mRNA_E-fasciculatus_F_contig15478.3831.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15478.3831.1
Unique NamemRNA_E-fasciculatus_F_contig15478.3831.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: D7G3J5_ECTSI (GDP-mannose 6-dehydrogenase n=6 Tax=Phaeophyceae TaxID=2870 RepID=D7G3J5_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 2.510e-162
Identity = 228/237 (96.20%), Postives = 233/237 (98.31%), Query Frame = 1
Query:    1 MSSLASAASRSAATGRKESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 711
            MSSLA+AASRSAA+G+KESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMN AGIPCCHPD CPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLI QSTG+APIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDV+ARM NAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP
Sbjct:    1 MSSLATAASRSAASGKKESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNAAGIPCCHPDNCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLIEQSTGIAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVRARMTNAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 237          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: D7FM80_ECTSI (GDP-mannose 6-dehydrogenase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D7FM80_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 8.340e-127
Identity = 177/221 (80.09%), Postives = 196/221 (88.69%), Query Frame = 1
Query:   49 KESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 711
            KE+++Q+GCGVVGGAYAKAY HHGF + GFDVVPAII+KMN AG+ C HPD CP+DLN +IVLLSVPTPLIKETQRLDMKYVWST+PLVVKLI QS+G+ PI VIRSTVPPG T KW A V+ KTDKPF VAFQPEFLRAVSCEEDARAPWQ+VFG     +D +ARM+N FL+FVGRDE+KLTVL IAEAEFMKLVHNYANGLKISFANCIYGLAHELDP
Sbjct:    4 KENVVQIGCGVVGGAYAKAYVHHGFSLTGFDVVPAIIDKMNDAGVKCFHPDDCPSDLNADIVLLSVPTPLIKETQRLDMKYVWSTIPLVVKLIEQSSGLTPILVIRSTVPPGTTLKWEAEVRAKTDKPFQVAFQPEFLRAVSCEEDARAPWQIVFGCAKDADDTRARMSNCFLDFVGRDENKLTVLTIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 224          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A6H5KTU6_9PHAE (UDPG_MGDP_dh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU6_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 7.560e-72
Identity = 120/197 (60.91%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  121 FEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 711
            + + GFDVVPAII+KMN AG+ C HPD CP+DLN +IVLLSVPTPLIKETQRLDMK                                                  VAFQPEFLRAVSCEEDARAPWQ+VFG     +D +ARM+N FL+FVGRDE+KLTVL IAEAEFMKLVHNYANGLKISFANCIYGLAHELDP
Sbjct:    4 YSLTGFDVVPAIIDKMNDAGVKCFHPDDCPSDLNADIVLLSVPTPLIKETQRLDMK--------------------------------------------------VAFQPEFLRAVSCEEDARAPWQIVFGCAKDADDTRARMSNCFLDFVGRDENKLTVLTIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP 150          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A3G4ZX75_9VIRU (GDP-mannose 6-dehydrogenase n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZX75_9VIRU)

