mRNA_E-fasciculatus_F_contig15471.3828.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 1.510e-138 Identity = 201/212 (94.81%), Postives = 208/212 (98.11%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
+GMDNVRNMVGSPIAGLDP EMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIA+SGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQ+DTV FCKGMLLAFR+LGSRK RQ+ARLMFMIEE+GMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRR+YVGVHPQKQEGKSWVCVTTPAGRL AED
Sbjct: 251 TGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQNDTVAFCKGMLLAFRNLGSRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRNYVGVHPQKQEGKSWVCVTTPAGRLMAED 462
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: R7QAL9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAL9_CHOCR) HSP 1 Score: 269 bits (688), Expect = 7.930e-84 Identity = 134/217 (61.75%), Postives = 164/217 (75.58%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVE-----YVKGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
SGMDNVRNMVGSPIAG+DP+E+VDTR+LC INDMIT+NR+GNPALTNLPRK NI VSG RDD+AHT IND+GL P HP T E+GFNVV+GGFFS++R AE+IP+D+W+ D V FC+ +L+ FRD G RKNR +RLM+M++++ M FRE + E + + VD E A PAP RR+ +GVH QKQEG SWVC PAGRLTAED
Sbjct: 200 SGMDNVRNMVGSPIAGIDPEEIVDTRELCIAINDMITNNRRGNPALTNLPRKFNICVSGSRDDFAHTHINDVGLVPMVHPTTKEVGFNVVIGGFFSIKRNAEAIPMDVWLPYKDVVRFCETLLIWFRDNGDRKNRMSSRLMYMVDKLTMSGFREVIQEEFGSKFRRAVDGGEEY--ATPAP-----RRNVLGVHAQKQEGLSWVCGNVPAGRLTAED 409
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A2V3J4B2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B2_9FLOR) HSP 1 Score: 266 bits (681), Expect = 2.690e-83 Identity = 131/213 (61.50%), Postives = 162/213 (76.06%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKG-VDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
SGMDNVRN+VGSP+AG+DP EMVDTRQLC++INDMITD+RKG P LTNLPRK NIAVSG RDD+AHT INDIGL P AHP+T IGFNVV+GGFFS++R AE++P+D+W+ QSD V FC+ +LL FRD G RKNRQ RLM+M++++GM+ FR+ + + + A + P P E RR+ +GVHPQKQ G SWV PAGRL D
Sbjct: 152 SGMDNVRNLVGSPLAGIDPLEMVDTRQLCHDINDMITDSRKGRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPMAHPQTAHIGFNVVIGGFFSIKRDAEALPMDVWLPQSDVVRFCETVLLWFRDHGDRKNRQATRLMYMVDQLGMKTFRDQIESAMGAPLQRAVKGGPEYDQPAE---RRNVLGVHPQKQPGLSWVAACVPAGRLETAD 361
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A7S0D8G4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8G4_9EUKA) HSP 1 Score: 250 bits (639), Expect = 1.510e-76 Identity = 127/224 (56.70%), Postives = 165/224 (73.66%), Query Frame = 1
Query: 37 NNHSGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAA-----PAPEEA--FSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAEDVS 687
N SGMDNVRN+VG+PIAGLDP EM+DTR LC INDMIT++ KGNPA+TNLPRK NIAVSG RDD+AHT INDIGL P + ETGE+GFNV+VGG+FS++R ESIP+D+W+K D FC+ ML FRD G R +RQKARL+++IE+ G++KFR+TV E D+ F + A P P + +++RD +GVH QKQ+G S+V V P GR+ ++ +
Sbjct: 178 NVQSGMDNVRNLVGNPIAGLDPHEMIDTRPLCKSINDMITNSGKGNPAMTNLPRKFNIAVSGSRDDFAHTTINDIGLCPCPNKETGEMGFNVIVGGYFSIKRVMESIPMDLWVKPEDATDFCEVMLEVFRDNGDRGDRQKARLIWLIEKWGLDKFRDTVKE---AFDAKFPSKAGALISSQPEPWKGTTWAKRDLLGVHEQKQDGLSFVGVNVPVGRILPDEAN 398
