mRNA_E-fasciculatus_F_contig155.3840.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig155.3840.1
Unique NamemRNA_E-fasciculatus_F_contig155.3840.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Match: D7G8E0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E0_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 4.140e-95
Identity = 143/169 (84.62%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 MNTTSGHGPHDLKELLDSLVEHTEDDGRPVLYLKDDGEGLQLQDEWDQREMLQTQQARRRDADARTRAELEAWGCETDATGAVIPSGGRSDDSALGVGGTMARETRMVPFTPVPDEGWQVVSDLQAGQRIVRQLACVNGIEADELTLAEVGVQELAWQRSGHSPVGAWL 507
            MNTTSG  PHDLKELLDSLVEHTEDDGRPVLYLKDDGE LQ+QDEWDQRE LQTQQAR RDADARTRAELEAWGCETD TGAVI SGGRS DSA+GVGG +A ETR+ PF  V DE WQVVSDLQA QR+VRQL CVNGIEADELTLAEVGV+ LAW+RSGHS VGAWL
Sbjct:    1 MNTTSGRVPHDLKELLDSLVEHTEDDGRPVLYLKDDGEELQVQDEWDQREELQTQQARHRDADARTRAELEAWGCETDVTGAVIRSGGRSQDSAMGVGGIIACETRVAPFDLVSDEDWQVVSDLQADQRVVRQLVCVNGIEADELTLAEVGVEGLAWRRSGHSSVGAWL 169
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BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Match: A0A6H5KUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK3_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 6.270e-44
Identity = 87/162 (53.70%), Postives = 95/162 (58.64%), Query Frame = 1 
Query:  169 ARRRDADARTRAELEAWGCETDATGAVIPSGGRSDDSALGVGGTMARETRMVPFTPVPDEGWQV-------------------------------------------------VSDLQAGQRIVRQLACVNGIEADELTLAEVGVQELAWQRSGHSPVGAWL 507
            AR +DADARTRAE+EAWGCE +ATGAV  SGGRS DSA+GVGG +ARETR  PF  V  E WQV                                                 VSDLQA QR+VRQL C NGIEADELTLAEVGV+ LAW+RSGHS VGAWL
Sbjct:    3 ARHQDADARTRAEVEAWGCEPNATGAVFRSGGRSQDSAMGVGGILARETRAAPFDRVSHEDWQVRFDITRSGRHIYTFTHVVEGARSTVKARELYFHEKVILLSCARNRNTGVVSDLQADQRVVRQLVCANGIEADELTLAEVGVEGLAWRRSGHSSVGAWL 164
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BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.110e-30
Identity = 79/177 (44.63%), Postives = 97/177 (54.80%), Query Frame = 1 
Query:   25 PHDLKELLDSLVEHTEDDGRPVLYLKDD--------------GEGLQLQDEWDQREMLQTQQARRRDADARTRAELEAWGCETDA----TGAVIPSGGRSDDSALGVGGTM---------------ARETRMVPFTPVPDEGWQVVSDLQAGQRIVRQLACVNGIEADELTLAEVGV 456
            P  L ELLDSLVE+ +DDGRP+LY  D+              G  ++LQDEWD+REM   +QA  R A+A+  AE+  WGCETDA    TGA   S G    +A   GG                 A   R VPF P  DE WQ+   + AG+++VRQL  VNG+EADELTLAE  V
Sbjct:  882 PRCLDELLDSLVEYRDDDGRPILYFNDNIASFKAAVGGREAGGGDIRLQDEWDEREMANLRQAGSRQAEAQAAAEIRLWGCETDAAGAPTGASPSSAGHVGRAATATGGGAXXXXXXXXXXXXGVDADNARFVPFEPACDEKWQLAMPMPAGRKMVRQLMFVNGVEADELTLAEASV 1058
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BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Match: D7FZC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC5_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.750e-30
Identity = 77/181 (42.54%), Postives = 98/181 (54.14%), Query Frame = 1 
Query:   25 PHDLKELLDSLVEHTEDDGRPVLYLKDD--------------GEGLQLQDEWDQREMLQTQQARRRDADARTRAELEAWGCETDA----TGAVIPSGGRSDDSALGVG---------------GTMARETRMVPFTPVPDEGWQVVSDLQAGQRIVRQLACVNGIEADELTLAEVGVQELA 468
            P  L ELLDSLVE+ +DDGRP+LY  D+               + ++LQDEWD+REM   +QA  R A+ +  AE+  WGCETDA    TGA   S G    +A   G               G  A   R VPF P  DE WQ+   + AG+++VRQL  VNG+EADELTLAE+    L+
Sbjct:  850 PRCLDELLDSLVEYRDDDGRPILYFNDNIDSFKAAVGGREAVSDDIRLQDEWDEREMANLRQAGSRQAETQAAAEIRLWGCETDAAGAPTGAAPSSAGHLGRAATATGSXXXXXXXXXXERVAGVDADNARFVPFEPACDENWQLAMPMPAGRKMVRQLMFVNGVEADELTLAELHASVLS 1030
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BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Match: A0A6H5KTU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.470e-27
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   82 RPVLYLKDDGEGLQLQDEWDQREMLQTQQARRRDADARTRAELEAWGCETDATGAVIPSGGRSDDSAL 285
            RPVLYLKD  E LQLQDEWDQREMLQTQQARRRDAD  TRAE+E WGCETDATGAV  SG RS DSA+
Sbjct:   22 RPVLYLKDGVEELQLQDEWDQREMLQTQQARRRDADPGTRAEVETWGCETDATGAVFRSGRRSQDSAI 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig155.3840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8E0_ECTSI4.140e-9584.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUK3_9PHAE6.270e-4453.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA82_9PHAE1.110e-3044.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZC5_ECTSI3.750e-3042.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTU0_9PHAE5.470e-2782.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig155contigE-fasciculatus_F_contig155:6038..6971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010810.1
Exons3
Model size513
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig155.3840.1prot_E-fasciculatus_F_contig155.3840.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig155 6038..6971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928025.8989143-CDS-E-fasciculatus_F_contig155:6037..61201622928025.8989143-CDS-E-fasciculatus_F_contig155:6037..6120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6038..6120 +
1695995793.509508-CDS-E-fasciculatus_F_contig155:6037..61201695995793.509508-CDS-E-fasciculatus_F_contig155:6037..6120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6038..6120 +
1622928025.910018-CDS-E-fasciculatus_F_contig155:6270..65441622928025.910018-CDS-E-fasciculatus_F_contig155:6270..6544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6271..6544 +
1695995793.522282-CDS-E-fasciculatus_F_contig155:6270..65441695995793.522282-CDS-E-fasciculatus_F_contig155:6270..6544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6271..6544 +
1622928025.9207363-CDS-E-fasciculatus_F_contig155:6815..69711622928025.9207363-CDS-E-fasciculatus_F_contig155:6815..6971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6816..6971 +
1695995793.534366-CDS-E-fasciculatus_F_contig155:6815..69711695995793.534366-CDS-E-fasciculatus_F_contig155:6815..6971Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig155 6816..6971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig155.3840.1