HSP 1 Score: 112 bits (281), Expect = 4.560e-26
Identity = 70/211 (33.18%), Postives = 116/211 (54.98%), Query Frame = 1
Query:   46 RKESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFAN 678
            +K  + Q+G GVVGG++  +YK  G +V G +    ++EK           D   +  + + + LS+ TPL + TQ+L++KY++S++P V  ++  S     + V+RSTVPP  T  +   ++       +V FQPE+LRA S ++D+ AP  ++ G   G  DV + +   + +F+ R+  K+  + I EAE  KL HN  N  KIS+ N
Sbjct:   19 KKFKVTQIGLGVVGGSFGLSYKKVGCDVVGIEASKELVEKFKKEFETYHISDDLSHVKDVDFIFLSINTPLDEATQKLNLKYLFSSIPNVCTIVKNSPKA--LVVVRSTVPPTTTNTYKKELEALCGFKVNVLFQPEYLRAYSAKKDSEAPLYIIIGRDEGT-DVSS-LIELYSKFIARE--KIEEMTIEEAELQKLFHNCFNATKISYFN 223          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A814QHR5_9BILA (UDP-glucose 6-dehydrogenase n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A814QHR5_9BILA)

HSP 1 Score: 101 bits (251), Expect = 7.270e-22
Identity = 72/232 (31.03%), Postives = 119/232 (51.29%), Query Frame = 1
Query:   52 ESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCP-----NDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVI-RSTVPPGMTKKWMAAVKE-KTDKP--FHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFV----GRDESKLTVLNIAE-AEFMKLVHNYANGLKISFANCIYGLAHEL 705
            ++II +GCG+VG A   +    G  + G D       +M      C  PD+       ND+  +++L+++PTP    T  L  + +  ++ L+  LI +     P+ +I +STV  G ++K    +K   TD    +H+ + PEFLRA   + DA  P + +FG   G+  +        LE +    G   S +T+++ +E AEF+KLVHN++N ++ISF+NC   LA  L
Sbjct:    2 KNIICIGCGIVGYATCLSLSSLGHSMVGIDTCMIARNRMINMNFSCFSPDEVMFEEKMNDILVDVILIALPTPFCSLTNTLSDESIMLSIGLISYLIKKKKDDNPVMIILQSTVSVGTSRKLFNGLKLFNTDDNCNYHLFYHPEFLRAEKSQYDALHPIKQIFGLTDGKPKMDLSYYENILEEIFSPIGSFRSSITMMSSSEEAEFLKLVHNFSNAMRISFSNCCAHLASLL 233          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A0G0IL69_9BACT (UDP-glucose 6-dehydrogenase n=1 Tax=Parcubacteria group bacterium GW2011_GWD2_38_11 TaxID=1618941 RepID=A0A0G0IL69_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.140e-19
Identity = 74/214 (34.58%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   58 IIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPEI--VLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTD-----KPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFAN 678
            I  +G G+VG A  K     G  V  +D  P II+ +   G    H +        EI   ++SVPTP   +  R+++ ++   +  + K I + T   PIFV+RSTVPPG T+    +V EK       K F +   PEFLR VS E+D   PW VV G     +D  A +A A +  + +    +  +++ EAE MK  HN  N  KISF N
Sbjct:    9 IAIIGSGIVGQATGKGLARAGHNVLFYDKNPNIIKTLKNDGYHADHIENLSTVETDEIEIFMISVPTPT--KEGRVELSFLNEALTSLGKAIKE-TEKNPIFVVRSTVPPGTTENLAVSVLEKESGKKAGKDFGICMNPEFLREVSAEKDFMNPWMVVIGC----DDKSAGLALAKIYKIFK--CPIVHMSLKEAEMMKYAHNLLNATKISFFN 213          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: UPI00166F86CE (UDP-glucose/GDP-mannose dehydrogenase family protein n=1 Tax=Streptomyces ruber TaxID=83378 RepID=UPI00166F86CE)