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A7S1TF51_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TF51_9RHOD) HSP 1 Score: 248 bits (634), Expect = 6.070e-76 Identity = 119/212 (56.13%), Postives = 156/212 (73.58%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
+GMDNVRN+VGSPIAG+DP+E+ DTR+LC I+DMIT+NR GNP +NLPRK NI VSG RDD+AHT IND+G P H ETGEIGFNVVVGG FS++R S+PL++WI S+ V FC+ +L FRD G+R +RQ AR M+++++ G++ RE V++ + + E QP + EE F RRD +GVHPQKQEG W+ V P GR++A D
Sbjct: 185 TGMDNVRNLVGSPIAGIDPEELFDTRELCANISDMITNNRAGNPQFSNLPRKFNICVSGSRDDFAHTHINDLGFIPVPHRETGEIGFNVVVGGLFSIKRNEMSVPLNLWIHPSNVVEFCRAVLTVFRDHGARVSRQSARFMYLVDQWGVDTLRERVLQAMAVPVDSIEAQPES---EEVFHRRDVLGVHPQKQEGLFWLGVNVPVGRMSAHD 393
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A6S9KFP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KFP9_HETAK) HSP 1 Score: 248 bits (632), Expect = 1.410e-75 Identity = 124/214 (57.94%), Postives = 156/214 (72.90%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSR-KNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAEDV 684
SGMDNVRNMVGSPIAG+DP EM+DTRQLC ++ MIT++ KG P TNLPRK+N A+SG RDDYAHT IND+G QP A+ E G++GFNVVVGG+FS++ A ESIPL+MW+ V + + FRD G R K+RQK R+M +IE++G+E FR VV + +D A E A P PE+ + +RD +G+H QKQEG SWV V PAGRL EDV
Sbjct: 193 SGMDNVRNMVGSPIAGIDPHEMIDTRQLCIDMQKMITNDNKGRPEYTNLPRKMNFAISGSRDDYAHTSINDVGFQPIANAE-GKMGFNVVVGGYFSIKAAVESIPLNMWVPPEAVVPLSEAFIRYFRDNGQRVKDRQKTRMMILIEQMGVEAFRAGVVAELAKLDPAVETFEAVPEPEDVWEKRDLMGIHAQKQEGLSWVGVVVPAGRLFPEDV 405
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A1X6P1I5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1I5_PORUM) HSP 1 Score: 246 bits (629), Expect = 6.150e-75 Identity = 127/215 (59.07%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAA-PAPE--EAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
+GMD+VRNMVGSPIAG+DP EM+DTR+LC E+NDMIT+ RKGNP TNLPRK NI VSG RDD+AHT INDIGL P + + G +GFNVVVGG FS++R AE++P+D W+ + FCK +L FRD G RK RQK RLM+MI++ G + R+ VVE++ G A PA P PE + RRD GVH QKQEG SWV PAGRLTA+D
Sbjct: 213 AGMDSVRNMVGSPIAGIDPHEMIDTRELCTELNDMITNFRKGNPEFTNLPRKFNICVSGSRDDFAHTHINDIGLVPMVNAD-GVVGFNVVVGGMFSIKRDAEAVPMDAWLTPAQVTPFCKALLEVFRDQGDRKIRQKTRLMYMIDQWGADGLRDRVVEHMGGTPFA----PAVIPGPEYDTPWPRRDIQGVHAQKQEGLSWVGCNVPAGRLTADD 422
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: Q7XYQ0_BIGNA (Ferredoxin nitrite reductase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYQ0_BIGNA) HSP 1 Score: 245 bits (625), Expect = 6.590e-74 Identity = 123/228 (53.95%), Postives = 163/228 (71.49%), Query Frame = 1
Query: 37 NNHSGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVK--------GVDSAFEPQPAAPA-----PEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
N SGMDNVRN+VGSPIAG+DP+E+VDTR + +I+ MIT++ KGNP L NLPRK NIAVSG RDD+AHT INDIGL+P + E+GE+GFNV+VGG+FS++R ESIP+D+WIK D FC+ +LL FRD GSR +RQKARL+++IE++GME FR+ + + G +P+P A A P + +RD + VH QKQEG SWV + PAGR+ ++
