to top

mRNA from alignment at E-fasciculatus_F_contig15517:2564..2905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15517.3847.1 ID=mRNA_E-fasciculatus_F_contig15517.3847.1|Name=mRNA_E-fasciculatus_F_contig15517.3847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15517:2564..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTACCTCACCGCTCTCCTGACGGAGTGGTTCCAATCCGCGTTCCTGTT
CGTCTACCTCCGTGAGATGCACCCGGAGCAATTCGTCGTCAGGATGTACC
TCGCCGGCGTGGCCTCTCAGCTGTCGCTCTCGGTCCTGCTCGAGGTCATG
GGCGGCTTCGTGCCGCACAAGCTGCGGTGCGCGGCCTGCCTGGCTCTGCA
GGCCGGCTCCGCCGTGCTGATGCTGCACCCGGCGTTCGGCGGGCTGGTGA
CGAGCCGGGTGCTGGGCGGGTTCGCCGCGGCCCTCCTTCACTCTTCCTTC
GAGGCGTGGATGGTGGAGCAGGTGCGACAGAGGCAGCGTCCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15517:2564..2905+

>mRNA_E-fasciculatus_F_contig15517.3847.1 ID=mRNA_E-fasciculatus_F_contig15517.3847.1|Name=mRNA_E-fasciculatus_F_contig15517.3847.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15517:2564..2905+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTACCTCACCGCTCTCCTGACGGAGTGGTTCCAATCCGCGTTCCTGTT
CGTCTACCTCCGTGAGATGCACCCGGAGCAATTCGTCGTCAGGATGTACC
TCGCCGGCGTGGCCTCTCAGCTGTCGCTCTCGGTCCTGCTCGAGGTCATG
GGCGGCTTCGTGCCGCACAAGCTGCGGTGCGCGGCCTGCCTGGCTCTGCA
GGCCGGCTCCGCCGTGCTGATGCTGCACCCGGCGTTCGGCGGGCTGGTGA
CGAGCCGGGTGCTGGGCGGGTTCGCCGCGGCCCTCCTTCACTCTTCCTTC
GAGGCGTGGATGGTGGAGCAGGTGCGACAGAGGCAGCGTCCGGTGTACCT
CACCGCTCTCCTGACGGAGTGGTTCCAATCCGCGTTCCTGTTCGTCTACC
TCCGTGAGATGCACCCGGAGCAATTCGTCGTCAGGATGTACCTCGCCGGC
GTGGCCTCTCAGCTGTCGCTCTCGGTCCTGCTCGAGGTCATGGGCGGCTT
CGTGCCGCACAAGCTGCGGTGCGCGGCCTGCCTGGCTCTGCAGGCCGGCT
CCGCCGTGCTGATGCTGCACCCGGCGTTCGGCGGGCTGGTGACGAGCCGG
GTGCTGGGCGGGTTCGCCGCGGCCCTCCTTCACTCTTCCTTCGAGGCGTG
GATGGTGGAGCAGGTGCGACAGAGGCAGCGTCCG
back to top