HSP 1 Score: 85.5 bits (210), Expect = 4.680e-16
Identity = 75/228 (32.89%), Postives = 104/228 (45.61%), Query Frame = 1
Query:   58 IIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNPE-IVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTD-----KPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIY----GLAHELDP 711
            I  VG GVVG A  K + H G EV   D+    +E + + G+     D    D  P+  V L++PTP +    R D+         V K +  ++G   + V+RSTVPPG T+  +  + EK       + FH+A  PEFLRA S  ED + PW  V            R++     F G      T  + A AE +K  HN  N  KISF N ++     L  +LDP
Sbjct:    4 IFIVGSGVVGTATGKGFLHAGHEVTFIDIAHRRLEYLRSQGLDAR--DTLDLDNEPDSFVFLTLPTPNVGH--RYDLSAFEDGTTTVGKALGTASG-THVVVVRSTVPPGTTEGLVQPLLEKHSGRTLGEDFHLASNPEFLRAASAVEDFKHPWMTVIASRSTR--TVERLSELLAPFGGELR---TFDDPAAAEMVKCAHNIFNATKISFWNEMWLVSQALGLDLDP 221          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A7C6VMD1_9RHOO (UDP-glucose/GDP-mannose dehydrogenase family protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7C6VMD1_9RHOO)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-15
Identity = 70/222 (31.53%), Postives = 108/222 (48.65%), Query Frame = 1
Query:   58 IIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNP-EIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKP-----FHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHEL 705
            I+ VG GVVG A  K +   G  VR  D+ P  I K+   G+     D+   D N  ++V+L+V TP +     LD  Y+ +    V + +  ++    + V+RSTVPP  T++ +  + E+         F VA  PEFLRAVS E+D   PW  + G    E+  K  +   +  F     + +      EAE +K V+N  N +KIS+ N +Y +  +L
Sbjct:    4 IVVVGSGVVGQATGKGFAKKGHSVRYVDINPTTIAKLRAQGLNAMTADEV--DWNTVDLVMLAVSTPSVGGKIVLD--YIEAAALDVGRGLATTSNYITV-VVRSTVPPTSTEQRITPILEQASGKRAGVGFGVAMNPEFLRAVSNEQDFARPWITIIGTT--EQHTKDMLDELYKPF----GALIVHCTPTEAEMIKYVNNVYNAVKISYFNEVYAICQKL 214          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: UPI0019C89DED (UDP-glucose/GDP-mannose dehydrogenase family protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI0019C89DED)

HSP 1 Score: 76.3 bits (186), Expect = 1.230e-12
Identity = 67/222 (30.18%), Postives = 107/222 (48.20%), Query Frame = 1
Query:   58 IIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCPNDLNP-EIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTD-----KPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHEL 705
            I+ VG GVVG A  K +   G +V   D+ P  I ++   G+          D N  ++V+L+V TP +     LD  Y+ +    V + I  +     + V+RSTVPP  T++ +  + E+       + F VA  PEFLRAV+ E+D   PW  + G +   E   A + +   +  G   + +      EAE +K V+N  N +KIS+ N +Y +  +L
Sbjct:    4 IVIVGSGVVGQATGKGFSKKGHKVSFVDINPQTIARLRGEGLDAMTAADV--DWNAVDLVMLAVSTPSVNAKIVLD--YIEAAAFDVGRGIASTDNYITV-VVRSTVPPTTTEQRITRILEQASGKRVGEGFGVAMNPEFLRAVTNEQDFARPWITILGTL---EQRTAEILDKLYKPFG---AMIVHCTPTEAETIKYVNNIYNAVKISYFNEVYTICQQL 214          