Sbjct: 230 NVQSGMDNVRNLVGSPIAGIDPEELVDTRDIAKDIDAMITNDGKGNPKLANLPRKFNIAVSGSRDDFAHTSINDIGLRPCPNKESGEMGFNVIVGGYFSIKRVMESIPMDIWIKAEDAARFCEAVLLYFRDNGSRGDRQKARLIWLIEDMGMEGFRQAISDKYDEMFPKKKGGAAIPAQPEPWAVAAGTNTPTQPHKKRDILRVHSQKQEGLSWVGINVPAGRILPDE 457
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A1E7FE99_9STRA (Ferredoxin-nitrite reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE99_9STRA) HSP 1 Score: 240 bits (613), Expect = 5.550e-73 Identity = 123/226 (54.42%), Postives = 157/226 (69.47%), Query Frame = 1
Query: 22 AHNNDNNHSGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMIT----DNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIK--QSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAED 681
A N + S +D+VRNMVGSP+AG+D E+VDTR LCN +ND+I+ +GNP NLPRK NIA+SG RDD+AHT INDIGLQP H ETGE+GFNVV+GGF S++R AES+ MWIK + VTFC+ +L FRD RK+RQKARLM+++E+ G+E F++ V+ VK D E P P E F RR+ +GVHPQKQ GK V + PAGRL+A +
Sbjct: 144 ARNQTSFQSALDSVRNMVGSPLAGIDDHELVDTRVLCNAVNDLISMDPETETRGNPQWANLPRKFNIAISGSRDDFAHTHINDIGLQPCVHAETGEMGFNVVLGGFMSIKRVAESVDSGMWIKADRESVVTFCEAILRIFRDESERKDRQKARLMWLVEKYGVEDFKKAVIAEVKSYDRGVEIFDEQPRPTEKFERRELLGVHPQKQVGKVRVGIMVPAGRLSATE 369
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Match: A0A8J5XYI8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYI8_DIALT) HSP 1 Score: 240 bits (613), Expect = 1.700e-72 Identity = 123/216 (56.94%), Postives = 156/216 (72.22%), Query Frame = 1
Query: 46 SGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAVSGGRDDYAHTMINDIGLQPHAHPET-GEIGFNVVVGGFFSVRRAAESIPLDMWIKQSDTVTFCKGMLLAFRDLGSRKNRQKARLMFMIEEIGMEKFRETVVEYV--KGVDSAFEPQPAAPAPEEAFSRRDYVGVHPQKQEGKSWVCVTTPAGRLTAEDV 684
SG+DNVRN+VGSPIAGLDP E+VDTR +C +IN IT +GNP NLPRK NIAVSG RDD++HT INDIGLQ HP+ E GFN+V+GG+FS++R AESIP+ W+ D F +L FRD G R++RQK RLM+++EE G++ FR V E + +GVD+ + AAP P +AFSRRD +GVH Q+QEGKSWV VT P GRL+ +V
Sbjct: 210 SGLDNVRNLVGSPIAGLDPHELVDTRPVCAQINSDITGAFRGNPEWANLPRKFNIAVSGSRDDFSHTTINDIGLQAAVHPDCPSEPGFNIVLGGYFSIKRVAESIPMGAWVSARDAPAFSLAVLEVFRDYGRREDRQKTRLMWLLEERGLDWFRAMVNEILARRGVDAL---RAAAPPPADAFSRRDLLGVHTQRQEGKSWVGVTVPVGRLSVGEV 422 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15471.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15471.3828.1 >prot_E-fasciculatus_F_contig15471.3828.1 ID=prot_E-fasciculatus_F_contig15471.3828.1|Name=mRNA_E-fasciculatus_F_contig15471.3828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp MNRISSCAHNNDNNHSGMDNVRNMVGSPIAGLDPQEMVDTRQLCNEINDMback to top mRNA from alignment at E-fasciculatus_F_contig15471:236..2284+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15471.3828.1 ID=mRNA_E-fasciculatus_F_contig15471.3828.1|Name=mRNA_E-fasciculatus_F_contig15471.3828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2049bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15471:236..2284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15471:236..2284+ >mRNA_E-fasciculatus_F_contig15471.3828.1 ID=mRNA_E-fasciculatus_F_contig15471.3828.1|Name=mRNA_E-fasciculatus_F_contig15471.3828.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15471:236..2284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |