mRNA_E-fasciculatus_F_contig15489.3833.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15489.3833.1
Unique NamemRNA_E-fasciculatus_F_contig15489.3833.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: D7FLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX1_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 2.230e-86
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSSR 399
            MDDLKYALGFVC+FSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQ+  R
Sbjct:    1 MDDLKYALGFVCIFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQLQRR 133          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A835ZE95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE95_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.200e-45
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393
            +DDLKYALG V  FS  +AV  G  +GGN GAS TY FA++PI+FLGIGS++PG+I A IN  + +   +++ RRV HEAAHFL+GYLCGLPIKSY  DG TT +EF+D+AEGD +    + T  E+D VS
Sbjct:    3 LDDLKYALGAVVAFSAISAVASGVIVGGNTGASLTYLFAIIPILFLGIGSSSPGIIVAAINLFKIRFDSEFQSRRVHHEAAHFLAGYLCGLPIKSYTVDGATTQIEFFDTAEGDQAVIGRQLTRPEIDPVS 133          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S2V1Y0_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.770e-38
Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGD--MSGRAMKFTPEEV 381
            +DDLK+++ +V + SFA AV  G  IGGNVGA+ TY FA++PI+FLG+GSTAPG+I+A I+ V+ ++   ++ERRVRHEAAHFL GYL G PIKSYKA G T  VEFYDS +GD  ++    + T E+V
Sbjct:  167 LDDLKFSILYVTMGSFALAVLSGIVIGGNVGATLTYLFAVIPILFLGVGSTAPGLISAGIDAVKSRADPTFDERRVRHEAAHFLVGYLLGYPIKSYKASGSTNEVEFYDSVDGDDYIANPGAQLTKEQV 295          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S3UVY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY9_HETAK)

HSP 1 Score: 133 bits (335), Expect = 7.560e-35
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    4 DDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGD 342
            DDL+++L  VC+ SF  A G G  IGGNVGA+ TY FA++PI+FLG+GSTAPG+IT+ I   +  +  D+ ERR+RHEAAHFL GY  G PI+SY ++G    VEFYD+  GD
Sbjct:  182 DDLRWSLVVVCLGSFILAAGSGIVIGGNVGATLTYLFAVIPILFLGVGSTAPGIITSAIEGFKTNTDSDFNERRIRHEAAHFLVGYALGFPIRSYTSEGPACEVEFYDTPAGD 294          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S2C0S6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0S6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.250e-31
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAM--KFTPEEVDQVS 393
            +D+LK AL  V  FS   AV  G  +GGN GA+ TY FA+LPI+FLG+GSTAPG+I+AVI   + +    Y ERR++HEAAHFL GYLCG+PI+ Y  DG    V  YD+ +G ++   M  + T +E + +S
Sbjct:   86 LDELKAALFAVTAFSSIMAVLSGVVVGGNAGATLTYLFAVLPIIFLGVGSTAPGLISAVIEVGKTRLDPKYGERRIKHEAAHFLMGYLCGVPIQGYDVDGALPEVTLYDTRKGALTRAPMDMRLTRDEANGLS 218          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S4HX10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX10_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.190e-26
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYE--ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393
            +DD K A   V + S  AA+   A +  NVGA+  Y FAL+P+ F+GIGSTAPG+I   I++ +  S D  +  +R  RHEA HFL GYLCGLP+K Y   D G   VEF+ SAEG+  GR  +FT EE+  +S
Sbjct:   74 LDDFKDATIAVTLGSTVAAIASLALLPENVGATLCYLFALIPVGFIGIGSTAPGIIAGAISSFQGTSDDQAQRDDRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALS 205          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S3V807_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V807_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.050e-25
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDD--YEERRVRHEAAHFLSGYLCGLPIKSYKA-DGGTTLVEFYDSAEGDMSGRAMK 363
            ++D KYA  +V   S  A +   A +  N GA+F Y FAL+PI+FL +GS+APG+I   I   +    D    E+R  RHEA HFL GYLCGLPIKSY+A D G   VEFY + +G+ +GR ++