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Match: A0A8K0TLR3_9PEZI (Nucleotide sugar dehydrogenase n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TLR3_9PEZI)

HSP 1 Score: 75.5 bits (184), Expect = 2.130e-12
Identity = 71/225 (31.56%), Postives = 104/225 (46.22%), Query Frame = 1
Query:   58 IIQVGCGVVGGAYAKAYKHHGFEVRGFDVVPAIIEKMNTAGIPCCHPDKCP-NDLNPEIVLLSVPTPLIKETQRLDMKYVWSTVPLVVKLINQSTGVAPIFV---IRSTVPPGMTKKWMAAVKEKTD-----KPFHVAFQPEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLTVLNIAEAEFMKLVHNYANGLKISFANCIYGLAHEL 705
            I+ VG GVVG A  K +   G  VR  D   A IEK+ + G+      +   ND+  +IV+L+V TP        D + V   +      + +       FV   +RSTVPP  T+K +  + E+       + F VA  PEFLRAVS E+D   PW  V G    +    A M   +  F     + +    +AEAE +K V N  N +KIS  N ++ +  ++
Sbjct:    4 IVIVGSGVVGQATGKGFAKKGHSVRFVDNDSATIEKLLSTGLVAMTAFQVDWNDV--DIVMLAVRTPTA------DGRVVLDHIEAAALDVGRGLATTNNFVTVVVRSTVPPSTTEKRITPILERASGKRLGQGFGVAMNPEFLRAVSNEQDFAQPWITVVGAK--DPRTTAIMDKLYQPF----GAPVLHCALAEAEMIKYVSNTYNAVKISNFNEVHAICSKM 214          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15478.3831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3J5_ECTSI2.510e-16296.20GDP-mannose 6-dehydrogenase n=6 Tax=Phaeophyceae T... [more]
D7FM80_ECTSI8.340e-12780.09GDP-mannose 6-dehydrogenase n=3 Tax=Phaeophyceae T... [more]
A0A6H5KTU6_9PHAE7.560e-7260.91UDPG_MGDP_dh domain-containing protein n=1 Tax=Ect... [more]
A0A3G4ZX75_9VIRU4.560e-2633.18GDP-mannose 6-dehydrogenase n=1 Tax=Edafosvirus sp... [more]
A0A814QHR5_9BILA7.270e-2231.03UDP-glucose 6-dehydrogenase n=4 Tax=Adineta steine... [more]
A0A0G0IL69_9BACT1.140e-1934.58UDP-glucose 6-dehydrogenase n=1 Tax=Parcubacteria ... [more]
UPI00166F86CE4.680e-1632.89UDP-glucose/GDP-mannose dehydrogenase family prote... [more]
A0A7C6VMD1_9RHOO1.120e-1531.53UDP-glucose/GDP-mannose dehydrogenase family prote... [more]
UPI0019C89DED1.230e-1230.18UDP-glucose/GDP-mannose dehydrogenase family prote... [more]
A0A8K0TLR3_9PEZI2.130e-1231.56Nucleotide sugar dehydrogenase n=1 Tax=Plectosphae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15478contigE-fasciculatus_F_contig15478:1..2094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog1504319.GM45_2175
Preferred namerkpK
KEGG rclassRC00291
KEGG koko:K00012
KEGG ReactionR00286
KEGG Pathwayko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG ModuleM00014,M00129,M00361,M00362
EggNOG free text desc.UDP binding domain
EggNOG OGs2GJQB@201174,3UW6R@52018,COG1004@1,COG1004@2
EC1.1.1.22
COG Functional cat.M
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size711
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15478.3831.1prot_E-fasciculatus_F_contig15478.3831.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15478 1..2094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928024.7310956-CDS-E-fasciculatus_F_contig15478:0..671622928024.7310956-CDS-E-fasciculatus_F_contig15478:0..67Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 1..67 -