>prot_E-fasciculatus_F_contig155.3840.1 ID=prot_E-fasciculatus_F_contig155.3840.1|Name=mRNA_E-fasciculatus_F_contig155.3840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
MNTTSGHGPHDLKELLDSLVEHTEDDGRPVLYLKDDGEGLQLQDEWDQRE
MLQTQQARRRDADARTRAELEAWGCETDATGAVIPSGGRSDDSALGVGGT
MARETRMVPFTPVPDEGWQVVSDLQAGQRIVRQLACVNGIEADELTLAEV
GVQELAWQRSGHSPVGAWLL*
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mRNA from alignment at E-fasciculatus_F_contig155:6038..6971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig155.3840.1 ID=mRNA_E-fasciculatus_F_contig155.3840.1|Name=mRNA_E-fasciculatus_F_contig155.3840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig155:6038..6971+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATACCACGTCGGGTCATGGCCCTCATGACTTGAAAGAGTTGCTCGA
CTCCTTGGTGGAGCACACAGAAGATGATGGTCGGTGAGTAAGTCGCTGGA
TATCCGAGGACTGCTCTTTGGCGAGGGGTCAACCAACCACCGCGGGAACT
CTCGGTTTCCCCACCGATGCGTGCTTCGTTAAATTTATCTTCCGCCTTCT
CTTGCCTGACCCACGCCGCTGTCACGTCGAAAGGCCTGTCCTGTACCTGA
AGGACGATGGAGAGGGGCTCCAGCTTCAGGACGAGTGGGACCAGCGAGAG
ATGCTCCAAACCCAGCAGGCACGGCGCCGGGACGCCGATGCAAGGACTCG
CGCGGAGCTTGAAGCGTGGGGATGCGAAACGGATGCCACGGGGGCAGTTA
TTCCATCTGGTGGGAGATCAGACGACTCGGCTCTGGGCGTTGGGGGCACA
ATGGCTCGTGAAACGCGGATGGTGCCATTTACTCCAGTGCCCGATGAAGG
CTGGCAGGTGCGATTCGGCATTCCTCGCTTTGGTCATTACCCCGTGTTCT
GTAAAAACCAGAGAGATTGTATGTCCATCAGAAGGTCAACCTCTTGTCAT
GCGCACGCACTCTGAACACAGGCGAAAAAACATGCATGCGTTGAAACATT
CAACCGTCTTCTGTGCGCTTGATCCCATGCGAGAAGCGTGGATTTGTGTC
TTCTTTCCCTACACTGTGGGCTGGGTCGTGTACTTGCTTCCTTTGACTTG
TTGGTTCCGCCTCCAATGGGTGCTTAAGGTTGTTTCGGACTTGCAAGCCG
GGCAGAGGATTGTGCGTCAGCTGGCGTGCGTCAATGGCATCGAGGCCGAC
GAGCTGACGCTGGCAGAGGTGGGTGTCCAGGAGTTGGCGTGGCAGCGTTC
TGGGCATTCGCCCGTCGGTGCTTGGTTGTTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig155:6038..6971+

>mRNA_E-fasciculatus_F_contig155.3840.1 ID=mRNA_E-fasciculatus_F_contig155.3840.1|Name=mRNA_E-fasciculatus_F_contig155.3840.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig155:6038..6971+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATACCACGTCGGGTCATGGCCCTCATGACTTGAAAGAGTTGCTCGA
CTCCTTGGTGGAGCACACAGAAGATGATGGTCGATGAATACCACGTCGGG
TCATGGCCCTCATGACTTGAAAGAGTTGCTCGACTCCTTGGTGGAGCACA
CAGAAGATGATGGTCGGCCTGTCCTGTACCTGAAGGACGATGGAGAGGGG
CTCCAGCTTCAGGACGAGTGGGACCAGCGAGAGATGCTCCAAACCCAGCA
GGCACGGCGCCGGGACGCCGATGCAAGGACTCGCGCGGAGCTTGAAGCGT
GGGGATGCGAAACGGATGCCACGGGGGCAGTTATTCCATCTGGTGGGAGA
TCAGACGACTCGGCTCTGGGCGTTGGGGGCACAATGGCTCGTGAAACGCG
GATGGTGCCATTTACTCCAGTGCCCGATGAAGGCTGGCAGGCCTGTCCTG
TACCTGAAGGACGATGGAGAGGGGCTCCAGCTTCAGGACGAGTGGGACCA
GCGAGAGATGCTCCAAACCCAGCAGGCACGGCGCCGGGACGCCGATGCAA
GGACTCGCGCGGAGCTTGAAGCGTGGGGATGCGAAACGGATGCCACGGGG
GCAGTTATTCCATCTGGTGGGAGATCAGACGACTCGGCTCTGGGCGTTGG
GGGCACAATGGCTCGTGAAACGCGGATGGTGCCATTTACTCCAGTGCCCG
ATGAAGGCTGGCAGGTTGTTTCGGACTTGCAAGCCGGGCAGAGGATTGTG
CGTCAGCTGGCGTGCGTCAATGGCATCGAGGCCGACGAGCTGACGCTGGC
AGAGGTGGGTGTCCAGGAGTTGGCGTGGCAGCGTTCTGGGCATTCGCCCG
TCGGTGCTTGGTTGTTGTGAGTTGTTTCGGACTTGCAAGCCGGGCAGAGG
ATTGTGCGTCAGCTGGCGTGCGTCAATGGCATCGAGGCCGACGAGCTGAC
GCTGGCAGAGGTGGGTGTCCAGGAGTTGGCGTGGCAGCGTTCTGGGCATT
CGCCCGTCGGTGCTTGGTTGTTGTGA
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