mRNA_E-fasciculatus_F_contig15467.3826.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15467.3826.1
Unique NamemRNA_E-fasciculatus_F_contig15467.3826.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15467.3826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15467contigE-fasciculatus_F_contig15467:2..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size495
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928024.4170809-UTR-E-fasciculatus_F_contig15467:1..1311622928024.4170809-UTR-E-fasciculatus_F_contig15467:1..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15467 2..131 +
1695995792.8052373-UTR-E-fasciculatus_F_contig15467:1..1311695995792.8052373-UTR-E-fasciculatus_F_contig15467:1..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15467 2..131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928024.4276311-CDS-E-fasciculatus_F_contig15467:131..4941622928024.4276311-CDS-E-fasciculatus_F_contig15467:131..494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15467 132..494 +
1695995792.8208945-CDS-E-fasciculatus_F_contig15467:131..4941695995792.8208945-CDS-E-fasciculatus_F_contig15467:131..494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15467 132..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15467.3826.1prot_E-fasciculatus_F_contig15467.3826.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15467 132..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15467.3826.1

>prot_E-fasciculatus_F_contig15467.3826.1 ID=prot_E-fasciculatus_F_contig15467.3826.1|Name=mRNA_E-fasciculatus_F_contig15467.3826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MPTHPWRLRLFLRLMSLSPISPFATQPTTIYQQHPRPPLPSTTPSLTTID
SLPLQSTIPHYNRQKMYTCTPPLWINRGGVPDGKVWTLKCLQKCARGRRR
KEGGAKKTASPSHLASQLREI
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mRNA from alignment at E-fasciculatus_F_contig15467:2..494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15467.3826.1 ID=mRNA_E-fasciculatus_F_contig15467.3826.1|Name=mRNA_E-fasciculatus_F_contig15467.3826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=493bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15467:2..494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAATCTACTTAAAAAATCCCAGAAAACTTTGTCGCACGACAAACATCAA
AACGGCAAATTATGATGTAATGTCATGTAAAATATAGTAAATCGTGCTCA
ACAGGTCAACGCTCTTTACATATTACACCCATGCCCACGCATCCCTGGCG
TCTCCGCCTCTTCCTCCGTCTAATGTCCCTCTCTCCCATATCCCCCTTCG
CAACACAACCAACAACTATTTACCAACAACACCCCCGCCCGCCATTACCA
TCGACAACACCCTCCCTGACTACAATCGACAGCCTCCCACTACAATCGAC
CATTCCCCACTACAATCGACAAAAGATGTACACTTGCACACCGCCCCTCT
GGATCAATCGGGGCGGTGTTCCAGACGGCAAAGTCTGGACTCTAAAATGC
CTGCAAAAATGTGCGCGTGGTCGCCGACGGAAGGAGGGGGGCGCAAAAAA
AACAGCGTCCCCATCCCATCTTGCGTCGCAACTCCGCGAAATT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15467:2..494+

>mRNA_E-fasciculatus_F_contig15467.3826.1 ID=mRNA_E-fasciculatus_F_contig15467.3826.1|Name=mRNA_E-fasciculatus_F_contig15467.3826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15467:2..494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCACGCATCCCTGGCGTCTCCGCCTCTTCCTCCGTCTAATGTCCCT
CTCTCCCATATCCCCCTTCGCAACACAACCAACAACTATTTACCAACAAC
ACCCCCGCCCGCCATTACCATCGACAACACCCTCCCTGACTACAATCGAC
AGCCTCCCACTACAATCGACCATTCCCCACTACAATCGACAAAAGATGTA
CACTTGCACACCGCCCCTCTGGATCAATCGGGGCGGTGTTCCAGACGGCA
AAGTCTGGACTCTAAAATGCCTGCAAAAATGTGCGCGTGGTCGCCGACGG
AAGGAGGGGGGCGCAAAAAAAACAGCGTCCCCATCCCATCTTGCGTCGCA
ACTCCGCGAAATTATGCCCACGCATCCCTGGCGTCTCCGCCTCTTCCTCC
GTCTAATGTCCCTCTCTCCCATATCCCCCTTCGCAACACAACCAACAACT
ATTTACCAACAACACCCCCGCCCGCCATTACCATCGACAACACCCTCCCT
GACTACAATCGACAGCCTCCCACTACAATCGACCATTCCCCACTACAATC
GACAAAAGATGTACACTTGCACACCGCCCCTCTGGATCAATCGGGGCGGT
GTTCCAGACGGCAAAGTCTGGACTCTAAAATGCCTGCAAAAATGTGCGCG
TGGTCGCCGACGGAAGGAGGGGGGCGCAAAAAAAACAGCGTCCCCATCCC
ATCTTGCGTCGCAACTCCGCGAAATT
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