1695995792.9956162-CDS-E-fasciculatus_F_contig15478:0..671695995792.9956162-CDS-E-fasciculatus_F_contig15478:0..67Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 1..67 -
1622928024.7447414-CDS-E-fasciculatus_F_contig15478:591..8641622928024.7447414-CDS-E-fasciculatus_F_contig15478:591..864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 592..864 -
1695995793.0086834-CDS-E-fasciculatus_F_contig15478:591..8641695995793.0086834-CDS-E-fasciculatus_F_contig15478:591..864Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 592..864 -
1622928024.7621744-CDS-E-fasciculatus_F_contig15478:1723..20941622928024.7621744-CDS-E-fasciculatus_F_contig15478:1723..2094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 1724..2094 -
1695995793.018523-CDS-E-fasciculatus_F_contig15478:1723..20941695995793.018523-CDS-E-fasciculatus_F_contig15478:1723..2094Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15478 1724..2094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15478.3831.1

>prot_E-fasciculatus_F_contig15478.3831.1 ID=prot_E-fasciculatus_F_contig15478.3831.1|Name=mRNA_E-fasciculatus_F_contig15478.3831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp
MSSLASAASRSAATGRKESIIQVGCGVVGGAYAKAYKHHGFEVRGFDVVP
AIIEKMNTAGIPCCHPDKCPNDLNPEIVLLSVPTPLIKETQRLDMKYVWS
TVPLVVKLINQSTGVAPIFVIRSTVPPGMTKKWMAAVKEKTDKPFHVAFQ
PEFLRAVSCEEDARAPWQVVFGYMPGEEDVKARMANAFLEFVGRDESKLT
VLNIAEAEFMKLVHNYANGLKISFANCIYGLAHELDP
back to top

mRNA from alignment at E-fasciculatus_F_contig15478:1..2094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15478.3831.1 ID=mRNA_E-fasciculatus_F_contig15478.3831.1|Name=mRNA_E-fasciculatus_F_contig15478.3831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2094bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15478:1..2094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCTCTCTTGCTTCCGCTGCTTCCAGGTCTGCCGCCACCGGCAGGAA GGAGTCCATCATCCAGGTCGGCTGCGGCGTCGTGGGCGGCGCCTACGCCA AGGCCTACAAGCACCACGGCTTCGAGGTGCGCGGCTTCGACGTCGTGCCG GCCATCATCGAGAAGATGAACACCGCGGGCATCCCCTGCTGCCACCCTGA CAAGTGCCCCAACGACCTCAACCCCGAGATCGTCCTCCTGTCGGTGCCCA CGCCGCTCATCAAGGAGACCCAGCGCCTCGACATGAAGTACGTCTGGTCG ACCGTCCCCCTGGTGGTCAAGCTCATCAACCAGTCCACCGGCGTCGCGCC CATCTTCGTGATCCGATCCACGTGAGTGTTCTGTAGACGTGTACAAAGAA AATCGGAGCTTTCGGTTTAATTCTGCCACATCATCGCTCTTCGTGCCTGC TGTGTTCCTTGTGCGTACACAGCACATCATCACCGCCCCGGTATATCTCC TGTCTTGCACTGCTGCCAACAGTGTCTCTCGCGTTGCGGTTGTCTGTAGC CCCCCTCGTGCGTACGGATCCCGAGAGGAGATGCTTGTACATCGTGTGCT TGTCGATTGGTTCTTGTAGGCTGTACACACGTACAGACCCATCCATCTAT CTTGCATGCAAGATCGATCTCCGTGTTGAGGGTTTGAGCGCTTCATGTTT CCGACTCATGCAGCCTGCCGCAATAGCTCGCGGCTTGCGACGGCTAGCGG CAAGGAGTCTTGTTTGGCCGCGCCTATGGCATGATCAAATGCGGCTGTCG CGTCCTGGTGTCCTTGCGTCGACTGTCGAATTGTACAATAGCGTACCTCG CATTTTCCATCAAAGTGTTCTTTTATGGAAAAGAACGTAGTGCACCCAAC CAACACGTAATGTAATTATCCCGAACACGGGTGGATGGAACAATTCCACG GTTTTGAGATCTGTTGCAGCATGCCAGCCCTTTGGGTCCCGAGTTCGGAC