Sbjct:  192 LEDFKYATLWVTGGSTVAGIASLALLPENTGATFCYIFALIPILFLAVGSSAPGIIAGAIKGFKENKDDKAAQEDRICRHEAGHFLCGYLCGLPIKSYQANDSGIPCVEFYPTTDGNFAGRELE 315          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S4MBA1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBA1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.930e-25
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYE--ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393
            +DD K A   V + S  AA+   A +  NVGA+  Y FAL+P+ F+GIGSTAPG+I   I++ +  S D  +  +R  RHEA HFL GYLCGLP+K Y   D G   VEF+ SAEG+  GR  +FT EE+  +S
Sbjct:  186 LDDFKDATIAVTLGSTVAAIASLALLPENVGATLCYLFALIPVGFIGIGSTAPGIIAGAISSFQGTSDDQAQRDDRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALS 317          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7S1VQE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQE5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.870e-23
Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKS--QDDYEERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSS 396
            MDD KYA  +V        V   A +  NVGA+  Y  A++PI+FLG+GSTAPG+I   I + +  +  QD   +R  RHEA H L GYLCGLP+K Y  +D G   VEF+ ++EG ++GR  +F PEE+  +S+
Sbjct:  189 MDDFKYATLYVTGTCSVLGVAALAFLPENVGATVCYAVAVIPILFLGVGSTAPGLIANAIASSKGTADDQDQRFDRICRHEAGHMLCGYLCGLPVKGYSMSDSGVPCVEFHPTSEGPVTGR--EFDPEEIAALST 321          
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Match: A0A7R9VLF5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLF5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.090e-23
Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDY--EERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393
            +DD K A   V + S   A+   A +  N+GA+  Y  AL+P+ F+ IGSTAP +I   I + +  + D    E+R  RHEA HFL GYLCGLP+K+Y   D G   VEF+ SAEG+ SGR  +FT EE+  +S
Sbjct:   34 LDDFKDATIAVTLGSTILAIAALAVLPENIGATVCYLIALVPVGFIAIGSTAPSIIAGAIASFQGTADDQTQREDRICRHEAGHFLCGYLCGLPVKAYSIGDTGFPCVEFHPSAEGEASGR--EFTSEEIAALS 165          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15489.3833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLX1_ECTSI2.230e-8696.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE95_9STRA5.200e-4557.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1Y0_9STRA4.770e-3856.59Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S3UVY9_HETAK7.560e-3555.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2C0S6_9STRA1.250e-3148.87Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4HX10_9STRA2.190e-2647.76Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3V807_9STRA3.050e-2546.77Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S4MBA1_9STRA3.930e-2547.76Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1VQE5_9STRA2.870e-2344.44Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7R9VLF5_9STRA3.090e-2344.78Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15489contigE-fasciculatus_F_contig15489:576..1777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog159749.K0TKC4
EggNOG OGs28PSE@1,2QWEW@2759,2XC5J@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_002700.1
Exons2
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928025.248597-CDS-E-fasciculatus_F_contig15489:575..7701622928025.248597-CDS-E-fasciculatus_F_contig15489:575..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15489 576..770 -
1695995793.106486-CDS-E-fasciculatus_F_contig15489:575..7701695995793.106486-CDS-E-fasciculatus_F_contig15489:575..770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15489 576..770 -
1622928025.2604108-CDS-E-fasciculatus_F_contig15489:1573..17771622928025.2604108-CDS-E-fasciculatus_F_contig15489:1573..1777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15489 1574..1777 -
