mRNA_E-fasciculatus_F_contig1048.383.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1048.383.1
Unique NamemRNA_E-fasciculatus_F_contig1048.383.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1048.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1048contigE-fasciculatus_F_contig1048:9968..10369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_004640.1
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.534891-CDS-E-fasciculatus_F_contig1048:9967..103691622927545.534891-CDS-E-fasciculatus_F_contig1048:9967..10369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1048 9968..10369 +
1695995588.3206725-CDS-E-fasciculatus_F_contig1048:9967..103691695995588.3206725-CDS-E-fasciculatus_F_contig1048:9967..10369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1048 9968..10369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1048.383.1prot_E-fasciculatus_F_contig1048.383.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1048 9968..10369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1048.383.1

>prot_E-fasciculatus_F_contig1048.383.1 ID=prot_E-fasciculatus_F_contig1048.383.1|Name=mRNA_E-fasciculatus_F_contig1048.383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
STLHGCEHDRDSREIMEEFIDQVRGLLPHPKTFWRIMHPAAEKGNSKGWG
MRLRVRRCFCEISGCNESILWRCVRGPTERLFCMRRSTVGLYRGQPADRA
VYATPCFFVLLCAVACTRFRDRVFFVFLAHRHV*
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mRNA from alignment at E-fasciculatus_F_contig1048:9968..10369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1048.383.1 ID=mRNA_E-fasciculatus_F_contig1048.383.1|Name=mRNA_E-fasciculatus_F_contig1048.383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=402bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1048:9968..10369+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCACGTTACATGGTTGTGAGCATGATCGAGATTCGCGAGAGATCATGGA
GGAGTTCATCGATCAAGTCCGGGGCCTGCTGCCACACCCAAAGACTTTCT
GGCGAATAATGCATCCAGCTGCTGAAAAGGGAAATTCCAAGGGATGGGGT
ATGCGTTTGCGTGTTCGACGATGTTTTTGTGAGATTTCAGGTTGCAACGA
ATCAATTTTGTGGCGATGTGTCAGGGGGCCCACCGAGAGGCTGTTTTGCA
TGCGAAGGTCTACCGTTGGGTTATACAGGGGACAGCCGGCAGATCGAGCC
GTGTATGCCACGCCCTGTTTTTTTGTGCTCCTGTGTGCGGTGGCGTGTAC
GCGTTTTCGTGATCGTGTGTTCTTTGTGTTCCTCGCGCACAGGCATGTAT
AG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1048:9968..10369+

>mRNA_E-fasciculatus_F_contig1048.383.1 ID=mRNA_E-fasciculatus_F_contig1048.383.1|Name=mRNA_E-fasciculatus_F_contig1048.383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1048:9968..10369+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCACGTTACATGGTTGTGAGCATGATCGAGATTCGCGAGAGATCATGGA
GGAGTTCATCGATCAAGTCCGGGGCCTGCTGCCACACCCAAAGACTTTCT
GGCGAATAATGCATCCAGCTGCTGAAAAGGGAAATTCCAAGGGATGGGGT
ATGCGTTTGCGTGTTCGACGATGTTTTTGTGAGATTTCAGGTTGCAACGA
ATCAATTTTGTGGCGATGTGTCAGGGGGCCCACCGAGAGGCTGTTTTGCA
TGCGAAGGTCTACCGTTGGGTTATACAGGGGACAGCCGGCAGATCGAGCC
GTGTATGCCACGCCCTGTTTTTTTGTGCTCCTGTGTGCGGTGGCGTGTAC
GCGTTTTCGTGATCGTGTGTTCTTTGTGTTCCTCGCGCACAGGCATGTAT
AGAGCACGTTACATGGTTGTGAGCATGATCGAGATTCGCGAGAGATCATG
GAGGAGTTCATCGATCAAGTCCGGGGCCTGCTGCCACACCCAAAGACTTT
CTGGCGAATAATGCATCCAGCTGCTGAAAAGGGAAATTCCAAGGGATGGG
GTATGCGTTTGCGTGTTCGACGATGTTTTTGTGAGATTTCAGGTTGCAAC
GAATCAATTTTGTGGCGATGTGTCAGGGGGCCCACCGAGAGGCTGTTTTG
CATGCGAAGGTCTACCGTTGGGTTATACAGGGGACAGCCGGCAGATCGAG
CCGTGTATGCCACGCCCTGTTTTTTTGTGCTCCTGTGTGCGGTGGCGTGT
ACGCGTTTTCGTGATCGTGTGTTCTTTGTGTTCCTCGCGCACAGGCATGT
ATAG
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