AACTCCAAAAGTTGTAGCATACCTTTACATCTTTTACATCCTTGATACAC CTTAGAGCTAGGCGTGTCTTGTGAAAACACGCACGTATGTAAGCTGGCGT CCATGTGCATGGCATCGGCGTAATGTGCATCTTCCATCAAAAGAACTAGC TGTGCATCCATCAATACTCCATCAACTCACTGCTGCACTTGCCGCCCTGA TTTCCTTTCATGCAACGCGTTCTAATACAGGGTGCCCCCCGGCATGACCA AGAAGTGGATGGCGGCCGTCAAGGAGAAGACCGACAAGCCCTTCCACGTG GCCTTCCAGCCCGAGTTCCTCCGCGCCGTCTCTTGCGAGGAGGACGCCCG CGCGCCGTGGCAGGTGGTGTTCGGCTACATGCCCGGAGAGGAGGACGTGA AGGCCCGAATGGCCAACGCGTTCCTCGAGTTCGTCGGCCGCGACGAGTCC AAGCTCACCGTGCTCAACATCGCGGAGGCCGAGTTCATGAAGCTTGTGCA CAAGTGAGTTTGATTTTTTGTTGTTTTGGTTTTGTCTACAATATTAGTGT TGTGTGTACGGTGCACAGTTGTAGCGTGTTTACGGTGCACAGTTATTTTT TTATATTTGTCTACATTATTGTAATGTGTTAACGGCAACCATAGCCAGCC GCGTATGCATAGTACAAATACGCAGTGCCGCCCCTTCCCCGAACACCAAA TATAAATTGGGGGGGGTATATGTGCACGTGCAAATGCGTTCAACACAGAT AACGCATTAAAGTATGTTTGGTGTATCGTGTGTTGTGTTTTAGTAAAGTT GACACATGTACTTGATAGGCCCGACCGTGTGTTGCAGTCAAAGAAAAGTG TGCCTTTCCCCCCGTCGCCACAACGTGTACGGATCCGAGGTGTTTTGTGT CATGGTTGATCTGTCTTTCATTCACCACTCGACCCGATAAATAACCGGCC GCAATGATCACGATACTCGATGCTAACGCTGCTCCCGTTCCCCTTATTCT CCCCCGCTCGTCCTTGACGTGCTACAGCTACGCGAACGGGCTCAAGATCT CCTTCGCCAACTGCATCTACGGCCTCGCCCACGAGCTCGACCCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15478:1..2094-

>mRNA_E-fasciculatus_F_contig15478.3831.1 ID=mRNA_E-fasciculatus_F_contig15478.3831.1|Name=mRNA_E-fasciculatus_F_contig15478.3831.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15478:1..2094- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCTCTCTTGCTTCCGCTGCTTCCAGGTCTGCCGCCACCGGCAGGAA
GGAGTCCATCATCCAGGTCGGCTGCGGCGTCGTGGGCGGCGCCTACGCCA
AGGCCTACAAGCACCACGGCTTCGAGGTGCGCGGCTTCGACGTCGTGCCG
GCCATCATCGAGAAGATGAACACCGCGGGCATCCCCTGCTGCCACCCTGA
CAAGTGCCCCAACGACCTCAACCCCGAGATCGTCCTCCTGTCGGTGCCCA
CGCCGCTCATCAAGGAGACCCAGCGCCTCGACATGAAGTACGTCTGGTCG
ACCGTCCCCCTGGTGGTCAAGCTCATCAACCAGTCCACCGGCGTCGCGCC
CATCTTCGTGATCCGATCCACATGAGCTCTCTTGCTTCCGCTGCTTCCAG
GTCTGCCGCCACCGGCAGGAAGGAGTCCATCATCCAGGTCGGCTGCGGCG
TCGTGGGCGGCGCCTACGCCAAGGCCTACAAGCACCACGGCTTCGAGGTG
CGCGGCTTCGACGTCGTGCCGGCCATCATCGAGAAGATGAACACCGCGGG
CATCCCCTGCTGCCACCCTGACAAGTGCCCCAACGACCTCAACCCCGAGA
TCGTCCTCCTGTCGGTGCCCACGCCGCTCATCAAGGAGACCCAGCGCCTC
GACATGAAGTACGTCTGGTCGACCGTCCCCCTGGTGGTCAAGCTCATCAA
CCAGTCCACCGGCGTCGCGCCCATCTTCGTGATCCGATCCACGGTGCCCC
CCGGCATGACCAAGAAGTGGATGGCGGCCGTCAAGGAGAAGACCGACAAG
CCCTTCCACGTGGCCTTCCAGCCCGAGTTCCTCCGCGCCGTCTCTTGCGA
GGAGGACGCCCGCGCGCCGTGGCAGGTGGTGTTCGGCTACATGCCCGGAG
AGGAGGACGTGAAGGCCCGAATGGCCAACGCGTTCCTCGAGTTCGTCGGC
CGCGACGAGTCCAAGCTCACCGTGCTCAACATCGCGGAGGCCGAGTTCAT
GAAGCTTGTGCACAAGGTGCCCCCCGGCATGACCAAGAAGTGGATGGCGG
CCGTCAAGGAGAAGACCGACAAGCCCTTCCACGTGGCCTTCCAGCCCGAG
TTCCTCCGCGCCGTCTCTTGCGAGGAGGACGCCCGCGCGCCGTGGCAGGT
GGTGTTCGGCTACATGCCCGGAGAGGAGGACGTGAAGGCCCGAATGGCCA
ACGCGTTCCTCGAGTTCGTCGGCCGCGACGAGTCCAAGCTCACCGTGCTC
AACATCGCGGAGGCCGAGTTCATGAAGCTTGTGCACAACTACGCGAACGG
GCTCAAGATCTCCTTCGCCAACTGCATCTACGGCCTCGCCCACGAGCTCG
ACCCCCTACGCGAACGGGCTCAAGATCTCCTTCGCCAACTGCATCTACGG
CCTCGCCCACGAGCTCGACCCC
back to top