1695995793.1185966-CDS-E-fasciculatus_F_contig15489:1573..17771695995793.1185966-CDS-E-fasciculatus_F_contig15489:1573..1777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15489 1574..1777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15489.3833.1prot_E-fasciculatus_F_contig15489.3833.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15489 576..1777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15489.3833.1

>prot_E-fasciculatus_F_contig15489.3833.1 ID=prot_E-fasciculatus_F_contig15489.3833.1|Name=mRNA_E-fasciculatus_F_contig15489.3833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=133bp
MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGS
TAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADG
GTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSSR
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mRNA from alignment at E-fasciculatus_F_contig15489:576..1777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15489.3833.1 ID=mRNA_E-fasciculatus_F_contig15489.3833.1|Name=mRNA_E-fasciculatus_F_contig15489.3833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1202bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15489:576..1777- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGACCTCAAGTACGCCCTCGGGTTCGTTTGCGTTTTCTCCTTCGC GGCCGCGGTGGGTGTCGGTGCTGCCATCGGGGGCAACGTGGGAGCTTCGT TCACGTACTTCTTCGCGCTCCTGCCGATCGTTTTCCTCGGGATCGGGTCC ACGGCGCCGGGGGTGATCACGGCCGTTATCAACAACGTCCGGAGGAAGTC CCAGGTAAGAGTCATTATCTCTTGTGTTTCGGTCTGTCTGTTTGTGTGTC TGCCTGTCTGCCTGTCGCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTTGG CATTCATTGTACATGTTTGTCTAATGTGCGTGAGAGTGTGGGTGTTTTTG TTCTTGCGTCAACCACGCGAACCGGTTGACCAATGAAAAGATCGCCAATC TCAGCGAGACTACGAAGGCTAGCAACGCTACGAAAGGTTCTGCGAGAATA CCCATCGGTGTCGGACCCGGCGTTTGACACATTATGGCATTTCTGGTAGG TGCCGATAAACGAACGCCACCGATCGACCCAGCGATTCAGTAGCCCTCGC CCCGTGCCCCTTCAGAACCCTACACATGGCCAGAAGACTAATGGCGAGAT TATCCGTCAAGGGTAGAATCAATGCGCTCCGTTGCCGGCGGGAAGGAAGC GTGGTCAACGGTCAATTTTTCAAAGACTTTCCCCCTGTCGTATCTGGTAG TGGCACAGCACACGCAAGAATGATAGAATGATGACCAAATTCAGGTTCAC TATATTACTATTATGAAACGTATCTAGCCTGGGCCGGCGAAGCACCCGGC ATATCGCCTCGCTGTCGTAGAAGTACGAAGTCGTTGGTCTACCAACCACG GCATGCGTTTGACATGAGTACCCCGCCCACACCACTGCTGTCGTGGTCGC TGTGTGTTGTCAGGACGATAGAAGGCCTAAGGGCTACCGACTACTTGATG CGTTTACCTGACTTTGAACCCCCCTCCCCCTACTACTTGTCCGTTGTGTG TTATCAGGACGACTACGAAGAGCGACGCGTGCGCCACGAGGCCGCCCACT TCTTGTCGGGCTACCTTTGCGGCCTGCCGATCAAGAGCTACAAGGCCGAC GGGGGGACTACTCTCGTGGAGTTCTACGACTCGGCGGAGGGGGACATGTC CGGGCGGGCGATGAAGTTTACCCCGGAGGAGGTTGACCAGGTCAGCTCTC GT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15489:576..1777-

>mRNA_E-fasciculatus_F_contig15489.3833.1 ID=mRNA_E-fasciculatus_F_contig15489.3833.1|Name=mRNA_E-fasciculatus_F_contig15489.3833.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15489:576..1777- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGACCTCAAGTACGCCCTCGGGTTCGTTTGCGTTTTCTCCTTCGC
GGCCGCGGTGGGTGTCGGTGCTGCCATCGGGGGCAACGTGGGAGCTTCGT
TCACGTACTTCTTCGCGCTCCTGCCGATCGTTTTCCTCGGGATCGGGTCC
ACGGCGCCGGGGGTGATCACGGCCGTTATCAACAACGTCCGGAGGAAGTC
CCAGATGGACGACCTCAAGTACGCCCTCGGGTTCGTTTGCGTTTTCTCCT
TCGCGGCCGCGGTGGGTGTCGGTGCTGCCATCGGGGGCAACGTGGGAGCT
TCGTTCACGTACTTCTTCGCGCTCCTGCCGATCGTTTTCCTCGGGATCGG
GTCCACGGCGCCGGGGGTGATCACGGCCGTTATCAACAACGTCCGGAGGA
AGTCCCAGGACGACTACGAAGAGCGACGCGTGCGCCACGAGGCCGCCCAC
TTCTTGTCGGGCTACCTTTGCGGCCTGCCGATCAAGAGCTACAAGGCCGA
CGGGGGGACTACTCTCGTGGAGTTCTACGACTCGGCGGAGGGGGACATGT
CCGGGCGGGCGATGAAGTTTACCCCGGAGGAGGTTGACCAGGTCAGCTCT
CGTGACGACTACGAAGAGCGACGCGTGCGCCACGAGGCCGCCCACTTCTT
GTCGGGCTACCTTTGCGGCCTGCCGATCAAGAGCTACAAGGCCGACGGGG
GGACTACTCTCGTGGAGTTCTACGACTCGGCGGAGGGGGACATGTCCGGG
CGGGCGATGAAGTTTACCCCGGAGGAGGTTGACCAGGTCAGCTCTCGT
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